RNA–Protein interactions for RNA: YIR009W

MSL1, Transcript of U2B component of U2 snRNP, yeast

Gene MSL1, Length 336 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSL1	YIR009W	BIM1	P40013	344 aa		4.67	□□□□□ -1.66
MSL1	YIR009W	MRX10	Q05648	414 aa		4.67	□□□□□ -1.66
MSL1	YIR009W	AHP1	P38013	176 aa	Known RBP	4.66	□□□□□ -1.66
MSL1	YIR009W	ATG32	P40458	529 aa		4.66	□□□□□ -1.66
MSL1	YIR009W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
MSL1	YIR009W	ENO1	P00924	437 aa	Known RBP	4.64	□□□□□ -1.67
MSL1	YIR009W	TIF1	P10081	395 aa	Known RBP	4.64	□□□□□ -1.67
MSL1	YIR009W	DIT1	P21623	536 aa		4.64	□□□□□ -1.67
MSL1	YIR009W	CEM1	P39525	442 aa		4.64	□□□□□ -1.67
MSL1	YIR009W	JJJ2	P46997	583 aa		4.64	□□□□□ -1.67
MSL1	YIR009W	HGH1	P48362	394 aa	Known RBP	4.64	□□□□□ -1.67
MSL1	YIR009W	MTC5	Q03897	1148 aa		4.64	□□□□□ -1.67
MSL1	YIR009W	SHM1	P37292	490 aa	Predicted RBP	4.63	□□□□□ -1.67
MSL1	YIR009W	LEO1	P38439	464 aa		4.63	□□□□□ -1.67
MSL1	YIR009W	AIM9	P40053	627 aa	Known RBP	4.63	□□□□□ -1.67
MSL1	YIR009W	ALA1	P40825	983 aa	Known RBP	4.63	□□□□□ -1.67
MSL1	YIR009W	YMR265C	Q03508	461 aa	Known RBP	4.63	□□□□□ -1.67
MSL1	YIR009W	YPQ2	Q06328	317 aa		4.63	□□□□□ -1.67
MSL1	YIR009W	SYT1	Q06836	1226 aa		4.63	□□□□□ -1.67
MSL1	YIR009W	SWI5	P08153	709 aa		4.62	□□□□□ -1.67
MSL1	YIR009W	IRE1	P32361	1115 aa		4.62	□□□□□ -1.67
MSL1	YIR009W	RTG2	P32608	588 aa	Known RBP	4.62	□□□□□ -1.67
MSL1	YIR009W	ICP55	P40051	511 aa		4.62	□□□□□ -1.67
MSL1	YIR009W	YDR461C-A	Q2V2P7	80 aa		4.62	□□□□□ -1.67
MSL1	YIR009W	PEP12	P32854	288 aa		4.61	□□□□□ -1.67
MSL1	YIR009W	MDJ1	P35191	511 aa		4.61	□□□□□ -1.67
MSL1	YIR009W	RPL34B	P40525	121 aa	Known RBP	4.61	□□□□□ -1.67
MSL1	YIR009W	KRE33	P53914	1056 aa	Known RBP	4.61	□□□□□ -1.67
MSL1	YIR009W	RPS31	P05759	152 aa	Known RBP	4.6	□□□□□ -1.67
MSL1	YIR009W	RPS6A	P0CX37	236 aa	Known RBP	4.6	□□□□□ -1.67
MSL1	YIR009W	RPS6B	P0CX38	236 aa	Predicted RBP	4.6	□□□□□ -1.67
MSL1	YIR009W	YFL034W	P43564	1073 aa		4.6	□□□□□ -1.67
MSL1	YIR009W	PSH1	Q12161	406 aa		4.6	□□□□□ -1.67
MSL1	YIR009W	PDC6	P26263	563 aa	Known RBP	4.59	□□□□□ -1.67
MSL1	YIR009W	YFL066C	P43538	392 aa		4.59	□□□□□ -1.67
MSL1	YIR009W	ADE12	P80210	433 aa	Known RBP	4.59	□□□□□ -1.67
MSL1	YIR009W	PHM7	Q12252	991 aa		4.59	□□□□□ -1.67
MSL1	YIR009W	AI1	P03875	834 aa		4.58	□□□□□ -1.68
MSL1	YIR009W	MCM1	P11746	286 aa		4.58	□□□□□ -1.68
MSL1	YIR009W	NTH2	P35172	780 aa		4.58	□□□□□ -1.68
MSL1	YIR009W	PUS1	Q12211	544 aa	Known RBP	4.58	□□□□□ -1.68
MSL1	YIR009W	TSC13	Q99190	310 aa		4.58	□□□□□ -1.68
MSL1	YIR009W	PDI1	P17967	522 aa	Known RBP	4.57	□□□□□ -1.68
MSL1	YIR009W	NSG2	P53898	299 aa		4.57	□□□□□ -1.68
MSL1	YIR009W	THI72	Q08579	599 aa		4.57	□□□□□ -1.68
MSL1	YIR009W	MRPL16	P38064	232 aa		4.56	□□□□□ -1.68
MSL1	YIR009W	YNL165W	P53891	406 aa		4.56	□□□□□ -1.68
MSL1	YIR009W	LEU1	P07264	779 aa	Known RBP	4.55	□□□□□ -1.68
MSL1	YIR009W	CYT1	P07143	309 aa		4.54	□□□□□ -1.68
MSL1	YIR009W	FPS1	P23900	669 aa		4.54	□□□□□ -1.68
MSL1	YIR009W	PHO87	P25360	923 aa		4.54	□□□□□ -1.68
MSL1	YIR009W	SPR3	P41901	512 aa		4.54	□□□□□ -1.68
MSL1	YIR009W	ALD2	P47771	506 aa		4.54	□□□□□ -1.68
MSL1	YIR009W	ACS2	P52910	683 aa	Known RBP	4.54	□□□□□ -1.68
MSL1	YIR009W	STB3	Q12427	513 aa		4.54	□□□□□ -1.68
MSL1	YIR009W	GPM1	P00950	247 aa	Known RBP	4.53	□□□□□ -1.68
MSL1	YIR009W	SIS2	P36024	562 aa		4.53	□□□□□ -1.68
MSL1	YIR009W	KTR7	P40504	517 aa		4.53	□□□□□ -1.68
MSL1	YIR009W	LSB3	P43603	459 aa	Known RBP	4.53	□□□□□ -1.68
MSL1	YIR009W	MLF3	P32047	452 aa		4.52	□□□□□ -1.69
MSL1	YIR009W	SBE2	P42223	864 aa	Known RBP	4.52	□□□□□ -1.69
MSL1	YIR009W	HAP4	P14064	554 aa		4.51	□□□□□ -1.69
MSL1	YIR009W	RGP1	P16664	663 aa		4.51	□□□□□ -1.69
MSL1	YIR009W	UBP1	P25037	809 aa		4.51	□□□□□ -1.69
MSL1	YIR009W	GAS4	Q08271	471 aa		4.51	□□□□□ -1.69
MSL1	YIR009W	Q0182	Q9ZZW1	134 aa		4.51	□□□□□ -1.69
MSL1	YIR009W	MSC7	P38694	644 aa		4.5	□□□□□ -1.69
MSL1	YIR009W	YTA6	P40328	754 aa		4.5	□□□□□ -1.69
MSL1	YIR009W	DMA2	P53924	522 aa		4.5	□□□□□ -1.69
MSL1	YIR009W	TY1A-DR2	Q03964	440 aa	Known RBP	4.5	□□□□□ -1.69
MSL1	YIR009W	TDA6	Q06466	467 aa		4.5	□□□□□ -1.69
MSL1	YIR009W	GAL2	P13181	574 aa		4.49	□□□□□ -1.69
MSL1	YIR009W	PDC5	P16467	563 aa	Known RBP	4.49	□□□□□ -1.69
MSL1	YIR009W	ROM1	P53046	1155 aa		4.49	□□□□□ -1.69
MSL1	YIR009W	YPR053C	Q6Q5F3	151 aa		4.49	□□□□□ -1.69
MSL1	YIR009W	RPP1A	P05318	106 aa	Predicted RBP	4.48	□□□□□ -1.69
MSL1	YIR009W	KNS1	P32350	737 aa	Predicted RBP	4.48	□□□□□ -1.69
MSL1	YIR009W	NGR1	P32831	672 aa	Known RBP	4.48	□□□□□ -1.69
MSL1	YIR009W	TTI1	P36097	1038 aa		4.48	□□□□□ -1.69
MSL1	YIR009W	HXT5	P38695	592 aa		4.48	□□□□□ -1.69
MSL1	YIR009W	CCT8	P47079	568 aa	Known RBP	4.48	□□□□□ -1.69
MSL1	YIR009W	UTP4	Q06679	776 aa	Known RBP	4.48	□□□□□ -1.69
MSL1	YIR009W	TGL4	P36165	910 aa		4.47	□□□□□ -1.69
MSL1	YIR009W	MCX1	P38323	520 aa	Predicted RBP	4.47	□□□□□ -1.69
MSL1	YIR009W	SKN7	P38889	622 aa		4.47	□□□□□ -1.69
MSL1	YIR009W	YNR014W	P53719	212 aa		4.47	□□□□□ -1.69
MSL1	YIR009W	SCD5	P34758	872 aa		4.46	□□□□□ -1.7
MSL1	YIR009W	MTO1	P53070	669 aa		4.46	□□□□□ -1.7
MSL1	YIR009W	YMR187C	Q03236	431 aa		4.46	□□□□□ -1.7
MSL1	YIR009W	BOI2	P39969	1040 aa		4.45	□□□□□ -1.7
MSL1	YIR009W	SKP1	P52286	194 aa		4.45	□□□□□ -1.7
MSL1	YIR009W	YCK2	P23292	546 aa	Known RBP	4.44	□□□□□ -1.7
MSL1	YIR009W	MET1	P36150	593 aa		4.44	□□□□□ -1.7
MSL1	YIR009W	HEH2	Q03281	663 aa		4.44	□□□□□ -1.7
MSL1	YIR009W	RPC31	P17890	251 aa		4.43	□□□□□ -1.7
MSL1	YIR009W	VAN1	P23642	535 aa		4.43	□□□□□ -1.7
MSL1	YIR009W	SUV3	P32580	737 aa		4.43	□□□□□ -1.7
MSL1	YIR009W	KAP122	P32767	1081 aa		4.43	□□□□□ -1.7
MSL1	YIR009W	CUS1	Q02554	436 aa	Predicted RBP	4.43	□□□□□ -1.7
MSL1	YIR009W	ECM23	Q02710	187 aa		4.43	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 8.1 ms