RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TASP1Q9H6P5 420 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 FBXO28Q9NVF7 368 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 CHCHD3Q9NX63 227 aaKnown RBP18.02■□□□□ 0.48
PTPRF-209ENST00000438120 KDM6AO15550 1401 aaPredicted RBP18.02■□□□□ 0.48
PTPRF-209ENST00000438120 MED14O60244 1454 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 UBE2Q2LH0YL09 131 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 MAP4P27816 1152 aaKnown RBP18.02■□□□□ 0.48
PTPRF-209ENST00000438120 ST8SIA6P61647 398 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 GLRA4Q5JXX5 417 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 IPMKQ8NFU5 416 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 TSC22D3Q99576 134 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 HPS4Q9NQG7 708 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 CCDC22O60826 627 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 TEDDM1Q5T9Z0 273 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 SPATA21Q7Z572 469 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 GTPBP10A4D1E9 387 aaKnown RBP18.02■□□□□ 0.47
PTPRF-209ENST00000438120 TKFCQ3LXA3 575 aa18.02■□□□□ 0.47
PTPRF-209ENST00000438120 MTHFD1LQ6UB35 978 aa18.02■□□□□ 0.47
PTPRF-209ENST00000438120 TCF7P36402 384 aaPredicted RBP18.02■□□□□ 0.47
PTPRF-209ENST00000438120 BYSLQ13895 437 aaKnown RBP18.02■□□□□ 0.47
PTPRF-209ENST00000438120 ICA1LQ8NDH6 482 aa18.02■□□□□ 0.47
PTPRF-209ENST00000438120 RIN2Q8WYP3 895 aaPredicted RBP18.02■□□□□ 0.47
PTPRF-209ENST00000438120 TMEM106CQ9BVX2 250 aa18.02■□□□□ 0.47
PTPRF-209ENST00000438120 YIPF3Q9GZM5 350 aa18.02■□□□□ 0.47
PTPRF-209ENST00000438120 C20orf96Q9NUD7 363 aaPredicted RBP18.02■□□□□ 0.47
PTPRF-209ENST00000438120 WDR35Q9P2L0 1181 aa18.02■□□□□ 0.47
PTPRF-209ENST00000438120 HIST1H2AGP0C0S8 130 aaPredicted RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 HIST1H2ADP20671 130 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 PIGHQ14442 188 aaPredicted RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 C6orf10Q5SRN2 563 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 DDX42Q86XP3 938 aaKnown RBP eCLIP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 L3MBTL3Q96JM7 780 aaPredicted RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 HIST1H2AHQ96KK5 128 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 HIST1H2AJQ99878 128 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 H2AFJQ9BTM1 129 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 ZFYVE28Q9HCC9 887 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 PDS5AQ29RF7 1337 aaKnown RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 TARSL2A2RTX5 802 aaKnown RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 NDUFS3O75489 264 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 NAB2Q15742 525 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 GNASQ5JWF2 1037 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 SPATA18Q8TC71 538 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 WWP1Q9H0M0 922 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 USP42Q9H9J4 1324 aaKnown RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 SPDYE5A6NIY4 337 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 ANGPT2O15123 496 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 CTDNEP1O95476 244 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 PGM1P36871 562 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 SEMA3FQ13275 785 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 VPS72Q15906 364 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 LRRC36Q1X8D7 754 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 SPDYE7PQ495Y7 208 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 C16orf87Q6PH81 154 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 FBXO33Q7Z6M2 555 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 DTX3LQ8TDB6 740 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 RPS6P62753 249 aaKnown RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 ZC3H15Q8WU90 426 aaKnown RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 SPATA31A1Q5TZJ5 1347 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 MAGEB2O15479 319 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 SLC37A4O43826 429 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 ITGB3P05106 788 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 KRT4P19013 534 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 RFC5P40937 340 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 OCA2Q04671 838 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 CCDC85BQ15834 202 aaPredicted RBP18.01■□□□□ 0.47
PTPRF-209ENST00000438120 GPRC5AQ8NFJ5 357 aa18.01■□□□□ 0.47
PTPRF-209ENST00000438120 PHF20L1A8MW92 1017 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 OCM2P0CE71 109 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 OCMP0CE72 109 aaPredicted RBP18■□□□□ 0.47
PTPRF-209ENST00000438120 PPP3CCP48454 512 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 RASGRP2Q7LDG7 609 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 OSBPL1AQ9BXW6 950 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 TRIM45Q9H8W5 580 aaPredicted RBP18■□□□□ 0.47
PTPRF-209ENST00000438120 PRG3Q9Y2Y8 225 aaPredicted RBP18■□□□□ 0.47
PTPRF-209ENST00000438120 RAD51CO43502 376 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 NCAM1P13591 858 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 CYP2C19P33261 490 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 HUNKP57058 714 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 STILQ15468 1287 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 MTBPQ96DY7 904 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 TMEM8AQ9HCN3 771 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 NAGPAQ9UK23 515 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 ADGRA2Q96PE1 1338 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 CD4P01730 458 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 ATP6V1E1P36543 226 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 TSSK1BQ9BXA7 367 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 ERAP1Q9NZ08 941 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 CST8O60676 142 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 LRRC74AQ0VAA2 488 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 GTF2H3Q13889 308 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 OSBPL8Q9BZF1 889 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 SLC30A1Q9Y6M5 507 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 EXTL3O43909 919 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 CELF2O95319 508 aaKnown RBP18■□□□□ 0.47
PTPRF-209ENST00000438120 PYGLP06737 847 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 ENO3P13929 434 aaPredicted RBP18■□□□□ 0.47
PTPRF-209ENST00000438120 BLVRAP53004 296 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 C2CD6Q53TS8 623 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 RABGAP1LQ5R372 815 aa18■□□□□ 0.47
PTPRF-209ENST00000438120 IFNEQ86WN2 208 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms