RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MORC3Q14149 939 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 AAK1Q2M2I8 961 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 COBLL1Q53SF7 1204 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 PTCRAQ6ISU1 281 aaPredicted RBP14.43□□□□□ -0.1
VPS28-202ENST00000377348 SYCE2Q6PIF2 218 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 PPFIBP1Q86W92 1011 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 WDR49Q8IV35 697 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 C12orf76Q8N812 135 aaPredicted RBP14.43□□□□□ -0.1
VPS28-202ENST00000377348 TMEM174Q8WUU8 243 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 ZNF516Q92618 1163 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 ANKRD36BP1Q96IX9 119 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 FNBP1Q96RU3 617 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 CLSTN2Q9H4D0 955 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 MTRRQ9UBK8 725 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 CDY1Q9Y6F8 540 aa14.43□□□□□ -0.1
VPS28-202ENST00000377348 SCN1AP35498 2009 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 GRXCR2A6NFK2 248 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 LRRIQ3A6PVS8 624 aaPredicted RBP14.42□□□□□ -0.1
VPS28-202ENST00000377348 MBTPS2O43462 519 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 AKAP3O75969 853 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 TNNC2P02585 160 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 SRGAP2BP0DMP2 458 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 BMP1P13497 986 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 OR1D2P34982 312 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 DLG4P78352 724 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 CREMQ03060 361 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 ADAM9Q13443 819 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 MRPL58Q14197 206 aaKnown RBP14.42□□□□□ -0.1
VPS28-202ENST00000377348 MYBPC2Q14324 1141 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 NFIL3Q16649 462 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 DUOXA2Q1HG44 320 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 TJAP1Q5JTD0 557 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 CENPPQ6IPU0 288 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 KLHL10Q6JEL2 608 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 PDXDC1Q6P996 788 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 ANKS3Q6ZW76 656 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 TRAPPC11Q7Z392 1133 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 SMRP1Q8NCR6 262 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 APPL2Q8NEU8 664 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 GPT2Q8TD30 523 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 PARD3BQ8TEW8 1205 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 BORCS6Q96GS4 357 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 MAN1C1Q9NR34 630 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 KIAA1468Q9P260 1216 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 ITGA11Q9UKX5 1188 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 FRMD4BQ9Y2L6 1034 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 PLXNA3P51805 1871 aa14.42□□□□□ -0.1
VPS28-202ENST00000377348 TTC28Q96AY4 2481 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 KPNA7A9QM74 516 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 PPP1R3GB7ZBB8 358 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 TBC1D4O60343 1298 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 WEE2P0C1S8 567 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 ARPP19P56211 112 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 RBP5P82980 135 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 BFSP1Q12934 665 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 EDRF1Q3B7T1 1238 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 CTXN3Q4LDR2 81 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 RARS2Q5T160 578 aaKnown RBP14.41□□□□□ -0.1
VPS28-202ENST00000377348 ANKRD40Q6AI12 368 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 LILRA6Q6PI73 481 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 ZNF560Q96MR9 790 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 S1PR5Q9H228 398 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 FBXL5Q9UKA1 691 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 USP15Q9Y4E8 981 aaPredicted RBP14.41□□□□□ -0.1
VPS28-202ENST00000377348 BACE2Q9Y5Z0 518 aa14.41□□□□□ -0.1
VPS28-202ENST00000377348 MUC3AQ02505 3323 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 SPDYE4A6NLX3 237 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 GOLGA6L22H0YM25 854 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 H7C4K7 107 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 CYB561D2O14569 222 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 PSMA7O14818 248 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 RFPL2O75678 378 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 CST3P01034 146 aaPredicted RBP14.4□□□□□ -0.1
VPS28-202ENST00000377348 OR4Q2P0C623 313 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 ODC1P11926 461 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 CCNE1P24864 410 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 RPL13P26373 211 aaKnown RBP14.4□□□□□ -0.1
VPS28-202ENST00000377348 PSMC2P35998 433 aaKnown RBP14.4□□□□□ -0.1
VPS28-202ENST00000377348 PNPLA4P41247 253 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 ROR1Q01973 937 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 YWHAHQ04917 246 aaPredicted RBP14.4□□□□□ -0.1
VPS28-202ENST00000377348 SMAD4Q13485 552 aaKnown RBP14.4□□□□□ -0.1
VPS28-202ENST00000377348 STIM1Q13586 685 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 RAB33AQ14088 237 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 SV2CQ496J9 727 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 C1orf220Q5T0J3 134 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 WSCD1Q658N2 575 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 SLC8B1Q6J4K2 584 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 ZNF280DQ6N043 979 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 TMC5Q6UXY8 1006 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 USP37Q86T82 979 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 FAM186BQ8IYM0 893 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 LRRC52Q8N7C0 313 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 KREMEN2Q8NCW0 462 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 NECAB3Q96P71 396 aaPredicted RBP14.4□□□□□ -0.1
VPS28-202ENST00000377348 TSG101Q99816 390 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 GTPBP4Q9BZE4 634 aaKnown RBP14.4□□□□□ -0.1
VPS28-202ENST00000377348 NUP62CLQ9H1M0 184 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 DZANK1Q9NVP4 752 aa14.4□□□□□ -0.1
VPS28-202ENST00000377348 CTNND2Q9UQB3 1225 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms