RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 EFNA5P52803 228 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 ZNF449Q6P9G9 518 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 TMC3Q7Z5M5 1100 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 SEC16BQ96JE7 1060 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 MED10Q9BTT4 135 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 MIS12Q9H081 205 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 AJAP1Q9UKB5 411 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 MAGED2Q9UNF1 606 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 CSDE1O75534 798 aaKnown RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 STK10O94804 968 aaKnown RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 AGTP01019 485 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 TCF7P36402 384 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 CNTN2Q02246 1040 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 CAV1Q03135 178 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 ACTN3Q08043 901 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 SPIRE1Q08AE8 756 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 XRRA1Q6P2D8 792 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 RDM1Q8NG50 284 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 RAPGEF5Q92565 580 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 ALG3Q92685 438 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 MTMR12Q9C0I1 747 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 GRAP2O75791 330 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 GJB6O95452 261 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 SUPT20HL2P0C7V6 817 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 RARAP10276 462 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 ASTE1Q2TB18 679 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 CCDC62Q6P9F0 684 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 EXOC8Q8IYI6 725 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 PRPF31Q8WWY3 499 aaKnown RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 CFAP36Q96G28 342 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 TGS1Q96RS0 853 aaKnown RBP12.31□□□□□ -0.44
NPHP4-204ENST00000460696 COL20A1Q9P218 1284 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 PCDHA2Q9Y5H9 948 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 ZBED1O96006 694 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 PGK2P07205 417 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 GARTP22102 1010 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 RPL21P46778 160 aaKnown RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 SREBF2Q12772 1141 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 IFRD2Q12894 506 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 CATSPER4Q7RTX7 472 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 CCDC60Q8IWA6 550 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 CCNYQ8ND76 341 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 TMC2Q8TDI7 906 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 P2RX7Q99572 595 aaKnown RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 STRIP2Q9ULQ0 834 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 NHSL1Q5SYE7 1610 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 TMEM120BA0PK00 339 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 F5H423 210 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 GOLGA8RI6L899 631 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 ATN1P54259 1190 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 NLRP11P59045 1033 aaKnown RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 IRX4P78413 519 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 CFAP157Q5JU67 520 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 FEZF2Q8TBJ5 459 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 C2orf40Q9H1Z8 148 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 WRAP73Q9P2S5 460 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 ADAMTS7Q9UKP4 1686 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 FRMD3A2A2Y4 597 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 MAP2K2P36507 400 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 PHKA2P46019 1235 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 CLNS1AP54105 237 aaKnown RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 ARL4CP56559 192 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 MYO1EQ12965 1108 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 SMAD1Q15797 465 aaKnown RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 DAB2IPQ5VWQ8 1189 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 C4orf33Q8N1A6 199 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 SCFD2Q8WU76 684 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 STMN2Q93045 179 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 A1CFQ9NQ94 594 aaKnown RBP12.3□□□□□ -0.44
NPHP4-204ENST00000460696 PRKAG2Q9UGJ0 569 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 UBIAD1Q9Y5Z9 338 aa12.3□□□□□ -0.44
NPHP4-204ENST00000460696 RGS7P49802 495 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 CDH6P55285 790 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 MRPS9P82933 396 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 SPARCL1Q14515 664 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 KCNT1Q5JUK3 1230 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 TRMT10CQ7L0Y3 403 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 VSIG10LQ86VR7 867 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 TMEM161BQ8NDZ6 487 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 FAF2Q96CS3 445 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 MMP19Q99542 508 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 EFCC1Q9HA90 598 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 NEU2Q9Y3R4 380 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 AGPSO00116 658 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 PDHXO00330 501 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 CES2O00748 559 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 KRT7P08729 469 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 MAPTP10636 758 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 PCK1P35558 622 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 FLT3P36888 993 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 GTF2BQ00403 316 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 PPATQ06203 517 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 TTLL4Q14679 1199 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 SGSM1Q2NKQ1 1148 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 FKBP1CQ5VVH2 108 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 MAP4K3Q8IVH8 894 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 ZSWIM2Q8NEG5 633 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 SREK1Q8WXA9 508 aaKnown RBP12.29□□□□□ -0.44
NPHP4-204ENST00000460696 TTC17Q96AE7 1141 aa12.29□□□□□ -0.44
NPHP4-204ENST00000460696 PARK7Q99497 189 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms