RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 HSP90AB2PQ58FF8 381 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-221ENST00000641996 TPM3P06753 285 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 NGEFQ8N5V2 710 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 DNAI2Q9GZS0 605 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 MORC4Q8TE76 937 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 ZNF500O60304 480 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-221ENST00000641996 SETSIPP0DME0 302 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 PPP4R4Q6NUP7 873 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 MAP4K4O95819 1239 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-221ENST00000641996 MICAL1Q8TDZ2 1067 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 SRPK2P78362 688 aaKnown RBP4.42□□□□□ -1.7
SCN1A-221ENST00000641996 PAX3P23760 479 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 CLUAP1Q96AJ1 413 aa4.42□□□□□ -1.7
SCN1A-221ENST00000641996 ERBB3P21860 1342 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 IPO8O15397 1037 aaKnown RBP4.41□□□□□ -1.7
SCN1A-221ENST00000641996 TRIM6-TRIM34B2RNG4 842 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 RGS22Q8NE09 1264 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 TRIM34Q9BYJ4 488 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 BIRC2Q13490 618 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 TSPY4P0CV99 314 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 TSPY10P0CW01 314 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 GPS2Q13227 327 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 MAFGO15525 162 aa4.41□□□□□ -1.7
SCN1A-221ENST00000641996 DZIP1Q86YF9 867 aaKnown RBP4.41□□□□□ -1.7
SCN1A-221ENST00000641996 LMNB1P20700 586 aa4.4□□□□□ -1.7
SCN1A-221ENST00000641996 SWAP70Q9UH65 585 aa4.4□□□□□ -1.7
SCN1A-221ENST00000641996 RPAINQ86UA6 219 aa4.4□□□□□ -1.7
SCN1A-221ENST00000641996 GOPCQ9HD26 462 aa4.4□□□□□ -1.7
SCN1A-221ENST00000641996 RFX1P22670 979 aa4.4□□□□□ -1.71
SCN1A-221ENST00000641996 WDR75Q8IWA0 830 aaKnown RBP4.4□□□□□ -1.71
SCN1A-221ENST00000641996 AK7Q96M32 723 aa4.4□□□□□ -1.71
SCN1A-221ENST00000641996 ZNF280DQ6N043 979 aa4.4□□□□□ -1.71
SCN1A-221ENST00000641996 GRM1Q13255 1194 aa4.4□□□□□ -1.71
SCN1A-221ENST00000641996 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.39□□□□□ -1.71
SCN1A-221ENST00000641996 CCP110O43303 1012 aa4.39□□□□□ -1.71
SCN1A-221ENST00000641996 USP5P45974 858 aa4.39□□□□□ -1.71
SCN1A-221ENST00000641996 RIOK3O14730 519 aaKnown RBP4.39□□□□□ -1.71
SCN1A-221ENST00000641996 EP400NLQ6ZTU2 488 aa4.39□□□□□ -1.71
SCN1A-221ENST00000641996 SLMAPQ14BN4 828 aa4.39□□□□□ -1.71
SCN1A-221ENST00000641996 TMC1Q8TDI8 760 aa4.39□□□□□ -1.71
SCN1A-221ENST00000641996 DRC1Q96MC2 740 aa4.39□□□□□ -1.71
SCN1A-221ENST00000641996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-221ENST00000641996 C11orf95C9JLR9 678 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-221ENST00000641996 CCDC66A2RUB6 948 aa4.39□□□□□ -1.71
SCN1A-221ENST00000641996 PPFIA3O75145 1194 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 CC2D1AQ6P1N0 951 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-221ENST00000641996 HDAC9Q9UKV0 1011 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 PPME1Q9Y570 386 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 FAM161AQ3B820 660 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 CT47B1P0C2W7 299 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-221ENST00000641996 BTN2A1Q7KYR7 527 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 PRPF38AQ8NAV1 312 aaKnown RBP4.38□□□□□ -1.71
SCN1A-221ENST00000641996 PPP4R3CPQ6ZMV5 832 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 PDCL3Q9H2J4 239 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 RMI1Q9H9A7 625 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 IRAK4Q9NWZ3 460 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 GOLGA6L3A6NEY3 463 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 FANCIQ9NVI1 1328 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 TSPY2A6NKD2 308 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 ELL2O00472 640 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-221ENST00000641996 TSPY3P0CV98 308 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 TSPY8P0CW00 308 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 TSPY1Q01534 308 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 RETREG2Q8NC44 543 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 SPOCK3Q9BQ16 436 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 U2AF1L5P0DN76 240 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-221ENST00000641996 MS4A1P11836 297 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 U2AF1Q01081 240 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCN1A-221ENST00000641996 DEF6Q9H4E7 631 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 FOXD4L1Q9NU39 408 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 STK26Q9P289 416 aa4.38□□□□□ -1.71
SCN1A-221ENST00000641996 FOXD1Q16676 465 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 NBPF1Q3BBV0 1214 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 CFAP53Q96M91 514 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 ZHX3Q9H4I2 956 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 RIPOR2Q9Y4F9 1068 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 MSNP26038 577 aaKnown RBP4.37□□□□□ -1.71
SCN1A-221ENST00000641996 METTL14Q9HCE5 456 aaKnown RBP4.37□□□□□ -1.71
SCN1A-221ENST00000641996 PPP1R15AO75807 674 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-221ENST00000641996 PMFBP1Q8TBY8 1022 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 CARNS1A5YM72 827 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 TRIML1Q8N9V2 468 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 MSH5O43196 834 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 SMC3Q9UQE7 1217 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 TAX1BP1Q86VP1 789 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 FLCNQ8NFG4 579 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 KLHL42Q9P2K6 505 aa4.37□□□□□ -1.71
SCN1A-221ENST00000641996 hCG_2014768A0A024R1R8 64 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 NBPF11Q86T75 865 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 TCEAL9Q9UHQ7 104 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 DDRGK1Q96HY6 314 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 CCDC175P0C221 793 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 CEP120Q8N960 986 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 SH3BP1Q9Y3L3 701 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 CSPP1Q1MSJ5 1256 aa4.36□□□□□ -1.71
SCN1A-221ENST00000641996 CWC15Q9P013 229 aaKnown RBP4.36□□□□□ -1.71
SCN1A-221ENST00000641996 DIDO1Q9BTC0 2240 aaKnown RBP4.36□□□□□ -1.71
SCN1A-221ENST00000641996 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.36□□□□□ -1.71
SCN1A-221ENST00000641996 KCNA1Q09470 495 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms