RNA–Protein interactions for RNA: YDR179C

CSN9, Transcript of Subunit of the Cop9 signalosome, yeast

Gene CSN9, Length 489 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSN9	YDR179C	DAL1	P32375	460 aa		4.32	□□□□□ -1.72
CSN9	YDR179C	YDR461C-A	Q2V2P7	80 aa		4.32	□□□□□ -1.72
CSN9	YDR179C	HGH1	P48362	394 aa	Known RBP	4.31	□□□□□ -1.72
CSN9	YDR179C	INP52	P50942	1183 aa		4.31	□□□□□ -1.72
CSN9	YDR179C	YNR014W	P53719	212 aa		4.31	□□□□□ -1.72
CSN9	YDR179C	YMR265C	Q03508	461 aa	Known RBP	4.31	□□□□□ -1.72
CSN9	YDR179C	MCM16	Q12262	181 aa		4.31	□□□□□ -1.72
CSN9	YDR179C	EMP47	P43555	445 aa		4.3	□□□□□ -1.72
CSN9	YDR179C	UTP13	Q05946	817 aa	Known RBP	4.3	□□□□□ -1.72
CSN9	YDR179C	SPT2	P06843	333 aa	Predicted RBP	4.29	□□□□□ -1.72
CSN9	YDR179C	TBS1	P38114	1094 aa		4.29	□□□□□ -1.72
CSN9	YDR179C	APL6	P46682	809 aa		4.29	□□□□□ -1.72
CSN9	YDR179C	MSN5	P52918	1224 aa		4.29	□□□□□ -1.72
CSN9	YDR179C	KRE33	P53914	1056 aa	Known RBP	4.29	□□□□□ -1.72
CSN9	YDR179C	ALO1	P54783	526 aa	Known RBP	4.29	□□□□□ -1.72
CSN9	YDR179C	UTR2	P32623	467 aa		4.28	□□□□□ -1.72
CSN9	YDR179C	TFB3	Q03290	321 aa		4.28	□□□□□ -1.72
CSN9	YDR179C	ISR1	Q06098	443 aa	Known RBP	4.28	□□□□□ -1.72
CSN9	YDR179C	GPM1	P00950	247 aa	Known RBP	4.27	□□□□□ -1.73
CSN9	YDR179C	DAT1	P13483	248 aa	Known RBP	4.27	□□□□□ -1.73
CSN9	YDR179C	BOI2	P39969	1040 aa		4.27	□□□□□ -1.73
CSN9	YDR179C	UBP15	P50101	1230 aa		4.27	□□□□□ -1.73
CSN9	YDR179C	AHP1	P38013	176 aa	Known RBP	4.26	□□□□□ -1.73
CSN9	YDR179C	WTM2	Q12206	467 aa		4.26	□□□□□ -1.73
CSN9	YDR179C	YDJ1	P25491	409 aa	Known RBP	4.25	□□□□□ -1.73
CSN9	YDR179C	ISF1	P32488	338 aa		4.24	□□□□□ -1.73
CSN9	YDR179C	SLA1	P32790	1244 aa		4.24	□□□□□ -1.73
CSN9	YDR179C	TY1A-DR3	Q12441	440 aa		4.24	□□□□□ -1.73
CSN9	YDR179C	SUP45	P12385	437 aa	Known RBP	4.23	□□□□□ -1.73
CSN9	YDR179C	SSN3	P39073	555 aa		4.23	□□□□□ -1.73
CSN9	YDR179C	PKC1	P24583	1151 aa		4.22	□□□□□ -1.73
CSN9	YDR179C	BIO2	P32451	375 aa		4.22	□□□□□ -1.73
CSN9	YDR179C	OMA1	P36163	345 aa		4.22	□□□□□ -1.73
CSN9	YDR179C	TAT1	P38085	619 aa		4.22	□□□□□ -1.73
CSN9	YDR179C	SOH1	P38633	127 aa		4.22	□□□□□ -1.73
CSN9	YDR179C	SUM1	P46676	1062 aa		4.22	□□□□□ -1.73
CSN9	YDR179C	PRY1	P47032	299 aa		4.22	□□□□□ -1.73
CSN9	YDR179C	ALA1	P40825	983 aa	Known RBP	4.21	□□□□□ -1.74
CSN9	YDR179C	YFL034W	P43564	1073 aa		4.21	□□□□□ -1.74
CSN9	YDR179C	RPP1A	P05318	106 aa	Predicted RBP	4.2	□□□□□ -1.74
CSN9	YDR179C	HAL5	P38970	855 aa	Known RBP	4.2	□□□□□ -1.74
CSN9	YDR179C	SLX8	P40072	274 aa		4.2	□□□□□ -1.74
CSN9	YDR179C	AVT1	P47082	602 aa		4.2	□□□□□ -1.74
CSN9	YDR179C	YNL108C	P53929	270 aa		4.2	□□□□□ -1.74
CSN9	YDR179C	HDA3	Q06623	655 aa		4.2	□□□□□ -1.74
CSN9	YDR179C	ENO2	P00925	437 aa	Known RBP	4.19	□□□□□ -1.74
CSN9	YDR179C	RIM21	P48565	533 aa		4.19	□□□□□ -1.74
CSN9	YDR179C	IRE1	P32361	1115 aa		4.18	□□□□□ -1.74
CSN9	YDR179C	UTP7	P40055	554 aa	Known RBP	4.18	□□□□□ -1.74
CSN9	YDR179C	JJJ2	P46997	583 aa		4.18	□□□□□ -1.74
CSN9	YDR179C	YJL007C	P47080	104 aa		4.18	□□□□□ -1.74
CSN9	YDR179C	RPL34B	P40525	121 aa	Known RBP	4.17	□□□□□ -1.74
CSN9	YDR179C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
CSN9	YDR179C	FPS1	P23900	669 aa		4.16	□□□□□ -1.74
CSN9	YDR179C	AIM9	P40053	627 aa	Known RBP	4.16	□□□□□ -1.74
CSN9	YDR179C	MCM1	P11746	286 aa		4.15	□□□□□ -1.75
CSN9	YDR179C	SWI5	P08153	709 aa		4.14	□□□□□ -1.75
CSN9	YDR179C	SIS2	P36024	562 aa		4.14	□□□□□ -1.75
CSN9	YDR179C	YTA6	P40328	754 aa		4.14	□□□□□ -1.75
CSN9	YDR179C	PDC5	P16467	563 aa	Known RBP	4.13	□□□□□ -1.75
CSN9	YDR179C	PDC6	P26263	563 aa	Known RBP	4.13	□□□□□ -1.75
CSN9	YDR179C	RTG2	P32608	588 aa	Known RBP	4.13	□□□□□ -1.75
CSN9	YDR179C	MET1	P36150	593 aa		4.13	□□□□□ -1.75
CSN9	YDR179C	BIM1	P40013	344 aa		4.13	□□□□□ -1.75
CSN9	YDR179C	MRX10	Q05648	414 aa		4.13	□□□□□ -1.75
CSN9	YDR179C	YPQ2	Q06328	317 aa		4.13	□□□□□ -1.75
CSN9	YDR179C	TSC13	Q99190	310 aa		4.13	□□□□□ -1.75
CSN9	YDR179C	RPS6A	P0CX37	236 aa	Known RBP	4.12	□□□□□ -1.75
CSN9	YDR179C	RPS6B	P0CX38	236 aa	Predicted RBP	4.12	□□□□□ -1.75
CSN9	YDR179C	TIF1	P10081	395 aa	Known RBP	4.12	□□□□□ -1.75
CSN9	YDR179C	RDS2	P19541	446 aa	Known RBP	4.12	□□□□□ -1.75
CSN9	YDR179C	SHM1	P37292	490 aa	Predicted RBP	4.12	□□□□□ -1.75
CSN9	YDR179C	LEO1	P38439	464 aa		4.12	□□□□□ -1.75
CSN9	YDR179C	ENO1	P00924	437 aa	Known RBP	4.11	□□□□□ -1.75
CSN9	YDR179C	KNS1	P32350	737 aa	Predicted RBP	4.11	□□□□□ -1.75
CSN9	YDR179C	NTH2	P35172	780 aa		4.11	□□□□□ -1.75
CSN9	YDR179C	MRPL16	P38064	232 aa		4.11	□□□□□ -1.75
CSN9	YDR179C	PSH1	Q12161	406 aa		4.11	□□□□□ -1.75
CSN9	YDR179C	LEU1	P07264	779 aa	Known RBP	4.1	□□□□□ -1.75
CSN9	YDR179C	ATG32	P40458	529 aa		4.1	□□□□□ -1.75
CSN9	YDR179C	STB3	Q12427	513 aa		4.1	□□□□□ -1.75
CSN9	YDR179C	HAP4	P14064	554 aa		4.09	□□□□□ -1.75
CSN9	YDR179C	PEP12	P32854	288 aa		4.09	□□□□□ -1.75
CSN9	YDR179C	SPR3	P41901	512 aa		4.09	□□□□□ -1.75
CSN9	YDR179C	AOS1	Q06624	347 aa		4.09	□□□□□ -1.75
CSN9	YDR179C	UTP4	Q06679	776 aa	Known RBP	4.09	□□□□□ -1.75
CSN9	YDR179C	RPS31	P05759	152 aa	Known RBP	4.08	□□□□□ -1.76
CSN9	YDR179C	CYT1	P07143	309 aa		4.08	□□□□□ -1.76
CSN9	YDR179C	PDI1	P17967	522 aa	Known RBP	4.08	□□□□□ -1.76
CSN9	YDR179C	GAS4	Q08271	471 aa		4.08	□□□□□ -1.76
CSN9	YDR179C	RGP1	P16664	663 aa		4.07	□□□□□ -1.76
CSN9	YDR179C	UBP1	P25037	809 aa		4.07	□□□□□ -1.76
CSN9	YDR179C	PHO87	P25360	923 aa		4.07	□□□□□ -1.76
CSN9	YDR179C	HEH2	Q03281	663 aa		4.07	□□□□□ -1.76
CSN9	YDR179C	TY1A-DR2	Q03964	440 aa	Known RBP	4.07	□□□□□ -1.76
CSN9	YDR179C	PGM1	P33401	570 aa	Known RBP	4.06	□□□□□ -1.76
CSN9	YDR179C	SCD5	P34758	872 aa		4.06	□□□□□ -1.76
CSN9	YDR179C	BUD9	P53226	547 aa		4.06	□□□□□ -1.76
CSN9	YDR179C	ELM1	P32801	640 aa		4.05	□□□□□ -1.76
CSN9	YDR179C	GIS1	Q03833	894 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 17.3 ms