RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 LIMA1Q9UHB6 759 aaKnown RBP12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 GJD2Q9UKL4 321 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 SNX5Q9Y5X3 404 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 ZNF536O15090 1300 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 A0A1B0GTH6 734 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 RFX1P22670 979 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 RANBP1P43487 201 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 EPHB1P54762 984 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 FBXW10Q5XX13 1052 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 OR6B2Q6IFH4 312 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 HNRNPLLQ8WVV9 542 aaKnown RBP12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 DPF3Q92784 378 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 FAF2Q96CS3 445 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 SEZ6LQ9BYH1 1024 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 ING2Q9H160 280 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 UNC93B1Q9H1C4 597 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 ITIH6Q6UXX5 1313 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 PIK3CDO00329 1044 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 CYTH3O43739 400 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 NR3C1P04150 777 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 TAC1P20366 129 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 CASP1P29466 404 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 CACNB2Q08289 660 aaPredicted RBP12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 STAT4Q14765 748 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 CCL14Q16627 93 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 CNPY4Q8N129 248 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 CATSPER1Q8NEC5 780 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 RFFLQ8WZ73 363 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 LRRC1Q9BTT6 524 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 WNT8AQ9H1J5 351 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 FIS1Q9Y3D6 152 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 DUSP11O75319 330 aaKnown RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 GNAT1P11488 350 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 HSD17B4P51659 736 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 CORO7P57737 925 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 TFAMQ00059 246 aaKnown RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 KCNB1Q14721 858 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 MTF1Q14872 753 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 SHC4Q6S5L8 630 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 MYLK4Q86YV6 388 aaPredicted RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 TRIM59Q8IWR1 403 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 ANKLE1Q8NAG6 615 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 ATP11CQ8NB49 1132 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 TMEM35BQ8NCS4 154 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 MLXIPLQ9NP71 852 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 TBC1D22BQ9NU19 505 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 SUFUQ9UMX1 484 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 OTOFQ9HC10 1997 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 PRR29P0C7W0 189 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 ANXA13P27216 316 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 RARS2Q5T160 578 aaKnown RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 PCNX4Q63HM2 1172 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 WWP1Q9H0M0 922 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 IRAK1P51617 712 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 MORF4L2Q15014 288 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 COL13A1Q5TAT6 717 aaPredicted RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 TLK2Q86UE8 772 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 CLEC4DQ8WXI8 215 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 SNF8Q96H20 258 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 STARD7Q9NQZ5 370 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 ZC4H2Q9NQZ6 224 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 ATAD5Q96QE3 1844 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 CCND1P24385 295 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 PSMA2P25787 234 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 USP11P51784 963 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 SOX10P56693 466 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 AGBL2Q5U5Z8 902 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 PDXDC1Q6P996 788 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 CCDC137Q6PK04 289 aaKnown RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 MAMDC4Q6UXC1 1216 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 SPATA33Q96N06 139 aa12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 LBHD1Q9BQE6 289 aaPredicted RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 NXF1Q9UBU9 619 aaKnown RBP12.49□□□□□ -0.41
SYNGAP1-201ENST00000293748 RNF103-CHMP3A0A140T963 221 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 CFAP69A5D8W1 941 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 DCDC2CA8MYV0 355 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 NVLO15381 856 aaKnown RBP12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 SGPL1O95470 568 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 HNRNPCP07910 306 aaKnown RBP eCLIP12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 NBPF20Q3BBV1 942 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 RABGAP1LQ5R372 815 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 SLFN12LQ6IEE8 588 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 MIS18BP1Q6P0N0 1132 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 TEX9Q8N6V9 391 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 TRPV6Q9H1D0 765 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 USP15Q9Y4E8 981 aaPredicted RBP12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 SLC4A7Q9Y6M7 1214 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 INO80B-WBP1J3KQ70 363 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 DIAPH2O60879 1101 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 LSP1P33241 339 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 CUL3Q13618 768 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 LRRC14Q15048 493 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 PGM5Q15124 567 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 DGKDQ16760 1214 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 CEP55Q53EZ4 464 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 XXYLT1Q8NBI6 393 aa12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 INO80BQ9C086 356 aaPredicted RBP12.48□□□□□ -0.41
SYNGAP1-201ENST00000293748 HPCAL4Q9UM19 191 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms