RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 CTIFO43310 598 aaKnown RBP9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 AKR1A1P14550 325 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 CDH6P55285 790 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 SP2Q02086 613 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 MAP2K5Q13163 448 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 BBS9Q3SYG4 887 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 DDX42Q86XP3 938 aaKnown RBP eCLIP9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 TMEM139Q8IV31 216 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 DAW1Q8N136 415 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 BBOF1Q8ND07 529 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 WHAMMQ8TF30 809 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 RNF139Q8WU17 664 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 BRI3BPQ8WY22 251 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 LENG1Q96BZ8 264 aaPredicted RBP9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 NSRP1Q9H0G5 558 aaKnown RBP9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 RNPEPQ9H4A4 650 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 TBK1Q9UHD2 729 aa9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 MYO5AQ9Y4I1 1855 aaKnown RBP9.85□□□□□ -0.83
TMEM39A-201ENST00000319172 GOLGA8MH3BSY2 632 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ATP8B1O43520 1251 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 UPP2O95045 317 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ZBED1O96006 694 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 NCKAP1LP55160 1127 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ITKQ08881 620 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 DRP2Q13474 957 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 CCDC14Q49A88 953 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 PDZD4Q76G19 769 aaPredicted RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 NOP9Q86U38 636 aaKnown RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 THEM5Q8N1Q8 247 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 TTC39CQ8N584 583 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ZSWIM2Q8NEG5 633 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 OR5B17Q8NGF7 314 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 DHX35Q9H5Z1 703 aaKnown RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 XPNPEP1Q9NQW7 623 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 HOMER3Q9NSC5 361 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 PRG3Q9Y2Y8 225 aaPredicted RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 SLC15A5A6NIM6 579 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 LACTBL1A8MY62 500 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 F5H423 210 aaPredicted RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ZC3H11AO75152 810 aaKnown RBP eCLIP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 PSEN2P49810 448 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 TSPY1Q01534 308 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 CUL1Q13616 776 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 FAM110CQ1W6H9 321 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 SH3D19Q5HYK7 790 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 FAM117BQ6P1L5 589 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 TAOK1Q7L7X3 1001 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 SLC9A9Q8IVB4 645 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 GPATCH11Q8N954 259 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 SHCBP1Q8NEM2 672 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 TAS2R14Q9NYV8 317 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 POLIQ9UNA4 740 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 MYH1P12882 1939 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 CHD4Q14839 1912 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ARHGEF37A1IGU5 675 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 CREB3O43889 395 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 CD4P01730 458 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 YY1P25490 414 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ZNF131P52739 623 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 GABPB1Q06547 395 aaPredicted RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 DCAF4L1Q3SXM0 396 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 APTXQ7Z2E3 356 aaKnown RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ZC3H18Q86VM9 953 aaKnown RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 INTUQ9ULD6 942 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 UBQLN1Q9UMX0 589 aaKnown RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 LRP5O75197 1615 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 KBTBD13C9JR72 458 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 GOLGA8KD6RF30 607 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 PODXLO00592 558 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 RAD51CO43502 376 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 B3GAT3O94766 335 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 KRT7P08729 469 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 GBP1P32455 592 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ITIH3Q06033 890 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 RWDD4Q6NW29 188 aaKnown RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 PLPPR4Q7Z2D5 763 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 NSMCE1Q8WV22 266 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ZBED3Q96IU2 234 aaPredicted RBP9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 ZBED2Q9BTP6 218 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 XPNPEP3Q9NQH7 507 aa9.84□□□□□ -0.83
TMEM39A-201ENST00000319172 CHRNA3P32297 505 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 GNL1P36915 607 aaPredicted RBP9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 IFNAR2P48551 515 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 GOLGA7BQ2TAP0 167 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 ZNF677Q86XU0 584 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 USP38Q8NB14 1042 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 URGCPQ8TCY9 931 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 MORC4Q8TE76 937 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 SOCS4Q8WXH5 440 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 PNKPQ96T60 521 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 SHANK3Q9BYB0 1731 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 N4BP2Q86UW6 1770 aaPredicted RBP9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 GHRP10912 638 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 PAPD7Q5XG87 772 aaKnown RBP9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 JADE1Q6IE81 842 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 C1orf228Q6PIY5 440 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 CROCCP2Q86T23 111 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 CCDC13Q8IYE1 715 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 FEZF2Q8TBJ5 459 aa9.83□□□□□ -0.84
TMEM39A-201ENST00000319172 ZNF606Q8WXB4 792 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms