RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TMEM131LA2VDJ0 1609 aa25.65■■□□□ 1.7
CLN3-263ENST00000637871 HSPA2P54652 639 aa25.64■■□□□ 1.7
CLN3-263ENST00000637871 NBPF8Q3BBV2 869 aa25.63■■□□□ 1.69
CLN3-263ENST00000637871 KIF1BO60333 1816 aa25.63■■□□□ 1.69
CLN3-263ENST00000637871 HIRIP3Q9BW71 556 aaPredicted RBP25.63■■□□□ 1.69
CLN3-263ENST00000637871 STAG3Q9UJ98 1225 aa25.61■■□□□ 1.69
CLN3-263ENST00000637871 SPATA31E1Q6ZUB1 1445 aa25.6■■□□□ 1.69
CLN3-263ENST00000637871 KDM5AP29375 1690 aaKnown RBP25.57■■□□□ 1.68
CLN3-263ENST00000637871 WASHC2AQ641Q2 1341 aa25.53■■□□□ 1.68
CLN3-263ENST00000637871 GTF3C3Q9Y5Q9 886 aa25.53■■□□□ 1.68
CLN3-263ENST00000637871 RALGAPBQ86X10 1494 aa25.53■■□□□ 1.68
CLN3-263ENST00000637871 RGL3Q3MIN7 710 aa25.52■■□□□ 1.68
CLN3-263ENST00000637871 ZNF326Q5BKZ1 582 aaKnown RBP25.52■■□□□ 1.68
CLN3-263ENST00000637871 CCDC7Q96M83 1385 aa25.51■■□□□ 1.67
CLN3-263ENST00000637871 NUTM2DQ5VT03 806 aaPredicted RBP25.51■■□□□ 1.67
CLN3-263ENST00000637871 THEMISQ8N1K5 641 aaPredicted RBP25.51■■□□□ 1.67
CLN3-263ENST00000637871 TMEM2Q9UHN6 1383 aa25.49■■□□□ 1.67
CLN3-263ENST00000637871 SENP3Q9H4L4 574 aaPredicted RBP25.49■■□□□ 1.67
CLN3-263ENST00000637871 SLIT1O75093 1534 aa25.49■■□□□ 1.67
CLN3-263ENST00000637871 ARHGAP23Q9P227 1491 aa25.48■■□□□ 1.67
CLN3-263ENST00000637871 RIMS2Q9UQ26 1411 aa25.48■■□□□ 1.67
CLN3-263ENST00000637871 NEXMIFQ5QGS0 1516 aa25.47■■□□□ 1.67
CLN3-263ENST00000637871 ZFYVE9O95405 1425 aa25.47■■□□□ 1.67
CLN3-263ENST00000637871 STRCQ7RTU9 1775 aa25.47■■□□□ 1.67
CLN3-263ENST00000637871 POLR1AO95602 1720 aaPredicted RBP25.46■■□□□ 1.67
CLN3-263ENST00000637871 NCKAP5LQ9HCH0 1330 aa25.46■■□□□ 1.67
CLN3-263ENST00000637871 LTKP29376 864 aa25.45■■□□□ 1.67
CLN3-263ENST00000637871 STAC3Q96MF2 364 aa25.45■■□□□ 1.67
CLN3-263ENST00000637871 IFT172Q9UG01 1749 aa25.45■■□□□ 1.66
CLN3-263ENST00000637871 PPLO60437 1756 aa25.45■■□□□ 1.66
CLN3-263ENST00000637871 NEURL4Q96JN8 1562 aa25.44■■□□□ 1.66
CLN3-263ENST00000637871 USP47Q96K76 1375 aa25.43■■□□□ 1.66
CLN3-263ENST00000637871 SCAF11Q99590 1463 aaKnown RBP25.42■■□□□ 1.66
CLN3-263ENST00000637871 TXNDC2Q86VQ3 553 aa25.41■■□□□ 1.66
CLN3-263ENST00000637871 DCAF11Q8TEB1 546 aa25.4■■□□□ 1.66
CLN3-263ENST00000637871 ROCK2O75116 1388 aaKnown RBP25.38■■□□□ 1.65
CLN3-263ENST00000637871 ANKLE2Q86XL3 938 aa25.38■■□□□ 1.65
CLN3-263ENST00000637871 CARD11Q9BXL7 1154 aa25.37■■□□□ 1.65
CLN3-263ENST00000637871 EID1Q9Y6B2 187 aa25.37■■□□□ 1.65
CLN3-263ENST00000637871 KIF7Q2M1P5 1343 aa25.36■■□□□ 1.65
CLN3-263ENST00000637871 PRAG1Q86YV5 1406 aa25.34■■□□□ 1.65
CLN3-263ENST00000637871 KDM2AQ9Y2K7 1162 aa25.34■■□□□ 1.65
CLN3-263ENST00000637871 IQGAP1P46940 1657 aa25.34■■□□□ 1.65
CLN3-263ENST00000637871 C11orf95C9JLR9 678 aaPredicted RBP25.34■■□□□ 1.65
CLN3-263ENST00000637871 RPGRIP1LQ68CZ1 1315 aa25.33■■□□□ 1.65
CLN3-263ENST00000637871 ADGRF5Q8IZF2 1346 aa25.33■■□□□ 1.65
CLN3-263ENST00000637871 NPHP4O75161 1426 aaPredicted RBP25.32■■□□□ 1.64
CLN3-263ENST00000637871 GPRASP1Q5JY77 1395 aa25.32■■□□□ 1.64
CLN3-263ENST00000637871 NRXN3Q9Y4C0 1643 aa25.31■■□□□ 1.64
CLN3-263ENST00000637871 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.31■■□□□ 1.64
CLN3-263ENST00000637871 MED14O60244 1454 aa25.3■■□□□ 1.64
CLN3-263ENST00000637871 LAMC1P11047 1609 aa25.3■■□□□ 1.64
CLN3-263ENST00000637871 BCANQ96GW7 911 aa25.3■■□□□ 1.64
CLN3-263ENST00000637871 MYOM2P54296 1465 aa25.29■■□□□ 1.64
CLN3-263ENST00000637871 PLEKHG1Q9ULL1 1385 aa25.29■■□□□ 1.64
CLN3-263ENST00000637871 HDGFP51858 240 aaKnown RBP25.27■■□□□ 1.64
CLN3-263ENST00000637871 TRPM1Q7Z4N2 1603 aa25.27■■□□□ 1.64
CLN3-263ENST00000637871 VGFO15240 615 aaPredicted RBP25.26■■□□□ 1.63
CLN3-263ENST00000637871 SLC26A8Q96RN1 970 aa25.26■■□□□ 1.63
CLN3-263ENST00000637871 SETBP1Q9Y6X0 1596 aa25.25■■□□□ 1.63
CLN3-263ENST00000637871 PRKRIP1Q9H875 184 aaPredicted RBP25.25■■□□□ 1.63
CLN3-263ENST00000637871 ADAMTS13Q76LX8 1427 aa25.24■■□□□ 1.63
CLN3-263ENST00000637871 NRXN1Q9ULB1 1477 aa25.24■■□□□ 1.63
CLN3-263ENST00000637871 PIK3C2GO75747 1445 aa25.24■■□□□ 1.63
CLN3-263ENST00000637871 SETD1AO15047 1707 aaKnown RBP25.22■■□□□ 1.63
CLN3-263ENST00000637871 ALKQ9UM73 1620 aa25.2■■□□□ 1.63
CLN3-263ENST00000637871 ST20-MTHFSA0A0A6YYL1 179 aa25.17■■□□□ 1.62
CLN3-263ENST00000637871 KTN1Q86UP2 1357 aaKnown RBP25.17■■□□□ 1.62
CLN3-263ENST00000637871 DIP2AQ14689 1571 aa25.17■■□□□ 1.62
CLN3-263ENST00000637871 ASXL1Q8IXJ9 1541 aa25.16■■□□□ 1.62
CLN3-263ENST00000637871 CFAP70Q5T0N1 1121 aa25.16■■□□□ 1.62
CLN3-263ENST00000637871 METP08581 1390 aa25.15■■□□□ 1.62
CLN3-263ENST00000637871 DMRT2Q9Y5R5 561 aa25.14■■□□□ 1.61
CLN3-263ENST00000637871 STRCP1A6NGW2 1772 aa25.13■■□□□ 1.61
CLN3-263ENST00000637871 ZNF335Q9H4Z2 1342 aaPredicted RBP25.12■■□□□ 1.61
CLN3-263ENST00000637871 TMEM132EQ6IEE7 984 aa25.12■■□□□ 1.61
CLN3-263ENST00000637871 TBX22Q9Y458 520 aa25.11■■□□□ 1.61
CLN3-263ENST00000637871 PTPRUQ92729 1446 aa25.1■■□□□ 1.61
CLN3-263ENST00000637871 SLC24A1O60721 1099 aa25.1■■□□□ 1.61
CLN3-263ENST00000637871 C14orf93Q9H972 538 aaKnown RBP25.1■■□□□ 1.61
CLN3-263ENST00000637871 CHD2O14647 1828 aaKnown RBP25.08■■□□□ 1.61
CLN3-263ENST00000637871 KIAA1210Q9ULL0 1709 aa25.07■■□□□ 1.6
CLN3-263ENST00000637871 ADGRB1O14514 1584 aa25.07■■□□□ 1.6
CLN3-263ENST00000637871 NBPF1Q3BBV0 1214 aa25.07■■□□□ 1.6
CLN3-263ENST00000637871 XRN1Q8IZH2 1706 aaKnown RBP25.05■■□□□ 1.6
CLN3-263ENST00000637871 NWD1Q149M9 1564 aa25.04■■□□□ 1.6
CLN3-263ENST00000637871 MRS2Q9HD23 443 aa25.03■■□□□ 1.6
CLN3-263ENST00000637871 STK26Q9P289 416 aa25.03■■□□□ 1.6
CLN3-263ENST00000637871 TMF1P82094 1093 aa25.02■■□□□ 1.6
CLN3-263ENST00000637871 RALBP1Q15311 655 aa25.01■■□□□ 1.59
CLN3-263ENST00000637871 YTHDC2Q9H6S0 1430 aaKnown RBP25.01■■□□□ 1.59
CLN3-263ENST00000637871 KCNA6P17658 529 aa25.01■■□□□ 1.59
CLN3-263ENST00000637871 POLR3GLQ9BT43 218 aa25.01■■□□□ 1.59
CLN3-263ENST00000637871 AMOTL2Q9Y2J4 779 aa25.01■■□□□ 1.59
CLN3-263ENST00000637871 PIK3R4Q99570 1358 aa25■■□□□ 1.59
CLN3-263ENST00000637871 CDCA8Q53HL2 280 aa25■■□□□ 1.59
CLN3-263ENST00000637871 TESK2Q96S53 571 aa25■■□□□ 1.59
CLN3-263ENST00000637871 LTBP4Q8N2S1 1624 aa24.99■■□□□ 1.59
CLN3-263ENST00000637871 RBM33Q96EV2 1170 aaKnown RBP24.99■■□□□ 1.59
CLN3-263ENST00000637871 HNRNPUQ00839 825 aaKnown RBP eCLIP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms