RNA–Protein interactions for RNA: ENST00000638141.1

CAPN3-221, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 2,358 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-221ENST00000638141 MAPK8IP3Q9UPT6 1336 aa15.33■□□□□ 0.04
CAPN3-221ENST00000638141 OFD1O75665 1012 aa15.33■□□□□ 0.04
CAPN3-221ENST00000638141 FOXD1Q16676 465 aa15.33■□□□□ 0.04
CAPN3-221ENST00000638141 NUP153P49790 1475 aaKnown RBP15.32■□□□□ 0.04
CAPN3-221ENST00000638141 UTP14CQ5TAP6 766 aaKnown RBP15.32■□□□□ 0.04
CAPN3-221ENST00000638141 NPM1P06748 294 aaKnown RBP eCLIP15.32■□□□□ 0.04
CAPN3-221ENST00000638141 TRAK2O60296 914 aa15.31■□□□□ 0.04
CAPN3-221ENST00000638141 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.31■□□□□ 0.04
CAPN3-221ENST00000638141 SLKQ9H2G2 1235 aaPredicted RBP15.31■□□□□ 0.04
CAPN3-221ENST00000638141 KCNA4P22459 653 aa15.31■□□□□ 0.04
CAPN3-221ENST00000638141 C20orf194Q5TEA3 1177 aa15.31■□□□□ 0.04
CAPN3-221ENST00000638141 DDX11L8A8MPP1 907 aa15.3■□□□□ 0.04
CAPN3-221ENST00000638141 ADGRL2O95490 1459 aa15.3■□□□□ 0.04
CAPN3-221ENST00000638141 LAMC1P11047 1609 aa15.29■□□□□ 0.04
CAPN3-221ENST00000638141 ZCCHC11Q5TAX3 1644 aaKnown RBP15.29■□□□□ 0.04
CAPN3-221ENST00000638141 NCLP19338 710 aaKnown RBP15.29■□□□□ 0.04
CAPN3-221ENST00000638141 RIPK4P57078 832 aa15.29■□□□□ 0.04
CAPN3-221ENST00000638141 ATP10BO94823 1461 aa15.29■□□□□ 0.04
CAPN3-221ENST00000638141 POLR3GLQ9BT43 218 aa15.28■□□□□ 0.04
CAPN3-221ENST00000638141 SENP3-EIF4A1A0A087X0R7 540 aa15.28■□□□□ 0.04
CAPN3-221ENST00000638141 CHMP5Q9NZZ3 219 aa15.28■□□□□ 0.04
CAPN3-221ENST00000638141 TULP1O00294 542 aaPredicted RBP15.27■□□□□ 0.03
CAPN3-221ENST00000638141 TBC1D32Q96NH3 1257 aa15.27■□□□□ 0.03
CAPN3-221ENST00000638141 PPP1R9BQ96SB3 815 aa15.27■□□□□ 0.03
CAPN3-221ENST00000638141 NINLQ9Y2I6 1382 aa15.27■□□□□ 0.03
CAPN3-221ENST00000638141 CDK13Q14004 1512 aaKnown RBP15.26■□□□□ 0.03
CAPN3-221ENST00000638141 ZSCAN30Q86W11 494 aa15.26■□□□□ 0.03
CAPN3-221ENST00000638141 TBC1D2Q9BYX2 928 aa15.26■□□□□ 0.03
CAPN3-221ENST00000638141 CCDC173Q0VFZ6 552 aa15.26■□□□□ 0.03
CAPN3-221ENST00000638141 CARD11Q9BXL7 1154 aa15.25■□□□□ 0.03
CAPN3-221ENST00000638141 KDM5DQ9BY66 1539 aa15.25■□□□□ 0.03
CAPN3-221ENST00000638141 CROCC2H7BZ55 1655 aa15.25■□□□□ 0.03
CAPN3-221ENST00000638141 PTMSP20962 102 aa15.24■□□□□ 0.03
CAPN3-221ENST00000638141 UPF2Q9HAU5 1272 aaKnown RBP15.24■□□□□ 0.03
CAPN3-221ENST00000638141 HS1BP3Q53T59 392 aa15.23■□□□□ 0.03
CAPN3-221ENST00000638141 ASXL2Q76L83 1435 aa15.22■□□□□ 0.03
CAPN3-221ENST00000638141 GZF1Q9H116 711 aaPredicted RBP15.22■□□□□ 0.03
CAPN3-221ENST00000638141 COL17A1Q9UMD9 1497 aaPredicted RBP15.22■□□□□ 0.03
CAPN3-221ENST00000638141 DMTNQ08495 405 aa15.21■□□□□ 0.03
CAPN3-221ENST00000638141 DUSP27Q5VZP5 1158 aa15.21■□□□□ 0.03
CAPN3-221ENST00000638141 ITSN2Q9NZM3 1697 aa15.21■□□□□ 0.03
CAPN3-221ENST00000638141 NCOA3Q9Y6Q9 1424 aa15.21■□□□□ 0.03
CAPN3-221ENST00000638141 PER1O15534 1290 aaPredicted RBP15.21■□□□□ 0.03
CAPN3-221ENST00000638141 SEC24BO95487 1268 aa15.21■□□□□ 0.03
CAPN3-221ENST00000638141 DYNC1I1O14576 645 aa15.2■□□□□ 0.02
CAPN3-221ENST00000638141 CNGB1Q14028 1251 aaPredicted RBP15.2■□□□□ 0.02
CAPN3-221ENST00000638141 SKOR2Q2VWA4 1001 aaPredicted RBP15.2■□□□□ 0.02
CAPN3-221ENST00000638141 ZNF521Q96K83 1311 aa15.2■□□□□ 0.02
CAPN3-221ENST00000638141 ANKRD30AQ9BXX3 1397 aa15.2■□□□□ 0.02
CAPN3-221ENST00000638141 IBTKQ9P2D0 1353 aaPredicted RBP15.2■□□□□ 0.02
CAPN3-221ENST00000638141 TRPM1Q7Z4N2 1603 aa15.2■□□□□ 0.02
CAPN3-221ENST00000638141 CAMSAP2Q08AD1 1489 aa15.19■□□□□ 0.02
CAPN3-221ENST00000638141 ST20-MTHFSA0A0A6YYL1 179 aa15.19■□□□□ 0.02
CAPN3-221ENST00000638141 PLXNC1O60486 1568 aa15.18■□□□□ 0.02
CAPN3-221ENST00000638141 PLEKHD1A6NEE1 506 aa15.18■□□□□ 0.02
CAPN3-221ENST00000638141 CGNL1Q0VF96 1302 aa15.18■□□□□ 0.02
CAPN3-221ENST00000638141 GPRASP1Q5JY77 1395 aa15.17■□□□□ 0.02
CAPN3-221ENST00000638141 ZNF500O60304 480 aaPredicted RBP15.17■□□□□ 0.02
CAPN3-221ENST00000638141 WDR7Q9Y4E6 1490 aa15.17■□□□□ 0.02
CAPN3-221ENST00000638141 TRHP20396 242 aaPredicted RBP15.17■□□□□ 0.02
CAPN3-221ENST00000638141 RTEL1-TNFRSF6BF6WH68 1400 aa15.16■□□□□ 0.02
CAPN3-221ENST00000638141 PDIA4P13667 645 aaKnown RBP15.16■□□□□ 0.02
CAPN3-221ENST00000638141 MSNP26038 577 aaKnown RBP15.16■□□□□ 0.02
CAPN3-221ENST00000638141 NGEFQ8N5V2 710 aa15.16■□□□□ 0.02
CAPN3-221ENST00000638141 ZNF692Q9BU19 519 aaPredicted RBP15.16■□□□□ 0.02
CAPN3-221ENST00000638141 GOLGA2Q08379 1002 aa15.16■□□□□ 0.02
CAPN3-221ENST00000638141 TRMT2AQ8IZ69 625 aaKnown RBP15.16■□□□□ 0.02
CAPN3-221ENST00000638141 KIF20AO95235 890 aa15.15■□□□□ 0.02
CAPN3-221ENST00000638141 DDIT3P35638 169 aa15.15■□□□□ 0.02
CAPN3-221ENST00000638141 HOMEZQ8IX15 550 aa15.15■□□□□ 0.02
CAPN3-221ENST00000638141 CIZ1Q9ULV3 898 aaPredicted RBP15.15■□□□□ 0.02
CAPN3-221ENST00000638141 NKTRP30414 1462 aaKnown RBP15.15■□□□□ 0.02
CAPN3-221ENST00000638141 ZNF326Q5BKZ1 582 aaKnown RBP15.14■□□□□ 0.01
CAPN3-221ENST00000638141 PRDM15P57071 1507 aaPredicted RBP15.14■□□□□ 0.01
CAPN3-221ENST00000638141 FAM69CQ0P6D2 419 aa15.14■□□□□ 0.01
CAPN3-221ENST00000638141 PDE3AQ14432 1141 aa15.14■□□□□ 0.01
CAPN3-221ENST00000638141 FAM13BQ9NYF5 915 aa15.14■□□□□ 0.01
CAPN3-221ENST00000638141 PKD2Q13563 968 aa15.13■□□□□ 0.01
CAPN3-221ENST00000638141 GAS2L3Q86XJ1 694 aa15.13■□□□□ 0.01
CAPN3-221ENST00000638141 CCDC94Q9BW85 323 aaPredicted RBP15.13■□□□□ 0.01
CAPN3-221ENST00000638141 GTPBP4Q9BZE4 634 aaKnown RBP15.13■□□□□ 0.01
CAPN3-221ENST00000638141 SHANK2Q9UPX8 1470 aa15.13■□□□□ 0.01
CAPN3-221ENST00000638141 CSPP1Q1MSJ5 1256 aa15.13■□□□□ 0.01
CAPN3-221ENST00000638141 PLEKHH1Q9ULM0 1364 aa15.13■□□□□ 0.01
CAPN3-221ENST00000638141 ABCC10Q5T3U5 1492 aa15.13■□□□□ 0.01
CAPN3-221ENST00000638141 EIF2AK4Q9P2K8 1649 aaKnown RBP15.13■□□□□ 0.01
CAPN3-221ENST00000638141 IGHDP01880 384 aa15.12■□□□□ 0.01
CAPN3-221ENST00000638141 SLFN5Q08AF3 891 aa15.12■□□□□ 0.01
CAPN3-221ENST00000638141 ARHGAP31Q2M1Z3 1444 aa15.12■□□□□ 0.01
CAPN3-221ENST00000638141 DIP2BQ9P265 1576 aa15.12■□□□□ 0.01
CAPN3-221ENST00000638141 ZSCAN20P17040 1043 aaPredicted RBP15.12■□□□□ 0.01
CAPN3-221ENST00000638141 GTF2E1P29083 439 aaPredicted RBP15.12■□□□□ 0.01
CAPN3-221ENST00000638141 ANP32BQ92688 251 aaKnown RBP15.12■□□□□ 0.01
CAPN3-221ENST00000638141 KIF13AQ9H1H9 1805 aa15.11■□□□□ 0.01
CAPN3-221ENST00000638141 MCM5P33992 734 aa15.11■□□□□ 0.01
CAPN3-221ENST00000638141 BBXQ8WY36 941 aaPredicted RBP15.11■□□□□ 0.01
CAPN3-221ENST00000638141 UQCRHLA0A096LP55 91 aa15.11■□□□□ 0.01
CAPN3-221ENST00000638141 UQCRHP07919 91 aa15.11■□□□□ 0.01
CAPN3-221ENST00000638141 NOL7Q9UMY1 257 aaKnown RBP15.11■□□□□ 0.01
CAPN3-221ENST00000638141 PRAG1Q86YV5 1406 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms