RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 GALCP54803 685 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 KLC1Q07866 573 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 SLC29A2Q14542 456 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 ACAP1Q15027 740 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 GLRA4Q5JXX5 417 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 LRRC34Q8IZ02 419 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 SLC7A14Q8TBB6 771 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 MMP19Q99542 508 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 KATNAL1Q9BW62 490 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 RNF14Q9UBS8 474 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 SNX9Q9Y5X1 595 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 POLR1AO95602 1720 aaPredicted RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 NUP160Q12769 1436 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 ECE2O60344 883 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 GUCA1CO95843 209 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 PGBD3Q8N328 593 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 CELF1Q92879 486 aaKnown RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 MTFMTQ96DP5 389 aaKnown RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 LATS2Q9NRM7 1088 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 UBP1Q9NZI7 540 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 APPL1Q9UKG1 709 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 TAF6LQ9Y6J9 622 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 ATP5HO75947 161 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 MADCAM1Q13477 382 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 PPP1R13LQ8WUF5 828 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 CCSER1Q9C0I3 900 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 AGAP1Q9UPQ3 857 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 TP73O15350 636 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 CALB1P05937 261 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 ABCB1P08183 1280 aaPredicted RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 GPSM2P81274 684 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 TRIM32Q13049 653 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 SPP2Q13103 211 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 FASTKD5Q7L8L6 764 aaKnown RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 CHMP1BQ7LBR1 199 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 GPD1LQ8N335 351 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 BEST2Q8NFU1 509 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 PAWRQ96IZ0 340 aaKnown RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 A8MX80 341 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 ZBTB7AO95365 584 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 GCFC2P16383 781 aaKnown RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 CDC16Q13042 620 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 COQ7Q99807 217 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 POLG2Q9UHN1 485 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 IFNA8P32881 189 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 CYP2C19P33261 490 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 FEN1P39748 380 aaKnown RBP13.23□□□□□ -0.29
USP38-201ENST00000307017 NFIL3Q16649 462 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 BARGINQ6ZT62 677 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 ELMOD1Q8N336 334 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 TMC2Q8TDI7 906 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 PACSIN1Q9BY11 444 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 GPATCH2LQ9NWQ4 482 aa13.23□□□□□ -0.29
USP38-201ENST00000307017 FNTAP49354 379 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 TEX9Q8N6V9 391 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 RNF148Q8N7C7 305 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 DDX50Q9BQ39 737 aaKnown RBP13.22□□□□□ -0.29
USP38-201ENST00000307017 MID2Q9UJV3 735 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 FAM47DPA6NHR8 397 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 PPP1R37O75864 691 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 ATP12AP54707 1039 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 ZNF200P98182 395 aaPredicted RBP13.22□□□□□ -0.29
USP38-201ENST00000307017 POP1Q99575 1024 aaKnown RBP13.22□□□□□ -0.29
USP38-201ENST00000307017 REEP2Q9BRK0 252 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 NOD2Q9HC29 1040 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 SNX12Q9UMY4 172 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 PCDHGB4Q9UN71 923 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 PRKAB1Q9Y478 270 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 COMTP21964 271 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 QRICH1Q2TAL8 776 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 CCDC149Q6ZUS6 474 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 CASKIN2Q8WXE0 1202 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 MANSC1Q9H8J5 431 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 MYO1DO94832 1006 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 GTF2H3Q13889 308 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 INPP5AQ14642 412 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 ZSCAN18Q8TBC5 510 aaPredicted RBP13.22□□□□□ -0.29
USP38-201ENST00000307017 CALR3Q96L12 384 aaKnown RBP13.22□□□□□ -0.29
USP38-201ENST00000307017 ATP6V1HQ9UI12 483 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 DTNAQ9Y4J8 743 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 ATP10DQ9P241 1426 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 ARAP3Q8WWN8 1544 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 ZNF263O14978 683 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 TPP2P29144 1249 aaPredicted RBP13.22□□□□□ -0.29
USP38-201ENST00000307017 PPARGP37231 505 aaPredicted RBP13.22□□□□□ -0.29
USP38-201ENST00000307017 DCAF6Q58WW2 860 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 MARK4Q96L34 752 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 TJP2Q9UDY2 1190 aa13.22□□□□□ -0.29
USP38-201ENST00000307017 M0R3G1 203 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 SMAPO00193 183 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 CPSF4O95639 269 aaKnown RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 FAM86B2P0C5J1 330 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 CCNA1P78396 465 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 EFCAB3Q8N7B9 438 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 DNAJC7Q99615 494 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 PRPF18Q99633 342 aaKnown RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 RPAP3Q9H6T3 665 aaPredicted RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 PNMA3Q9UL41 463 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 LEMD3Q9Y2U8 911 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 NUP153P49790 1475 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms