RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 KRT10P13645 584 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 TCF4P15884 667 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 SSR1P43307 286 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 DNAJC3Q13217 504 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 FASTKD3Q14CZ7 662 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 DLGAP5Q15398 846 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 STYK1Q6J9G0 422 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 SAMD3Q8N6K7 520 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 DENND1AQ8TEH3 1009 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 AKT1S1Q96B36 256 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 GRAMD1AQ96CP6 724 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ZNF341Q9BYN7 854 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ETNK1Q9HBU6 452 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 SAYSD1Q9NPB0 183 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 TCEAL9Q9UHQ7 104 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 GRID1Q9ULK0 1009 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 TELO2Q9Y4R8 837 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 EXOC1LA0A1B0GW35 172 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 PI4K2BG5E9Z4 385 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ABHD2P08910 425 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ETS1P14921 441 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 SFNP31947 248 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 SKIV2L2P42285 1042 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 NOMO3P69849 1222 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 CCDC15Q0P6D6 951 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 BRDTQ58F21 947 aaPredicted RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 TDRD10Q5VZ19 366 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 MAB21L3Q8N8X9 362 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 EXD1Q8NHP7 514 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ZNF570Q96NI8 536 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 MYLK2Q9H1R3 596 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 KIAA1586Q9HCI6 787 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 SLCO1B3Q9NPD5 702 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 DNPEPQ9ULA0 475 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 PTPRJQ12913 1337 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 TLR3O15455 904 aaKnown RBP13.46□□□□□ -0.25
SHMT1-205ENST00000395684 MAGEB2O15479 319 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 TBC1D12O60347 775 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 STBD1O95210 358 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 HLA-DRAP01903 254 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 POTEJP0CG39 1038 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 GARTP22102 1010 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 BPIFB4P59827 614 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 CLDN10P78369 228 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 KRT76Q01546 638 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 NAA25Q14CX7 972 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 ZACNQ401N2 412 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 KAZNQ674X7 775 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 PLEKHA7Q6IQ23 1121 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 BICD1Q96G01 975 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 RMDN3Q96TC7 470 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 PDCD2LQ9BRP1 358 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 APOBEC3GQ9HC16 384 aaKnown RBP13.46□□□□□ -0.25
SHMT1-205ENST00000395684 GABBR1Q9UBS5 961 aa13.46□□□□□ -0.25
SHMT1-205ENST00000395684 RGS17Q9UGC6 210 aaPredicted RBP13.46□□□□□ -0.25
SHMT1-205ENST00000395684 ZBTB12Q9Y330 459 aaPredicted RBP13.46□□□□□ -0.25
SHMT1-205ENST00000395684 POC1B-GALNT4F8VUJ3 575 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 LIASO43766 372 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 KIF1CO43896 1103 aaKnown RBP13.46□□□□□ -0.26
SHMT1-205ENST00000395684 RAD17O75943 681 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 VNN1O95497 513 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 C4BPAP04003 597 aaKnown RBP13.46□□□□□ -0.26
SHMT1-205ENST00000395684 TNNI1P19237 187 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 NFX1Q12986 1120 aaKnown RBP13.46□□□□□ -0.26
SHMT1-205ENST00000395684 PKN2Q16513 984 aaKnown RBP13.46□□□□□ -0.26
SHMT1-205ENST00000395684 SPDYE2Q495Y8 402 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 WDR44Q5JSH3 913 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 LIN9Q5TKA1 542 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 ABRAQ8N0Z2 381 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 RIBC1Q8N443 379 aaPredicted RBP13.46□□□□□ -0.26
SHMT1-205ENST00000395684 FBXO41Q8TF61 875 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 CFAP57Q96MR6 1250 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 MOV10L1Q9BXT6 1211 aaKnown RBP13.46□□□□□ -0.26
SHMT1-205ENST00000395684 XPNPEP1Q9NQW7 623 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 PHTF1Q9UMS5 762 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 CHKBQ9Y259 395 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 STARD13Q9Y3M8 1113 aa13.46□□□□□ -0.26
SHMT1-205ENST00000395684 PECAM1P16284 738 aaPredicted RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 SLC8A3P57103 927 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 RPL7AP62424 266 aaKnown RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 MOGSQ13724 837 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 RSBN1LQ6PCB5 846 aaPredicted RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 TMEM270Q6UE05 265 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 ADAM33Q9BZ11 813 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 C17orf75Q9HAS0 396 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 SLC38A10Q9HBR0 1119 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 MRPL47Q9HD33 250 aaKnown RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 PDLIM7Q9NR12 457 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 TRPC5Q9UL62 973 aaPredicted RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 SCAF8Q9UPN6 1271 aaKnown RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 PCDHA10Q9Y5I2 948 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 DNALI1O14645 258 aaPredicted RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 ASNSP08243 561 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 ACOT2P49753 483 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 POLGP54098 1239 aaPredicted RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 NLRP11P59045 1033 aaKnown RBP13.45□□□□□ -0.26
SHMT1-205ENST00000395684 CCDC142Q17RM4 750 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 SCARA3Q6AZY7 606 aa13.45□□□□□ -0.26
SHMT1-205ENST00000395684 CAPN12Q6ZSI9 719 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms