RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 SCAF11Q99590 1463 aaKnown RBP19.28■□□□□ 0.68
GTF3A-209ENST00000640289 NEURL4Q96JN8 1562 aa19.28■□□□□ 0.68
GTF3A-209ENST00000640289 KIF1BO60333 1816 aa19.28■□□□□ 0.68
GTF3A-209ENST00000640289 SIN3AQ96ST3 1273 aa19.27■□□□□ 0.68
GTF3A-209ENST00000640289 SENP3Q9H4L4 574 aaPredicted RBP19.27■□□□□ 0.68
GTF3A-209ENST00000640289 NPHP4O75161 1426 aaPredicted RBP19.25■□□□□ 0.67
GTF3A-209ENST00000640289 PPP1R15AO75807 674 aaPredicted RBP19.25■□□□□ 0.67
GTF3A-209ENST00000640289 NEXMIFQ5QGS0 1516 aa19.25■□□□□ 0.67
GTF3A-209ENST00000640289 MED14O60244 1454 aa19.24■□□□□ 0.67
GTF3A-209ENST00000640289 HDGFP51858 240 aaKnown RBP19.24■□□□□ 0.67
GTF3A-209ENST00000640289 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.24■□□□□ 0.67
GTF3A-209ENST00000640289 POLR1AO95602 1720 aaPredicted RBP19.24■□□□□ 0.67
GTF3A-209ENST00000640289 RPGRIP1LQ68CZ1 1315 aa19.23■□□□□ 0.67
GTF3A-209ENST00000640289 NEUROD1Q13562 356 aa19.22■□□□□ 0.67
GTF3A-209ENST00000640289 DMRT2Q9Y5R5 561 aa19.22■□□□□ 0.67
GTF3A-209ENST00000640289 PLEKHG1Q9ULL1 1385 aa19.2■□□□□ 0.66
GTF3A-209ENST00000640289 BCANQ96GW7 911 aa19.2■□□□□ 0.66
GTF3A-209ENST00000640289 IQGAP1P46940 1657 aa19.18■□□□□ 0.66
GTF3A-209ENST00000640289 VGFO15240 615 aaPredicted RBP19.17■□□□□ 0.66
GTF3A-209ENST00000640289 SLC26A8Q96RN1 970 aa19.17■□□□□ 0.66
GTF3A-209ENST00000640289 ADGRF5Q8IZF2 1346 aa19.17■□□□□ 0.66
GTF3A-209ENST00000640289 CCER1Q8TC90 406 aaPredicted RBP19.16■□□□□ 0.66
GTF3A-209ENST00000640289 PPLO60437 1756 aa19.16■□□□□ 0.66
GTF3A-209ENST00000640289 DCAF11Q8TEB1 546 aa19.15■□□□□ 0.66
GTF3A-209ENST00000640289 KDM2AQ9Y2K7 1162 aa19.15■□□□□ 0.66
GTF3A-209ENST00000640289 ADAMTS13Q76LX8 1427 aa19.14■□□□□ 0.65
GTF3A-209ENST00000640289 IFT172Q9UG01 1749 aa19.14■□□□□ 0.65
GTF3A-209ENST00000640289 ZNF335Q9H4Z2 1342 aaPredicted RBP19.12■□□□□ 0.65
GTF3A-209ENST00000640289 L3MBTL2Q969R5 705 aa19.12■□□□□ 0.65
GTF3A-209ENST00000640289 NRXN3Q9Y4C0 1643 aa19.11■□□□□ 0.65
GTF3A-209ENST00000640289 MYOM2P54296 1465 aa19.11■□□□□ 0.65
GTF3A-209ENST00000640289 SETBP1Q9Y6X0 1596 aa19.1■□□□□ 0.65
GTF3A-209ENST00000640289 CLSPNQ9HAW4 1339 aa19.1■□□□□ 0.65
GTF3A-209ENST00000640289 TBX22Q9Y458 520 aa19.1■□□□□ 0.65
GTF3A-209ENST00000640289 NRXN1Q9ULB1 1477 aa19.09■□□□□ 0.65
GTF3A-209ENST00000640289 PIK3C2GO75747 1445 aa19.08■□□□□ 0.65
GTF3A-209ENST00000640289 TONSLQ96HA7 1378 aa19.06■□□□□ 0.64
GTF3A-209ENST00000640289 DIP2AQ14689 1571 aa19.06■□□□□ 0.64
GTF3A-209ENST00000640289 METP08581 1390 aa19.06■□□□□ 0.64
GTF3A-209ENST00000640289 ALKQ9UM73 1620 aa19.05■□□□□ 0.64
GTF3A-209ENST00000640289 CFAP70Q5T0N1 1121 aa19.04■□□□□ 0.64
GTF3A-209ENST00000640289 STAC3Q96MF2 364 aa19.04■□□□□ 0.64
GTF3A-209ENST00000640289 PTPRUQ92729 1446 aa19.03■□□□□ 0.64
GTF3A-209ENST00000640289 LTBP4Q8N2S1 1624 aa19.03■□□□□ 0.64
GTF3A-209ENST00000640289 KCNA6P17658 529 aa19.02■□□□□ 0.64
GTF3A-209ENST00000640289 C14orf93Q9H972 538 aaKnown RBP19.02■□□□□ 0.64
GTF3A-209ENST00000640289 SETD1AO15047 1707 aaKnown RBP19.01■□□□□ 0.63
GTF3A-209ENST00000640289 PRAG1Q86YV5 1406 aa19■□□□□ 0.63
GTF3A-209ENST00000640289 TMEM132EQ6IEE7 984 aa19■□□□□ 0.63
GTF3A-209ENST00000640289 AMOTL2Q9Y2J4 779 aa19■□□□□ 0.63
GTF3A-209ENST00000640289 PIK3R4Q99570 1358 aa19■□□□□ 0.63
GTF3A-209ENST00000640289 STRCP1A6NGW2 1772 aa19■□□□□ 0.63
GTF3A-209ENST00000640289 ASXL1Q8IXJ9 1541 aa19■□□□□ 0.63
GTF3A-209ENST00000640289 NWD1Q149M9 1564 aa18.98■□□□□ 0.63
GTF3A-209ENST00000640289 NBPF8Q3BBV2 869 aa18.97■□□□□ 0.63
GTF3A-209ENST00000640289 CPS1P31327 1500 aa18.96■□□□□ 0.63
GTF3A-209ENST00000640289 CHD2O14647 1828 aaKnown RBP18.95■□□□□ 0.62
GTF3A-209ENST00000640289 RBM33Q96EV2 1170 aaKnown RBP18.95■□□□□ 0.62
GTF3A-209ENST00000640289 LRRC7Q96NW7 1537 aa18.95■□□□□ 0.62
GTF3A-209ENST00000640289 LAMC1P11047 1609 aa18.94■□□□□ 0.62
GTF3A-209ENST00000640289 NBPF1Q3BBV0 1214 aa18.94■□□□□ 0.62
GTF3A-209ENST00000640289 PROSER2Q86WR7 435 aaPredicted RBP18.94■□□□□ 0.62
GTF3A-209ENST00000640289 STK26Q9P289 416 aa18.94■□□□□ 0.62
GTF3A-209ENST00000640289 ADGRB1O14514 1584 aa18.93■□□□□ 0.62
GTF3A-209ENST00000640289 NKTRP30414 1462 aaKnown RBP18.93■□□□□ 0.62
GTF3A-209ENST00000640289 CERKQ8TCT0 537 aa18.93■□□□□ 0.62
GTF3A-209ENST00000640289 TIMELESSQ9UNS1 1208 aa18.93■□□□□ 0.62
GTF3A-209ENST00000640289 XRN1Q8IZH2 1706 aaKnown RBP18.93■□□□□ 0.62
GTF3A-209ENST00000640289 YTHDC2Q9H6S0 1430 aaKnown RBP18.92■□□□□ 0.62
GTF3A-209ENST00000640289 LRPPRCP42704 1394 aaKnown RBP18.92■□□□□ 0.62
GTF3A-209ENST00000640289 TMEM94Q12767 1356 aa18.92■□□□□ 0.62
GTF3A-209ENST00000640289 ROBO2Q9HCK4 1378 aa18.91■□□□□ 0.62
GTF3A-209ENST00000640289 ABCC11Q96J66 1382 aa18.89■□□□□ 0.61
GTF3A-209ENST00000640289 TRAK1Q9UPV9 953 aa18.88■□□□□ 0.61
GTF3A-209ENST00000640289 TECPR2O15040 1411 aa18.88■□□□□ 0.61
GTF3A-209ENST00000640289 PTCH1Q13635 1447 aa18.88■□□□□ 0.61
GTF3A-209ENST00000640289 TRPM1Q7Z4N2 1603 aa18.87■□□□□ 0.61
GTF3A-209ENST00000640289 KIAA1210Q9ULL0 1709 aa18.87■□□□□ 0.61
GTF3A-209ENST00000640289 ROCK2O75116 1388 aaKnown RBP18.86■□□□□ 0.61
GTF3A-209ENST00000640289 WAPLQ7Z5K2 1190 aa18.86■□□□□ 0.61
GTF3A-209ENST00000640289 PLEKHH1Q9ULM0 1364 aa18.85■□□□□ 0.61
GTF3A-209ENST00000640289 RALGAPBQ86X10 1494 aa18.84■□□□□ 0.61
GTF3A-209ENST00000640289 KNDC1Q76NI1 1749 aa18.83■□□□□ 0.61
GTF3A-209ENST00000640289 C14orf37Q86TY3 774 aa18.83■□□□□ 0.6
GTF3A-209ENST00000640289 XIRP1Q702N8 1843 aaKnown RBP18.83■□□□□ 0.6
GTF3A-209ENST00000640289 SAFB2Q14151 953 aaKnown RBP eCLIP18.82■□□□□ 0.6
GTF3A-209ENST00000640289 PRAM1Q96QH2 718 aa18.82■□□□□ 0.6
GTF3A-209ENST00000640289 DLC1Q96QB1 1528 aa18.82■□□□□ 0.6
GTF3A-209ENST00000640289 IQSEC2Q5JU85 1478 aa18.82■□□□□ 0.6
GTF3A-209ENST00000640289 NCOA3Q9Y6Q9 1424 aa18.82■□□□□ 0.6
GTF3A-209ENST00000640289 GPRASP1Q5JY77 1395 aa18.81■□□□□ 0.6
GTF3A-209ENST00000640289 SIRT1Q96EB6 747 aa18.81■□□□□ 0.6
GTF3A-209ENST00000640289 FAM135BQ49AJ0 1406 aa18.81■□□□□ 0.6
GTF3A-209ENST00000640289 CARD11Q9BXL7 1154 aa18.8■□□□□ 0.6
GTF3A-209ENST00000640289 POGKQ9P215 609 aa18.79■□□□□ 0.6
GTF3A-209ENST00000640289 MSH6P52701 1360 aa18.79■□□□□ 0.6
GTF3A-209ENST00000640289 ADGRL3Q9HAR2 1447 aa18.78■□□□□ 0.6
GTF3A-209ENST00000640289 C19orf44Q9H6X5 657 aa18.78■□□□□ 0.6
GTF3A-209ENST00000640289 UBAP1LF5GYI3 381 aa18.76■□□□□ 0.59
GTF3A-209ENST00000640289 NALCNQ8IZF0 1738 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms