RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ZCWPW1Q9H0M4 648 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 NGRNQ9NPE2 291 aaKnown RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 TBC1D22BQ9NU19 505 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 HOXC10Q9NYD6 342 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 RABGEF1Q9UJ41 708 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 CFAP99D6REC4 459 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 CRKP46108 304 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 KCNJ1P48048 391 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 USP11P51784 963 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 MTTPP55157 894 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 TRMT5Q32P41 509 aaKnown RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 EFHC1Q5JVL4 640 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 CWF19L1Q69YN2 538 aaKnown RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 ENGASEQ8NFI3 743 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 ZNF184Q99676 751 aaPredicted RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 RUBCNLQ9H714 662 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 CYP39A1Q9NYL5 469 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 PIM2Q9P1W9 311 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 IP6K2Q9UHH9 426 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 DUSP10Q9Y6W6 482 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 SPATA31A3Q5VYP0 1347 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 DDHD2O94830 711 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 MMP10P09238 476 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 PAMP19021 973 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 NSUN2Q08J23 767 aaKnown RBP eCLIP10.94□□□□□ -0.66
VCL-201ENST00000211998 KNOP1Q1ED39 458 aaKnown RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 Q3C1V9 767 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 CYFIP1Q7L576 1253 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 CLVS1Q8IUQ0 354 aaPredicted RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 TBC1D10CQ8IV04 446 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 CCDC60Q8IWA6 550 aaPredicted RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 TAGAPQ8N103 731 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 FNDC3AQ9Y2H6 1198 aaKnown RBP10.94□□□□□ -0.66
VCL-201ENST00000211998 COMMD3-BMI1R4GMX3 469 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 ABCB11O95342 1321 aa10.94□□□□□ -0.66
VCL-201ENST00000211998 TET3O43151 1660 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 CYP2D7A0A087X1C5 515 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 A0A1W2PQJ5 194 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 SMNDC1O75940 238 aaKnown RBP eCLIP10.93□□□□□ -0.66
VCL-201ENST00000211998 PRELPP51888 382 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 STXBP2Q15833 593 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 SCARA5Q6ZMJ2 495 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 MIGA2Q7L4E1 593 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 ZNF554Q86TJ5 538 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 TTC8Q8TAM2 541 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 GDPD5Q8WTR4 605 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 PPP1R14BQ96C90 147 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 KLHL8Q9P2G9 620 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 A2ML1A8K2U0 1454 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 TBKBP1A7MCY6 615 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 TNFAIP8O95379 198 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 GLI1P08151 1106 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 MYL2P10916 166 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 PRLRP16471 622 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 CDH2P19022 906 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 HADHAP40939 763 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 CTTNQ14247 550 aaKnown RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 MAPK11Q15759 364 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 PFKFB3Q16875 520 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 DSTYKQ6XUX3 929 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 MB21D2Q8IYB1 491 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 ZCCHC7Q8N3Z6 543 aaKnown RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 SLC25A41Q8N5S1 370 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 MTERF3Q96E29 417 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 RNPEPL1Q9HAU8 725 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 PCSK1NQ9UHG2 260 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 PCDHA6Q9UN73 950 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 PCDHA8Q9Y5H6 950 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 MROH7-TTC4A0A0A0MT08 1334 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 ZSCAN9O15535 394 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 TRAPPC3O43617 180 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 GSNP06396 782 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 PDAP1Q13442 181 aaKnown RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 ZNF667Q5HYK9 610 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 SYCP2LQ5T4T6 812 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 VPS50Q96JG6 964 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 FAM20AQ96MK3 541 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 EML4Q9HC35 981 aaKnown RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 NSMCE4AQ9NXX6 385 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 SNX13Q9Y5W8 968 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 TPST1O60507 370 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 GH2P01242 217 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 CCDC142Q17RM4 750 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 C3orf62Q6ZUJ4 267 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 RNF135Q8IUD6 432 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 NDUFAF2Q8N183 169 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 SH3RF3Q8TEJ3 882 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 LENG1Q96BZ8 264 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 ADCY10Q96PN6 1610 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 NDNQ99608 321 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 MRPS26Q9BYN8 205 aaKnown RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 TOPORSQ9NS56 1045 aaPredicted RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 OLA1Q9NTK5 396 aaKnown RBP10.93□□□□□ -0.66
VCL-201ENST00000211998 AIPL1Q9NZN9 384 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 TAGLN3Q9UI15 199 aa10.93□□□□□ -0.66
VCL-201ENST00000211998 A8MXQ7 604 aa10.92□□□□□ -0.66
VCL-201ENST00000211998 RTN2O75298 545 aa10.92□□□□□ -0.66
VCL-201ENST00000211998 WEE2P0C1S8 567 aa10.92□□□□□ -0.66
VCL-201ENST00000211998 SRGAP2CP0DJJ0 459 aa10.92□□□□□ -0.66
VCL-201ENST00000211998 HOXA13P31271 388 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms