RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 NWD1Q149M9 1564 aa23.32■■□□□ 1.32
SYNE2-228ENST00000639659 NKTRP30414 1462 aaKnown RBP23.32■■□□□ 1.32
SYNE2-228ENST00000639659 MSH6P52701 1360 aa23.32■■□□□ 1.32
SYNE2-228ENST00000639659 GCC2Q8IWJ2 1684 aa23.32■■□□□ 1.32
SYNE2-228ENST00000639659 SLC52A1Q9NWF4 448 aa23.31■■□□□ 1.32
SYNE2-228ENST00000639659 ADGRL2O95490 1459 aa23.3■■□□□ 1.32
SYNE2-228ENST00000639659 CHGAP10645 457 aaKnown RBP23.3■■□□□ 1.32
SYNE2-228ENST00000639659 ANKRD50Q9ULJ7 1429 aa23.29■■□□□ 1.32
SYNE2-228ENST00000639659 POTEAQ6S8J7 498 aa23.28■■□□□ 1.32
SYNE2-228ENST00000639659 PHLPP1O60346 1717 aa23.28■■□□□ 1.32
SYNE2-228ENST00000639659 RIMS2Q9UQ26 1411 aa23.27■■□□□ 1.32
SYNE2-228ENST00000639659 RPRD2Q5VT52 1461 aaKnown RBP23.26■■□□□ 1.31
SYNE2-228ENST00000639659 C14orf37Q86TY3 774 aa23.26■■□□□ 1.31
SYNE2-228ENST00000639659 NUTM2DQ5VT03 806 aaPredicted RBP23.24■■□□□ 1.31
SYNE2-228ENST00000639659 PLEKHG1Q9ULL1 1385 aa23.24■■□□□ 1.31
SYNE2-228ENST00000639659 ZFYVE9O95405 1425 aa23.24■■□□□ 1.31
SYNE2-228ENST00000639659 SLAIN2Q9P270 581 aa23.23■■□□□ 1.31
SYNE2-228ENST00000639659 CHD2O14647 1828 aaKnown RBP23.22■■□□□ 1.31
SYNE2-228ENST00000639659 TMEM131LA2VDJ0 1609 aa23.22■■□□□ 1.31
SYNE2-228ENST00000639659 HDGFP51858 240 aaKnown RBP23.21■■□□□ 1.31
SYNE2-228ENST00000639659 SETD1AO15047 1707 aaKnown RBP23.2■■□□□ 1.3
SYNE2-228ENST00000639659 JCADQ9P266 1359 aa23.18■■□□□ 1.3
SYNE2-228ENST00000639659 UNC13BO14795 1591 aa23.18■■□□□ 1.3
SYNE2-228ENST00000639659 E9PCH4 1651 aa23.16■■□□□ 1.3
SYNE2-228ENST00000639659 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.15■■□□□ 1.3
SYNE2-228ENST00000639659 MEX3CQ5U5Q3 659 aaKnown RBP23.14■■□□□ 1.29
SYNE2-228ENST00000639659 COL16A1Q07092 1604 aaPredicted RBP23.14■■□□□ 1.29
SYNE2-228ENST00000639659 TBX22Q9Y458 520 aa23.13■■□□□ 1.29
SYNE2-228ENST00000639659 ITGAEP38570 1179 aa23.12■■□□□ 1.29
SYNE2-228ENST00000639659 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.11■■□□□ 1.29
SYNE2-228ENST00000639659 ADAMTS13Q76LX8 1427 aa23.1■■□□□ 1.29
SYNE2-228ENST00000639659 ATF3P18847 181 aa23.1■■□□□ 1.29
SYNE2-228ENST00000639659 DIP2AQ14689 1571 aa23.1■■□□□ 1.29
SYNE2-228ENST00000639659 IQGAP3Q86VI3 1631 aa23.09■■□□□ 1.29
SYNE2-228ENST00000639659 LRP6O75581 1613 aa23.08■■□□□ 1.29
SYNE2-228ENST00000639659 CADPS2Q86UW7 1296 aa23.07■■□□□ 1.28
SYNE2-228ENST00000639659 TRPM2O94759 1503 aa23.07■■□□□ 1.28
SYNE2-228ENST00000639659 NUP155O75694 1391 aa23.06■■□□□ 1.28
SYNE2-228ENST00000639659 NCOA3Q9Y6Q9 1424 aa23.06■■□□□ 1.28
SYNE2-228ENST00000639659 TRIM52Q96A61 297 aa23.05■■□□□ 1.28
SYNE2-228ENST00000639659 C19orf44Q9H6X5 657 aa23.05■■□□□ 1.28
SYNE2-228ENST00000639659 AMOTL2Q9Y2J4 779 aa23.04■■□□□ 1.28
SYNE2-228ENST00000639659 SPATA31A6Q5VVP1 1343 aa23.04■■□□□ 1.28
SYNE2-228ENST00000639659 AHDC1Q5TGY3 1603 aaPredicted RBP23.04■■□□□ 1.28
SYNE2-228ENST00000639659 NUTM2BA6NNL0 878 aaPredicted RBP23.03■■□□□ 1.28
SYNE2-228ENST00000639659 NUTM2EB1AL46 878 aaPredicted RBP23.03■■□□□ 1.28
SYNE2-228ENST00000639659 NUTM2AQ8IVF1 878 aaPredicted RBP23.03■■□□□ 1.28
SYNE2-228ENST00000639659 ROCK1Q13464 1354 aa23.02■■□□□ 1.28
SYNE2-228ENST00000639659 PIK3R4Q99570 1358 aa23.02■■□□□ 1.28
SYNE2-228ENST00000639659 PTPRUQ92729 1446 aa23.01■■□□□ 1.27
SYNE2-228ENST00000639659 SHPRHQ149N8 1683 aa23.01■■□□□ 1.27
SYNE2-228ENST00000639659 ZNF326Q5BKZ1 582 aaKnown RBP23.01■■□□□ 1.27
SYNE2-228ENST00000639659 PPARGC1BQ86YN6 1023 aaKnown RBP23■■□□□ 1.27
SYNE2-228ENST00000639659 ZNF772Q68DY9 489 aaPredicted RBP22.99■■□□□ 1.27
SYNE2-228ENST00000639659 BRINP3Q76B58 766 aa22.98■■□□□ 1.27
SYNE2-228ENST00000639659 SPHKAPQ2M3C7 1700 aa22.96■■□□□ 1.27
SYNE2-228ENST00000639659 NRXN3Q9Y4C0 1643 aa22.95■■□□□ 1.26
SYNE2-228ENST00000639659 XRN1Q8IZH2 1706 aaKnown RBP22.94■■□□□ 1.26
SYNE2-228ENST00000639659 ASXL1Q8IXJ9 1541 aa22.94■■□□□ 1.26
SYNE2-228ENST00000639659 SETBP1Q9Y6X0 1596 aa22.92■■□□□ 1.26
SYNE2-228ENST00000639659 DCCP43146 1447 aa22.91■■□□□ 1.26
SYNE2-228ENST00000639659 RXRBP28702 533 aa22.9■■□□□ 1.26
SYNE2-228ENST00000639659 MST1RQ04912 1400 aa22.9■■□□□ 1.26
SYNE2-228ENST00000639659 METP08581 1390 aa22.89■■□□□ 1.26
SYNE2-228ENST00000639659 AFF2P51816 1311 aa22.89■■□□□ 1.26
SYNE2-228ENST00000639659 UPF1Q92900 1129 aaKnown RBP eCLIP22.89■■□□□ 1.25
SYNE2-228ENST00000639659 DDX17Q92841 729 aaKnown RBP22.88■■□□□ 1.25
SYNE2-228ENST00000639659 NHSL1Q5SYE7 1610 aa22.87■■□□□ 1.25
SYNE2-228ENST00000639659 CLTCL1P53675 1640 aa22.86■■□□□ 1.25
SYNE2-228ENST00000639659 NALCNQ8IZF0 1738 aa22.85■■□□□ 1.25
SYNE2-228ENST00000639659 C8orf37Q96NL8 207 aa22.85■■□□□ 1.25
SYNE2-228ENST00000639659 ADGRL3Q9HAR2 1447 aa22.84■■□□□ 1.25
SYNE2-228ENST00000639659 SETD5Q9C0A6 1442 aa22.83■■□□□ 1.25
SYNE2-228ENST00000639659 NEXMIFQ5QGS0 1516 aa22.83■■□□□ 1.25
SYNE2-228ENST00000639659 LRRC59Q96AG4 307 aaKnown RBP22.83■■□□□ 1.25
SYNE2-228ENST00000639659 KIF1BO60333 1816 aa22.81■■□□□ 1.24
SYNE2-228ENST00000639659 PNPLA6Q8IY17 1366 aa22.79■■□□□ 1.24
SYNE2-228ENST00000639659 ADAMTS2O95450 1211 aa22.79■■□□□ 1.24
SYNE2-228ENST00000639659 CDK12Q9NYV4 1490 aaPredicted RBP22.77■■□□□ 1.24
SYNE2-228ENST00000639659 QTRT2Q9H974 415 aaKnown RBP22.76■■□□□ 1.23
SYNE2-228ENST00000639659 RGS12O14924 1447 aa22.75■■□□□ 1.23
SYNE2-228ENST00000639659 C1orf167Q5SNV9 1468 aa22.75■■□□□ 1.23
SYNE2-228ENST00000639659 NGLY1Q96IV0 654 aa22.74■■□□□ 1.23
SYNE2-228ENST00000639659 RBM6P78332 1123 aaKnown RBP22.72■■□□□ 1.23
SYNE2-228ENST00000639659 ORAI2Q96SN7 254 aa22.71■■□□□ 1.23
SYNE2-228ENST00000639659 ROBO2Q9HCK4 1378 aa22.71■■□□□ 1.23
SYNE2-228ENST00000639659 NAIPQ13075 1403 aa22.7■■□□□ 1.22
SYNE2-228ENST00000639659 PTCH1Q13635 1447 aa22.7■■□□□ 1.22
SYNE2-228ENST00000639659 VGFO15240 615 aaPredicted RBP22.69■■□□□ 1.22
SYNE2-228ENST00000639659 USP21Q9UK80 565 aa22.65■■□□□ 1.22
SYNE2-228ENST00000639659 SLC4A1APQ9BWU0 796 aaKnown RBP22.64■■□□□ 1.21
SYNE2-228ENST00000639659 RRBP1Q9P2E9 1410 aaKnown RBP22.64■■□□□ 1.21
SYNE2-228ENST00000639659 PPLO60437 1756 aa22.63■■□□□ 1.21
SYNE2-228ENST00000639659 SOS2Q07890 1332 aaPredicted RBP22.63■■□□□ 1.21
SYNE2-228ENST00000639659 LAMC1P11047 1609 aa22.63■■□□□ 1.21
SYNE2-228ENST00000639659 HFM1A2PYH4 1435 aa22.61■■□□□ 1.21
SYNE2-228ENST00000639659 ESCO1Q5FWF5 840 aa22.61■■□□□ 1.21
SYNE2-228ENST00000639659 XPCQ01831 940 aaPredicted RBP22.6■■□□□ 1.21
SYNE2-228ENST00000639659 TRPC5Q9UL62 973 aaPredicted RBP22.6■■□□□ 1.21
SYNE2-228ENST00000639659 ATAD2Q6PL18 1390 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms