RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CLIC6Q96NY7 704 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 ZFP14Q9HCL3 533 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 KCNG1Q9UIX4 513 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 MAFFQ9ULX9 164 aa31.04■■■□□ 2.56
HMGB1-205ENST00000399494 CACNA1AO00555 2505 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 SPTLC2O15270 562 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 PLS3P13797 630 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 MCM4P33991 863 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 ADCY1Q08828 1119 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 PDZD4Q76G19 769 aaPredicted RBP31.03■■■□□ 2.56
HMGB1-205ENST00000399494 HS6ST3Q8IZP7 471 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 SYT2Q8N9I0 419 aaPredicted RBP31.03■■■□□ 2.56
HMGB1-205ENST00000399494 ZBTB44Q8NCP5 570 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 APPL2Q8NEU8 664 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 NELL1Q92832 810 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 ZNF512Q96ME7 567 aaPredicted RBP31.03■■■□□ 2.56
HMGB1-205ENST00000399494 ZSWIM3Q96MP5 696 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 ASB16Q96NS5 453 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 CCSER1Q9C0I3 900 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 CEP72Q9P209 647 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 CCDC39Q9UFE4 941 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 AFF4Q9UHB7 1163 aaKnown RBP31.03■■■□□ 2.56
HMGB1-205ENST00000399494 MRPS17Q9Y2R5 130 aaKnown RBP31.03■■■□□ 2.56
HMGB1-205ENST00000399494 PCDHGA2Q9Y5H1 932 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 CITO14578 2027 aa31.03■■■□□ 2.56
HMGB1-205ENST00000399494 SPTLC1O15269 473 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 MOSPD3O75425 235 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 YEATS4O95619 227 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 PLA2G4BP0C869 781 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 MAPTP10636 758 aaKnown RBP31.02■■■□□ 2.56
HMGB1-205ENST00000399494 PLCG1P19174 1290 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 SMTNP53814 917 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 GRM2Q14416 872 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 NOLC1Q14978 699 aaKnown RBP eCLIP31.02■■■□□ 2.56
HMGB1-205ENST00000399494 CYP4A22Q5TCH4 519 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 ZNF280DQ6N043 979 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 ZNF687Q8N1G0 1237 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 EPSTI1Q96J88 318 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 ANKFY1Q9P2R3 1169 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 TUBGCP4Q9UGJ1 667 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 PCDHB8Q9UN66 801 aa31.02■■■□□ 2.56
HMGB1-205ENST00000399494 MCL1Q07820 350 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 ATL3Q6DD88 541 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 IQCEQ6IPM2 695 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 ZPBP2Q6X784 338 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 RNF19BQ6ZMZ0 732 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 ELMOD1Q8N336 334 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 TMEM130Q8N3G9 435 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 ATRIPQ8WXE1 791 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 TRMT61BQ9BVS5 477 aaKnown RBP31.01■■■□□ 2.55
HMGB1-205ENST00000399494 HAPLN2Q9GZV7 340 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 BRD9Q9H8M2 597 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 ZSCAN32Q9NX65 697 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 CFAP45Q9UL16 551 aa31.01■■■□□ 2.55
HMGB1-205ENST00000399494 CLDN3O15551 220 aa31■■■□□ 2.55
HMGB1-205ENST00000399494 PPP6R2O75170 966 aa31■■■□□ 2.55
HMGB1-205ENST00000399494 TWF1Q12792 350 aa31■■■□□ 2.55
HMGB1-205ENST00000399494 USP49Q70CQ1 688 aa31■■■□□ 2.55
HMGB1-205ENST00000399494 SMARCD2Q92925 531 aa31■■■□□ 2.55
HMGB1-205ENST00000399494 PLEKHA5Q9HAU0 1116 aa31■■■□□ 2.55
HMGB1-205ENST00000399494 TCHHQ07283 1943 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 M0QZQ0 153 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 LILRB5O75023 590 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 EPHA5P54756 1037 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 SLC12A3P55017 1021 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 DHX8Q14562 1220 aaKnown RBP30.99■■■□□ 2.55
HMGB1-205ENST00000399494 ZBTB6Q15916 424 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 MAP4K3Q8IVH8 894 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 ZNF334Q9HCZ1 680 aaPredicted RBP30.99■■■□□ 2.55
HMGB1-205ENST00000399494 TRPV5Q9NQA5 729 aa30.99■■■□□ 2.55
HMGB1-205ENST00000399494 TTC26A0AVF1 554 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 MAN2B1O00754 1011 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 OAZ2O95190 189 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 CXCL8P10145 99 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 LRPAP1P30533 357 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 DNM1Q05193 864 aaKnown RBP30.98■■■□□ 2.55
HMGB1-205ENST00000399494 SPAG1Q07617 926 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 PUM1Q14671 1186 aaKnown RBP eCLIP30.98■■■□□ 2.551e-7■■■□□ 17.8
HMGB1-205ENST00000399494 TSSK4Q6SA08 328 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 VITQ6UXI7 678 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 DGLUCYQ7Z3D6 616 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 BEST2Q8NFU1 509 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 IRF7Q92985 503 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 TRPV4Q9HBA0 871 aa30.98■■■□□ 2.55
HMGB1-205ENST00000399494 VNN2O95498 520 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 CLTAP09496 248 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 MYL4P12829 197 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 CPB1P15086 417 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 GJA1P17302 382 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 PSMC3P17980 439 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 MTAPQ13126 283 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 LEMD2Q8NC56 503 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 RAD54LQ92698 747 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 PRMT8Q9NR22 394 aaPredicted RBP30.97■■■□□ 2.55
HMGB1-205ENST00000399494 DLL3Q9NYJ7 618 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 KCND2Q9NZV8 630 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 ZDHHC9Q9Y397 364 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 ATP6V1DQ9Y5K8 247 aa30.97■■■□□ 2.55
HMGB1-205ENST00000399494 TIMM13Q9Y5L4 95 aaPredicted RBP30.97■■■□□ 2.55
HMGB1-205ENST00000399494 PDCD11Q14690 1871 aaKnown RBP30.97■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms