RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RNF135Q8IUD6 432 aa10□□□□□ -0.81
VPS53-203ENST00000401468 ADHFE1Q8IWW8 467 aa10□□□□□ -0.81
VPS53-203ENST00000401468 SLC39A11Q8N1S5 342 aa10□□□□□ -0.81
VPS53-203ENST00000401468 SMG8Q8ND04 991 aaKnown RBP10□□□□□ -0.81
VPS53-203ENST00000401468 RSPH1Q8WYR4 309 aa10□□□□□ -0.81
VPS53-203ENST00000401468 B3GALT6Q96L58 329 aa10□□□□□ -0.81
VPS53-203ENST00000401468 ZFP42Q96MM3 310 aa10□□□□□ -0.81
VPS53-203ENST00000401468 CDT1Q9H211 546 aa10□□□□□ -0.81
VPS53-203ENST00000401468 SMOC2Q9H3U7 446 aa10□□□□□ -0.81
VPS53-203ENST00000401468 SPG21Q9NZD8 308 aa10□□□□□ -0.81
VPS53-203ENST00000401468 KLK14Q9P0G3 267 aa10□□□□□ -0.81
VPS53-203ENST00000401468 GMPR2Q9P2T1 348 aaKnown RBP10□□□□□ -0.81
VPS53-203ENST00000401468 PRG3Q9Y2Y8 225 aaPredicted RBP10□□□□□ -0.81
VPS53-203ENST00000401468 PCDHB2Q9Y5E7 798 aa10□□□□□ -0.81
VPS53-203ENST00000401468 ZNF638Q14966 1978 aaKnown RBP10□□□□□ -0.81
VPS53-203ENST00000401468 KIF26AQ9ULI4 1882 aaPredicted RBP10□□□□□ -0.81
VPS53-203ENST00000401468 COL4A3Q01955 1670 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 SYCE3A1L190 88 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 TISP43B9A030 160 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 PI4K2BG5E9Z4 385 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 PSMA7O14818 248 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 MAPK13O15264 365 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 OGTO15294 1046 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 CLDN3O15551 220 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 MEFVO15553 781 aaPredicted RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 OFD1O75665 1012 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 EOMESO95936 686 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 CCNYL3P0C7X3 344 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 EPCAMP16422 314 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 AKAP5P24588 427 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 GRM5P41594 1212 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 ZNF445P59923 1031 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 ENPEPQ07075 957 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 STIM1Q13586 685 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 ZNF568Q3ZCX4 644 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 XKR4Q5GH76 650 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 NOMO2Q5JPE7 1267 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 RARS2Q5T160 578 aaKnown RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 ISM2Q6H9L7 571 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 SYCE2Q6PIF2 218 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 SASS6Q6UVJ0 657 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 CRELD2Q6UXH1 353 aaPredicted RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 ALKAL1Q6UXT8 129 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 HS2ST1Q7LGA3 356 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 TAS1R1Q7RTX1 841 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 APBB1IPQ7Z5R6 666 aaPredicted RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 GLYCTKQ8IVS8 523 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 VPS52Q8N1B4 723 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 SMRP1Q8NCR6 262 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 ST13P5Q8NFI4 369 aaPredicted RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 ZBTB45Q96K62 511 aaPredicted RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 DUSP9Q99956 384 aaKnown RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 BPIFA3Q9BQP9 254 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 ADPGKQ9BRR6 497 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 CBWD1Q9BRT8 395 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 NXF3Q9H4D5 531 aaKnown RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 ANO10Q9NW15 660 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 MIOSQ9NXC5 875 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 RWDD2AQ9UIY3 292 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 CPSF3Q9UKF6 684 aaKnown RBP9.99□□□□□ -0.81
VPS53-203ENST00000401468 MAPK8IP1Q9UQF2 711 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 IPPQ9Y573 584 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 MIA3Q5JRA6 1907 aa9.99□□□□□ -0.81
VPS53-203ENST00000401468 C2orf71A6NGG8 1288 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 DCXO43602 365 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 CALUO43852 315 aaPredicted RBP9.98□□□□□ -0.81
VPS53-203ENST00000401468 CLASP2O75122 1294 aaKnown RBP9.98□□□□□ -0.81
VPS53-203ENST00000401468 NPTXRO95502 500 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 CXCL14O95715 111 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 CAVIN2O95810 425 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 LDHAP00338 332 aaKnown RBP9.98□□□□□ -0.81
VPS53-203ENST00000401468 SPATA31D3P0C874 917 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 CCDC192P0DO97 292 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 MLH1P40692 756 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 PAK1Q13153 545 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 ANKRD40Q6AI12 368 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 GLB1LQ6UWU2 654 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 SPATA31D4Q6ZUB0 917 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 C11orf57Q6ZUT1 292 aaPredicted RBP9.98□□□□□ -0.81
VPS53-203ENST00000401468 NELFCDQ8IXH7 590 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 PARP9Q8IXQ6 854 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 SYCP3Q8IZU3 236 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 HASPINQ8TF76 798 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 NELFBQ8WX92 580 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 BICD1Q96G01 975 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 TSPAN18Q96SJ8 248 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 GAD1Q99259 594 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 MKNK1Q9BUB5 465 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 UBN1Q9NPG3 1134 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 HSPBP1Q9NZL4 362 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 AGO2Q9UKV8 859 aaKnown RBP9.98□□□□□ -0.81
VPS53-203ENST00000401468 SPTBN4Q9H254 2564 aa9.98□□□□□ -0.81
VPS53-203ENST00000401468 SCN1AP35498 2009 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 TTC26A0AVF1 554 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 BICDL2A1A5D9 508 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 TRIM49BA6NDI0 452 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 SLC16A3O15427 465 aaKnown RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 EXTL3O43909 919 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 NR3C1P04150 777 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms