RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GPD1LQ8N335 351 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 ZBED2Q9BTP6 218 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 SLC7A5P2Q9GIP4 190 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 KPNA4O00629 521 aaPredicted RBP14.5□□□□□ -0.09
CSPG4-201ENST00000308508 SLC16A4O15374 487 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 CASP1P29466 404 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 DUOXA2Q1HG44 320 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 TMED8Q6PL24 325 aaPredicted RBP14.5□□□□□ -0.09
CSPG4-201ENST00000308508 IL17REQ8NFR9 667 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 SERPINB12Q96P63 405 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 ACCSLQ4AC99 568 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 SUGP1Q8IWZ8 645 aaKnown RBP14.5□□□□□ -0.09
CSPG4-201ENST00000308508 URGCPQ8TCY9 931 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 STK33Q9BYT3 514 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 PKP3Q9Y446 797 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 PPP3CCP48454 512 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 KRT76Q01546 638 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 TOB2Q14106 344 aaPredicted RBP14.5□□□□□ -0.09
CSPG4-201ENST00000308508 RBAKQ9NYW8 714 aaPredicted RBP14.5□□□□□ -0.09
CSPG4-201ENST00000308508 HPS5Q9UPZ3 1129 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 SSU72P8A0A1W2PR75 194 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 MLNP12872 115 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 EIF2B2P49770 351 aaKnown RBP14.5□□□□□ -0.09
CSPG4-201ENST00000308508 NCKAP1LP55160 1127 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 TRIM51Q9BSJ1 452 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 VCPKMTQ9H867 229 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 IL1RL2Q9HB29 575 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 CD274Q9NZQ7 290 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 TJP2Q9UDY2 1190 aa14.5□□□□□ -0.09
CSPG4-201ENST00000308508 ADGRA2Q96PE1 1338 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 MTFR1Q15390 333 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 CHI3L2Q15782 390 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 C4orf22Q6V702 233 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 CNPY3Q9BT09 278 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 CTNNAL1Q9UBT7 734 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 STX7O15400 261 aaKnown RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 CYFIP1Q7L576 1253 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 ZIM3Q96PE6 472 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 ISCUQ9H1K1 167 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 SMARCAD1Q9H4L7 1026 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 DYRK4Q9NR20 520 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 RGL1Q9NZL6 768 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 SPATA2Q9UM82 520 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 PKN2Q16513 984 aaKnown RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 EEPD1Q7L9B9 569 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 PRKAG2Q9UGJ0 569 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 TXNRD1Q16881 649 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 C6orf203Q9P0P8 240 aaPredicted RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 WDR35Q9P2L0 1181 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 ARIH1Q9Y4X5 557 aaPredicted RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 IL12RB1P42701 662 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 RGS4P49798 205 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 ARMC3Q5W041 872 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 TWF2Q6IBS0 349 aaKnown RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 MRPL48Q96GC5 212 aaKnown RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 SERPINH1P50454 418 aaKnown RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 GEMIN4P57678 1058 aaKnown RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 GTF2H3Q13889 308 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 KDM7AQ6ZMT4 941 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 SCUBE1Q8IWY4 988 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 HNRNPLLQ8WVV9 542 aaKnown RBP14.49□□□□□ -0.09
CSPG4-201ENST00000308508 SIK2Q9H0K1 926 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 PAK5Q9P286 719 aa14.49□□□□□ -0.09
CSPG4-201ENST00000308508 A0A1B0GTH6 734 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 DGKIO75912 1065 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 RALAP11233 206 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 TMEM179Q6ZVK1 233 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 C18orf8Q96DM3 657 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 FAM49AQ9H0Q0 323 aaPredicted RBP14.48□□□□□ -0.09
CSPG4-201ENST00000308508 PLEKHA5Q9HAU0 1116 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 CYP2D7A0A087X1C5 515 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 CLRN2A0PK11 232 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 POTECB2RU33 542 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 MAGEA4P43358 317 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 WEE2P0C1S8 567 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 MTF1Q14872 753 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 CHMP1BQ7LBR1 199 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 FAR2Q96K12 515 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 CENPXA8MT69 81 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 KRT6BP04259 564 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 KRT6CP48668 564 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 ATPAF2Q8N5M1 289 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 RBM12Q9NTZ6 932 aaKnown RBP14.48□□□□□ -0.09
CSPG4-201ENST00000308508 SCTRP47872 440 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 PURAQ00577 322 aaKnown RBP14.48□□□□□ -0.09
CSPG4-201ENST00000308508 PTPN12Q05209 780 aaKnown RBP14.48□□□□□ -0.09
CSPG4-201ENST00000308508 ARMC4Q5T2S8 1044 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 DYNLL2Q96FJ2 89 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 POLIQ9UNA4 740 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 RRM2P31350 389 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 C11orf88Q6PI97 169 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 SNX31Q8N9S9 440 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 SPON2Q9BUD6 331 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 ATAD3AQ9NVI7 634 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 V9GYQ6 96 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 PSMD14O00487 310 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 KCNQ3O43525 872 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 QARSP47897 775 aaKnown RBP14.48□□□□□ -0.09
CSPG4-201ENST00000308508 C1DQ13901 141 aaKnown RBP14.48□□□□□ -0.09
CSPG4-201ENST00000308508 COL23A1Q86Y22 540 aaPredicted RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms