RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TCERG1LQ5VWI1 586 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 SEPT14Q6ZU15 432 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 OTOP2Q7RTS6 562 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 RALYLQ86SE5 291 aaKnown RBP8.38□□□□□ -1.07
USP54-208ENST00000461520 C19orf47Q8N9M1 422 aaKnown RBP8.38□□□□□ -1.07
USP54-208ENST00000461520 OR6P1Q8NGX9 317 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 NCOA7Q8NI08 942 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 KLHL6Q8WZ60 621 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 SCLYQ96I15 445 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 PRDM12Q9H4Q4 367 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 RIOX1Q9H6W3 641 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 PXMP2Q9NR77 195 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 RAPGEFL1Q9UHV5 662 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 MSRAQ9UJ68 235 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 PCDHA1Q9Y5I3 950 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 BDP1A6H8Y1 2624 aa8.38□□□□□ -1.07
USP54-208ENST00000461520 E7EWF7 191 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 IFIT3O14879 490 aaKnown RBP8.37□□□□□ -1.07
USP54-208ENST00000461520 SGSM2O43147 1006 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 CASTP20810 708 aaKnown RBP8.37□□□□□ -1.07
USP54-208ENST00000461520 PTH1RQ03431 593 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 TROAPQ12815 778 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 BFSP2Q13515 415 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 GRM4Q14833 912 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 WTAPQ15007 396 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 SART3Q15020 963 aaKnown RBP8.37□□□□□ -1.07
USP54-208ENST00000461520 DGKDQ16760 1214 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 LY6KQ17RY6 165 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 LILRA6Q6PI73 481 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 KCNV1Q6PIU1 500 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 STOX1Q6ZVD7 989 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 SESTD1Q86VW0 696 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 IGDCC3Q8IVU1 814 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 TMEFF1Q8IYR6 380 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 FAM169BQ8N8A8 192 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 AFG1LQ8WV93 481 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 MAP4K1Q92918 833 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 PDCD2LQ9BRP1 358 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 SLC28A3Q9HAS3 691 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 THEGQ9P2T0 379 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 MRVI1Q9Y6F6 885 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 SLC4A7Q9Y6M7 1214 aa8.37□□□□□ -1.07
USP54-208ENST00000461520 TCF20Q9UGU0 1960 aaKnown RBP8.37□□□□□ -1.07
USP54-208ENST00000461520 SCN10AQ9Y5Y9 1956 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 A0A1W2PQJ5 194 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 PPP1R11O60927 126 aaPredicted RBP8.36□□□□□ -1.07
USP54-208ENST00000461520 IQCF3P0C7M6 154 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 ACTN1P12814 892 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 TACR1P25103 407 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 TMEM62Q0P6H9 643 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 PTGISQ16647 500 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 DPY19L1Q2PZI1 675 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 PLEKHN1Q494U1 663 aaPredicted RBP8.36□□□□□ -1.07
USP54-208ENST00000461520 BICRALQ6AI39 1079 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 CHST3Q7LGC8 479 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 DEFB128Q7Z7B8 93 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 CATIPQ7Z7H3 387 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 HOMER1Q86YM7 354 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 PPTC7Q8NI37 304 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 CAGE1Q8TC20 777 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 PHOSPHO2Q8TCD6 241 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 ATXN2LQ8WWM7 1075 aaKnown RBP8.36□□□□□ -1.07
USP54-208ENST00000461520 KAT2BQ92831 832 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 DACT3Q96B18 629 aaPredicted RBP8.36□□□□□ -1.07
USP54-208ENST00000461520 ASB2Q96Q27 587 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 PIGSQ96S52 555 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 MAP3K14Q99558 947 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 MTA3Q9BTC8 594 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 KATNAL1Q9BW62 490 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 GBP3Q9H0R5 595 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 PCDHA5Q9Y5H7 936 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 HCFC2Q9Y5Z7 792 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 CHD9Q3L8U1 2897 aa8.36□□□□□ -1.07
USP54-208ENST00000461520 GCOM1H8Y6P7 765 aaPredicted RBP8.35□□□□□ -1.07
USP54-208ENST00000461520 STXBP3O00186 592 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 AURKAO14965 403 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 CYTH3O43739 400 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 PPFIA4O75335 1185 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 PPM1BO75688 479 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 PARNO95453 639 aaKnown RBP8.35□□□□□ -1.07
USP54-208ENST00000461520 POLR2MP0CAP2 368 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 TGFB3P10600 412 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 MYCLP12524 364 aaPredicted RBP8.35□□□□□ -1.07
USP54-208ENST00000461520 ATP2A2P16615 1042 aaKnown RBP8.35□□□□□ -1.07
USP54-208ENST00000461520 PGM5Q15124 567 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 SLC35G1Q2M3R5 365 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 VMACQ2NL98 169 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 DHX37Q8IY37 1157 aaKnown RBP8.35□□□□□ -1.07
USP54-208ENST00000461520 MB21D2Q8IYB1 491 aaPredicted RBP8.35□□□□□ -1.07
USP54-208ENST00000461520 IGDCC4Q8TDY8 1250 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 AFAP1L1Q8TED9 768 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 UHRF1Q96T88 793 aaPredicted RBP8.35□□□□□ -1.07
USP54-208ENST00000461520 NKX2-4Q9H2Z4 354 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 SUSD2Q9UGT4 822 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 INPP5FQ9Y2H2 1132 aa8.35□□□□□ -1.07
USP54-208ENST00000461520 HAS3O00219 553 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 STAM2O75886 525 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 DDAH1O94760 285 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 BAIAP3O94812 1187 aa8.34□□□□□ -1.07
USP54-208ENST00000461520 F2P00734 622 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms