RNA–Protein interactions for RNA: YNL025C

SSN8, Transcript of Cyclin-like component of the RNA polymerase II holoenzyme, yeast

Gene SSN8, Length 972 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSN8	YNL025C	MCX1	P38323	520 aa	Predicted RBP	4.73	□□□□□ -1.65
SSN8	YNL025C	TFB3	Q03290	321 aa		4.73	□□□□□ -1.65
SSN8	YNL025C	UBP15	P50101	1230 aa		4.72	□□□□□ -1.65
SSN8	YNL025C	ISR1	Q06098	443 aa	Known RBP	4.72	□□□□□ -1.65
SSN8	YNL025C	WTM2	Q12206	467 aa		4.72	□□□□□ -1.65
SSN8	YNL025C	AIM44	Q99299	758 aa		4.72	□□□□□ -1.65
SSN8	YNL025C	SUP45	P12385	437 aa	Known RBP	4.71	□□□□□ -1.66
SSN8	YNL025C	YDJ1	P25491	409 aa	Known RBP	4.71	□□□□□ -1.66
SSN8	YNL025C	UTR2	P32623	467 aa		4.71	□□□□□ -1.66
SSN8	YNL025C	SLA1	P32790	1244 aa		4.71	□□□□□ -1.66
SSN8	YNL025C	SSN3	P39073	555 aa		4.71	□□□□□ -1.66
SSN8	YNL025C	KRE33	P53914	1056 aa	Known RBP	4.71	□□□□□ -1.66
SSN8	YNL025C	YDR461C-A	Q2V2P7	80 aa		4.71	□□□□□ -1.66
SSN8	YNL025C	MAC1	P35192	417 aa		4.7	□□□□□ -1.66
SSN8	YNL025C	TBS1	P38114	1094 aa		4.7	□□□□□ -1.66
SSN8	YNL025C	DAT1	P13483	248 aa	Known RBP	4.69	□□□□□ -1.66
SSN8	YNL025C	YCK2	P23292	546 aa	Known RBP	4.69	□□□□□ -1.66
SSN8	YNL025C	ISF1	P32488	338 aa		4.69	□□□□□ -1.66
SSN8	YNL025C	AMN1	P38285	549 aa	Predicted RBP	4.69	□□□□□ -1.66
SSN8	YNL025C	PKC1	P24583	1151 aa		4.68	□□□□□ -1.66
SSN8	YNL025C	BIO2	P32451	375 aa		4.68	□□□□□ -1.66
SSN8	YNL025C	HAL5	P38970	855 aa	Known RBP	4.68	□□□□□ -1.66
SSN8	YNL025C	SUM1	P46676	1062 aa		4.68	□□□□□ -1.66
SSN8	YNL025C	GLT1	Q12680	2145 aa	Known RBP	4.67	□□□□□ -1.66
SSN8	YNL025C	AHP1	P38013	176 aa	Known RBP	4.67	□□□□□ -1.66
SSN8	YNL025C	SLX8	P40072	274 aa		4.67	□□□□□ -1.66
SSN8	YNL025C	LSB6	P42951	607 aa		4.67	□□□□□ -1.66
SSN8	YNL025C	YDR215C	Q12240	137 aa		4.67	□□□□□ -1.66
SSN8	YNL025C	BOI2	P39969	1040 aa		4.66	□□□□□ -1.66
SSN8	YNL025C	IRC24	P40580	263 aa		4.66	□□□□□ -1.66
SSN8	YNL025C	HDA3	Q06623	655 aa		4.66	□□□□□ -1.66
SSN8	YNL025C	TY1A-DR3	Q12441	440 aa		4.66	□□□□□ -1.66
SSN8	YNL025C	ENO2	P00925	437 aa	Known RBP	4.65	□□□□□ -1.67
SSN8	YNL025C	SOH1	P38633	127 aa		4.65	□□□□□ -1.67
SSN8	YNL025C	HGH1	P48362	394 aa	Known RBP	4.65	□□□□□ -1.67
SSN8	YNL025C	RIM21	P48565	533 aa		4.65	□□□□□ -1.67
SSN8	YNL025C	SLN1	P39928	1220 aa	Predicted RBP	4.64	□□□□□ -1.67
SSN8	YNL025C	MCA1	Q08601	432 aa		4.64	□□□□□ -1.67
SSN8	YNL025C	TAT1	P38085	619 aa		4.63	□□□□□ -1.67
SSN8	YNL025C	JJJ2	P46997	583 aa		4.63	□□□□□ -1.67
SSN8	YNL025C	YNL108C	P53929	270 aa		4.63	□□□□□ -1.67
SSN8	YNL025C	GPM1	P00950	247 aa	Known RBP	4.62	□□□□□ -1.67
SSN8	YNL025C	IRE1	P32361	1115 aa		4.62	□□□□□ -1.67
SSN8	YNL025C	MET1	P36150	593 aa		4.62	□□□□□ -1.67
SSN8	YNL025C	UTP7	P40055	554 aa	Known RBP	4.61	□□□□□ -1.67
SSN8	YNL025C	ALA1	P40825	983 aa	Known RBP	4.61	□□□□□ -1.67
SSN8	YNL025C	YFL034W	P43564	1073 aa		4.61	□□□□□ -1.67
SSN8	YNL025C	YPQ2	Q06328	317 aa		4.61	□□□□□ -1.67
SSN8	YNL025C	MCM1	P11746	286 aa		4.6	□□□□□ -1.67
SSN8	YNL025C	RDS2	P19541	446 aa	Known RBP	4.6	□□□□□ -1.67
SSN8	YNL025C	MRX10	Q05648	414 aa		4.6	□□□□□ -1.67
SSN8	YNL025C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SSN8	YNL025C	SWI5	P08153	709 aa		4.59	□□□□□ -1.67
SSN8	YNL025C	YJL007C	P47080	104 aa		4.59	□□□□□ -1.67
SSN8	YNL025C	YPL034W	Q03083	165 aa		4.59	□□□□□ -1.67
SSN8	YNL025C	RPP1A	P05318	106 aa	Predicted RBP	4.58	□□□□□ -1.68
SSN8	YNL025C	FPS1	P23900	669 aa		4.58	□□□□□ -1.68
SSN8	YNL025C	SHM1	P37292	490 aa	Predicted RBP	4.58	□□□□□ -1.68
SSN8	YNL025C	AIM9	P40053	627 aa	Known RBP	4.58	□□□□□ -1.68
SSN8	YNL025C	RLF2	Q12495	606 aa		4.58	□□□□□ -1.68
SSN8	YNL025C	PDC6	P26263	563 aa	Known RBP	4.57	□□□□□ -1.68
SSN8	YNL025C	BIM1	P40013	344 aa		4.57	□□□□□ -1.68
SSN8	YNL025C	DMA2	P53924	522 aa		4.57	□□□□□ -1.68
SSN8	YNL025C	ALO1	P54783	526 aa	Known RBP	4.57	□□□□□ -1.68
SSN8	YNL025C	PSH1	Q12161	406 aa		4.57	□□□□□ -1.68
SSN8	YNL025C	TSC13	Q99190	310 aa		4.57	□□□□□ -1.68
SSN8	YNL025C	RPS31	P05759	152 aa	Known RBP	4.56	□□□□□ -1.68
SSN8	YNL025C	LEU1	P07264	779 aa	Known RBP	4.56	□□□□□ -1.68
SSN8	YNL025C	RPS6A	P0CX37	236 aa	Known RBP	4.56	□□□□□ -1.68
SSN8	YNL025C	RPS6B	P0CX38	236 aa	Predicted RBP	4.56	□□□□□ -1.68
SSN8	YNL025C	ENO1	P00924	437 aa	Known RBP	4.55	□□□□□ -1.68
SSN8	YNL025C	TIF1	P10081	395 aa	Known RBP	4.55	□□□□□ -1.68
SSN8	YNL025C	NAP1	P25293	417 aa	Known RBP	4.55	□□□□□ -1.68
SSN8	YNL025C	PEP12	P32854	288 aa		4.55	□□□□□ -1.68
SSN8	YNL025C	OMA1	P36163	345 aa		4.55	□□□□□ -1.68
SSN8	YNL025C	MRPL16	P38064	232 aa		4.55	□□□□□ -1.68
SSN8	YNL025C	SPR3	P41901	512 aa		4.55	□□□□□ -1.68
SSN8	YNL025C	KNS1	P32350	737 aa	Predicted RBP	4.54	□□□□□ -1.68
SSN8	YNL025C	RTG2	P32608	588 aa	Known RBP	4.54	□□□□□ -1.68
SSN8	YNL025C	NTH2	P35172	780 aa		4.54	□□□□□ -1.68
SSN8	YNL025C	SIS2	P36024	562 aa		4.54	□□□□□ -1.68
SSN8	YNL025C	ATG32	P40458	529 aa		4.54	□□□□□ -1.68
SSN8	YNL025C	RPL34B	P40525	121 aa	Known RBP	4.54	□□□□□ -1.68
SSN8	YNL025C	YTA6	P40328	754 aa		4.52	□□□□□ -1.69
SSN8	YNL025C	PRY1	P47032	299 aa		4.52	□□□□□ -1.69
SSN8	YNL025C	ALD2	P47771	506 aa		4.52	□□□□□ -1.69
SSN8	YNL025C	INP52	P50942	1183 aa		4.52	□□□□□ -1.69
SSN8	YNL025C	UTP4	Q06679	776 aa	Known RBP	4.52	□□□□□ -1.69
SSN8	YNL025C	STB3	Q12427	513 aa		4.52	□□□□□ -1.69
SSN8	YNL025C	PDC5	P16467	563 aa	Known RBP	4.51	□□□□□ -1.69
SSN8	YNL025C	RGP1	P16664	663 aa		4.51	□□□□□ -1.69
SSN8	YNL025C	TY1A-DR2	Q03964	440 aa	Known RBP	4.51	□□□□□ -1.69
SSN8	YNL025C	CYT1	P07143	309 aa		4.5	□□□□□ -1.69
SSN8	YNL025C	PDI1	P17967	522 aa	Known RBP	4.5	□□□□□ -1.69
SSN8	YNL025C	UBP1	P25037	809 aa		4.5	□□□□□ -1.69
SSN8	YNL025C	HAP4	P14064	554 aa		4.49	□□□□□ -1.69
SSN8	YNL025C	PHO87	P25360	923 aa		4.49	□□□□□ -1.69
SSN8	YNL025C	MSC7	P38694	644 aa		4.49	□□□□□ -1.69
SSN8	YNL025C	YNL165W	P53891	406 aa		4.49	□□□□□ -1.69
SSN8	YNL025C	HEH2	Q03281	663 aa		4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 37.3 ms