RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZBBXA8MT70 800 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 RECQL4O94761 1208 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 C22orf31O95567 290 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 AKAP5P24588 427 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 GRK4P32298 578 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 ADCY8P40145 1251 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 OLFML2BQ68BL8 750 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 JADE1Q6IE81 842 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 BAP1Q92560 729 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 SEPT8Q92599 483 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 DNAJC25-GNG10A0A024R161 153 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 EDIL3O43854 480 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 TADA2AO75478 443 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 B3GAT3O94766 335 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 GBP1P32455 592 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 ELF1P32519 619 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 PRKCIP41743 596 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 SLC1A1P43005 524 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 DRP2Q13474 957 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 CCDC62Q6P9F0 684 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 SLC20A1Q8WUM9 679 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 AP1M1Q9BXS5 423 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 STMN4Q9H169 189 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-201ENST00000254950 ZWILCHQ9H900 591 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 STAP1Q9ULZ2 295 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 H7C0C1 242 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 SART1O43290 800 aaKnown RBP12.3□□□□□ -0.44
VPS4A-201ENST00000254950 ATP5OP48047 213 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 FBXO47Q5MNV8 452 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 SLC47A2Q86VL8 602 aa12.3□□□□□ -0.44
VPS4A-201ENST00000254950 KRT7P08729 469 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 VDRP11473 427 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 DARSP14868 501 aaKnown RBP12.29□□□□□ -0.44
VPS4A-201ENST00000254950 TNFSF9P41273 254 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 PRMT2P55345 433 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 SLAIN1Q8ND83 568 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 Q9Y3F1 56 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 COL4A5P29400 1685 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 HNRNPH3P31942 346 aaKnown RBP12.29□□□□□ -0.44
VPS4A-201ENST00000254950 ZNF211Q13398 564 aaPredicted RBP12.29□□□□□ -0.44
VPS4A-201ENST00000254950 MTMR3Q13615 1198 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 PHLDB3Q6NSJ2 640 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 MAMDC4Q6UXC1 1216 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 CEP120Q8N960 986 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 KAT5Q92993 513 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 THAP2Q9H0W7 228 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 PLEKHA5Q9HAU0 1116 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 GRID2IPA4D2P6 1211 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 ATF2P15336 505 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 OR1G1P47890 313 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 RGS7P49802 495 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 B3GNT9Q6UX72 402 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 TSHZ1Q6ZSZ6 1077 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 BBOF1Q8ND07 529 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 C1orf131Q8NDD1 294 aaKnown RBP12.29□□□□□ -0.44
VPS4A-201ENST00000254950 GDAP1L1Q96MZ0 367 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 HINFPQ9BQA5 517 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 EPB41L5Q9HCM4 733 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 UBN1Q9NPG3 1134 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 SRRDQ9UH36 339 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 DUSP10Q9Y6W6 482 aa12.29□□□□□ -0.44
VPS4A-201ENST00000254950 TREHO43280 583 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ECEL1O95672 775 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 APLP1P51693 650 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 MCL1Q07820 350 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 SNX1Q13596 522 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ZBTB10Q96DT7 871 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.28□□□□□ -0.442e-6■■■□□ 16.1
VPS4A-201ENST00000254950 PACSIN1Q9BY11 444 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 FAM114A2Q9NRY5 505 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 PRG3Q9Y2Y8 225 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-201ENST00000254950 PCDHB7Q9Y5E2 793 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ATMINO43313 823 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-201ENST00000254950 UPP2O95045 317 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ASGR1P07306 291 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 GUCY2FP51841 1108 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 DYNLT1P63172 113 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 PTPN11Q06124 597 aaPredicted RBP12.28□□□□□ -0.44
VPS4A-201ENST00000254950 TDRD10Q5VZ19 366 aaKnown RBP12.28□□□□□ -0.44
VPS4A-201ENST00000254950 CST9Q5W186 159 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 WDR59Q6PJI9 974 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 OR5B17Q8NGF7 314 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 NSMCE1Q8WV22 266 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 PCSK1NQ9UHG2 260 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 CCDC151A5D8V7 595 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 MCF2LO15068 1137 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 PQBP1O60828 265 aaKnown RBP12.28□□□□□ -0.44
VPS4A-201ENST00000254950 TJP3O95049 919 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 POU5F1BQ06416 359 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 TFDP2Q14188 446 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ARL13BQ3SXY8 428 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 TAPT1Q6NXT6 567 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 APTXQ7Z2E3 356 aaKnown RBP12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ELMO3Q96BJ8 720 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 DDX27Q96GQ7 796 aaKnown RBP12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ZNF518BQ9C0D4 1074 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 PTPN22Q9Y2R2 807 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 C2CD2Q9Y426 696 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 ALG6Q9Y672 507 aa12.28□□□□□ -0.44
VPS4A-201ENST00000254950 SMIM23A6NLE4 172 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms