RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 ZFYVE9O95405 1425 aa21.25■□□□□ 0.99
LINC00339-211ENST00000641009 RRBP1Q9P2E9 1410 aaKnown RBP21.25■□□□□ 0.99
LINC00339-211ENST00000641009 SENP3Q9H4L4 574 aaPredicted RBP21.24■□□□□ 0.99
LINC00339-211ENST00000641009 SPHKAPQ2M3C7 1700 aa21.23■□□□□ 0.99
LINC00339-211ENST00000641009 RIMS2Q9UQ26 1411 aa21.22■□□□□ 0.99
LINC00339-211ENST00000641009 CHD2O14647 1828 aaKnown RBP21.22■□□□□ 0.99
LINC00339-211ENST00000641009 CHGAP10645 457 aaKnown RBP21.21■□□□□ 0.99
LINC00339-211ENST00000641009 BCANQ96GW7 911 aa21.21■□□□□ 0.99
LINC00339-211ENST00000641009 NWD1Q149M9 1564 aa21.21■□□□□ 0.99
LINC00339-211ENST00000641009 KCNA6P17658 529 aa21.2■□□□□ 0.98
LINC00339-211ENST00000641009 PLEKHG1Q9ULL1 1385 aa21.18■□□□□ 0.98
LINC00339-211ENST00000641009 MED1Q15648 1581 aaPredicted RBP21.18■□□□□ 0.98
LINC00339-211ENST00000641009 PPP1R15AO75807 674 aaPredicted RBP21.18■□□□□ 0.98
LINC00339-211ENST00000641009 TMEM94Q12767 1356 aa21.18■□□□□ 0.98
LINC00339-211ENST00000641009 NKTRP30414 1462 aaKnown RBP21.16■□□□□ 0.98
LINC00339-211ENST00000641009 RBM33Q96EV2 1170 aaKnown RBP21.16■□□□□ 0.98
LINC00339-211ENST00000641009 HDGFP51858 240 aaKnown RBP21.15■□□□□ 0.98
LINC00339-211ENST00000641009 NUTM2DQ5VT03 806 aaPredicted RBP21.15■□□□□ 0.98
LINC00339-211ENST00000641009 NAIPQ13075 1403 aa21.15■□□□□ 0.98
LINC00339-211ENST00000641009 PROSER2Q86WR7 435 aaPredicted RBP21.14■□□□□ 0.98
LINC00339-211ENST00000641009 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.12■□□□□ 0.97
LINC00339-211ENST00000641009 ROBO1Q9Y6N7 1651 aa21.1■□□□□ 0.97
LINC00339-211ENST00000641009 CLTCL1P53675 1640 aa21.1■□□□□ 0.97
LINC00339-211ENST00000641009 ADAMTS13Q76LX8 1427 aa21.1■□□□□ 0.97
LINC00339-211ENST00000641009 DIP2AQ14689 1571 aa21.1■□□□□ 0.97
LINC00339-211ENST00000641009 KIF1BO60333 1816 aa21.09■□□□□ 0.97
LINC00339-211ENST00000641009 TBX22Q9Y458 520 aa21.08■□□□□ 0.97
LINC00339-211ENST00000641009 NRXN3Q9Y4C0 1643 aa21.07■□□□□ 0.96
LINC00339-211ENST00000641009 HFM1A2PYH4 1435 aa21.06■□□□□ 0.96
LINC00339-211ENST00000641009 TRPM2O94759 1503 aa21.06■□□□□ 0.96
LINC00339-211ENST00000641009 SOCS7O14512 581 aa21.06■□□□□ 0.96
LINC00339-211ENST00000641009 FAM135BQ49AJ0 1406 aa21.05■□□□□ 0.96
LINC00339-211ENST00000641009 MSH6P52701 1360 aa21.05■□□□□ 0.96
LINC00339-211ENST00000641009 ZNF326Q5BKZ1 582 aaKnown RBP21.02■□□□□ 0.96
LINC00339-211ENST00000641009 TRIM52Q96A61 297 aa21.01■□□□□ 0.95
LINC00339-211ENST00000641009 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.01■□□□□ 0.95
LINC00339-211ENST00000641009 SETBP1Q9Y6X0 1596 aa21.01■□□□□ 0.95
LINC00339-211ENST00000641009 PIK3R4Q99570 1358 aa21.01■□□□□ 0.95
LINC00339-211ENST00000641009 NEXMIFQ5QGS0 1516 aa21■□□□□ 0.95
LINC00339-211ENST00000641009 PTPRUQ92729 1446 aa20.99■□□□□ 0.95
LINC00339-211ENST00000641009 PHLPP1O60346 1717 aa20.99■□□□□ 0.95
LINC00339-211ENST00000641009 XRN1Q8IZH2 1706 aaKnown RBP20.98■□□□□ 0.95
LINC00339-211ENST00000641009 PHF23Q9BUL5 403 aaPredicted RBP20.97■□□□□ 0.95
LINC00339-211ENST00000641009 NCOA3Q9Y6Q9 1424 aa20.97■□□□□ 0.95
LINC00339-211ENST00000641009 C14orf37Q86TY3 774 aa20.96■□□□□ 0.95
LINC00339-211ENST00000641009 SLAIN2Q9P270 581 aa20.96■□□□□ 0.95
LINC00339-211ENST00000641009 AMOTL2Q9Y2J4 779 aa20.95■□□□□ 0.94
LINC00339-211ENST00000641009 SLC4A1APQ9BWU0 796 aaKnown RBP20.94■□□□□ 0.94
LINC00339-211ENST00000641009 PPLO60437 1756 aa20.92■□□□□ 0.94
LINC00339-211ENST00000641009 SETD1AO15047 1707 aaKnown RBP20.92■□□□□ 0.94
LINC00339-211ENST00000641009 METP08581 1390 aa20.91■□□□□ 0.94
LINC00339-211ENST00000641009 C19orf44Q9H6X5 657 aa20.89■□□□□ 0.94
LINC00339-211ENST00000641009 COL16A1Q07092 1604 aaPredicted RBP20.89■□□□□ 0.93
LINC00339-211ENST00000641009 FOXD1Q16676 465 aa20.88■□□□□ 0.93
LINC00339-211ENST00000641009 ATF3P18847 181 aa20.88■□□□□ 0.93
LINC00339-211ENST00000641009 CADPS2Q86UW7 1296 aa20.88■□□□□ 0.93
LINC00339-211ENST00000641009 NALCNQ8IZF0 1738 aa20.87■□□□□ 0.93
LINC00339-211ENST00000641009 AHDC1Q5TGY3 1603 aaPredicted RBP20.84■□□□□ 0.93
LINC00339-211ENST00000641009 RGS17Q9UGC6 210 aaPredicted RBP20.84■□□□□ 0.93
LINC00339-211ENST00000641009 DCCP43146 1447 aa20.83■□□□□ 0.92
LINC00339-211ENST00000641009 VGFO15240 615 aaPredicted RBP20.82■□□□□ 0.92
LINC00339-211ENST00000641009 IFT172Q9UG01 1749 aa20.82■□□□□ 0.92
LINC00339-211ENST00000641009 JCADQ9P266 1359 aa20.81■□□□□ 0.92
LINC00339-211ENST00000641009 RPGRIP1LQ68CZ1 1315 aa20.8■□□□□ 0.92
LINC00339-211ENST00000641009 MPHOSPH9Q99550 1183 aa20.8■□□□□ 0.92
LINC00339-211ENST00000641009 CCDC144AA2RUR9 1427 aa20.8■□□□□ 0.92
LINC00339-211ENST00000641009 SHPRHQ149N8 1683 aa20.79■□□□□ 0.92
LINC00339-211ENST00000641009 ADGRL3Q9HAR2 1447 aa20.79■□□□□ 0.92
LINC00339-211ENST00000641009 ASXL1Q8IXJ9 1541 aa20.78■□□□□ 0.92
LINC00339-211ENST00000641009 MST1RQ04912 1400 aa20.78■□□□□ 0.92
LINC00339-211ENST00000641009 NHSL1Q5SYE7 1610 aa20.78■□□□□ 0.92
LINC00339-211ENST00000641009 BRINP3Q76B58 766 aa20.78■□□□□ 0.92
LINC00339-211ENST00000641009 PTCH1Q13635 1447 aa20.76■□□□□ 0.91
LINC00339-211ENST00000641009 SPATA31E1Q6ZUB1 1445 aa20.75■□□□□ 0.91
LINC00339-211ENST00000641009 RGL3Q3MIN7 710 aa20.75■□□□□ 0.91
LINC00339-211ENST00000641009 ROBO2Q9HCK4 1378 aa20.74■□□□□ 0.91
LINC00339-211ENST00000641009 SETD5Q9C0A6 1442 aa20.74■□□□□ 0.91
LINC00339-211ENST00000641009 LRP6O75581 1613 aa20.73■□□□□ 0.91
LINC00339-211ENST00000641009 POTEAQ6S8J7 498 aa20.72■□□□□ 0.91
LINC00339-211ENST00000641009 ADGRF5Q8IZF2 1346 aa20.72■□□□□ 0.91
LINC00339-211ENST00000641009 PRAG1Q86YV5 1406 aa20.71■□□□□ 0.91
LINC00339-211ENST00000641009 SPATA31A6Q5VVP1 1343 aa20.69■□□□□ 0.9
LINC00339-211ENST00000641009 RAB3GAP2Q9H2M9 1393 aa20.69■□□□□ 0.9
LINC00339-211ENST00000641009 DDX17Q92841 729 aaKnown RBP20.68■□□□□ 0.9
LINC00339-211ENST00000641009 C1orf167Q5SNV9 1468 aa20.68■□□□□ 0.9
LINC00339-211ENST00000641009 ANKRD30BQ9BXX2 1392 aa20.67■□□□□ 0.9
LINC00339-211ENST00000641009 KNDC1Q76NI1 1749 aa20.67■□□□□ 0.9
LINC00339-211ENST00000641009 ACIN1Q9UKV3 1341 aaKnown RBP20.65■□□□□ 0.9
LINC00339-211ENST00000641009 LAMC1P11047 1609 aa20.65■□□□□ 0.9
LINC00339-211ENST00000641009 PIK3C2GO75747 1445 aa20.64■□□□□ 0.9
LINC00339-211ENST00000641009 MEX3CQ5U5Q3 659 aaKnown RBP20.64■□□□□ 0.89
LINC00339-211ENST00000641009 NUTM2BA6NNL0 878 aaPredicted RBP20.62■□□□□ 0.89
LINC00339-211ENST00000641009 NUTM2EB1AL46 878 aaPredicted RBP20.62■□□□□ 0.89
LINC00339-211ENST00000641009 NUTM2AQ8IVF1 878 aaPredicted RBP20.62■□□□□ 0.89
LINC00339-211ENST00000641009 STK26Q9P289 416 aa20.62■□□□□ 0.89
LINC00339-211ENST00000641009 CDC42BPGQ6DT37 1551 aa20.62■□□□□ 0.89
LINC00339-211ENST00000641009 TMEM132EQ6IEE7 984 aa20.61■□□□□ 0.89
LINC00339-211ENST00000641009 LRRC59Q96AG4 307 aaKnown RBP20.61■□□□□ 0.89
LINC00339-211ENST00000641009 ORAI2Q96SN7 254 aa20.61■□□□□ 0.89
LINC00339-211ENST00000641009 TECPR2O15040 1411 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms