RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 SLC26A8Q96RN1 970 aa11.51□□□□□ -0.57
CIITA-214ENST00000636238 TBX22Q9Y458 520 aa11.51□□□□□ -0.57
CIITA-214ENST00000636238 CEP152O94986 1710 aa11.51□□□□□ -0.57
CIITA-214ENST00000636238 CADPS2Q86UW7 1296 aa11.5□□□□□ -0.57
CIITA-214ENST00000636238 RRP7BPQ9NSQ0 103 aa11.5□□□□□ -0.57
CIITA-214ENST00000636238 ZFYVE9O95405 1425 aa11.5□□□□□ -0.57
CIITA-214ENST00000636238 DAPK1P53355 1430 aa11.5□□□□□ -0.57
CIITA-214ENST00000636238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.49□□□□□ -0.57
CIITA-214ENST00000636238 KANK4Q5T7N3 995 aaPredicted RBP11.48□□□□□ -0.57
CIITA-214ENST00000636238 UPF1Q92900 1129 aaKnown RBP eCLIP11.48□□□□□ -0.57
CIITA-214ENST00000636238 C19orf44Q9H6X5 657 aa11.48□□□□□ -0.57
CIITA-214ENST00000636238 AHDC1Q5TGY3 1603 aaPredicted RBP11.47□□□□□ -0.57
CIITA-214ENST00000636238 DCCP43146 1447 aa11.47□□□□□ -0.57
CIITA-214ENST00000636238 COL16A1Q07092 1604 aaPredicted RBP11.46□□□□□ -0.57
CIITA-214ENST00000636238 ADGRL2O95490 1459 aa11.46□□□□□ -0.57
CIITA-214ENST00000636238 PPP1R15AO75807 674 aaPredicted RBP11.46□□□□□ -0.57
CIITA-214ENST00000636238 MEX3CQ5U5Q3 659 aaKnown RBP11.46□□□□□ -0.57
CIITA-214ENST00000636238 BCANQ96GW7 911 aa11.46□□□□□ -0.57
CIITA-214ENST00000636238 DIP2AQ14689 1571 aa11.45□□□□□ -0.58
CIITA-214ENST00000636238 RIMS2Q9UQ26 1411 aa11.45□□□□□ -0.58
CIITA-214ENST00000636238 ATF3P18847 181 aa11.45□□□□□ -0.58
CIITA-214ENST00000636238 RXRBP28702 533 aa11.45□□□□□ -0.58
CIITA-214ENST00000636238 PHLPP1O60346 1717 aa11.45□□□□□ -0.58
CIITA-214ENST00000636238 CROCC2H7BZ55 1655 aa11.45□□□□□ -0.58
CIITA-214ENST00000636238 LRP6O75581 1613 aa11.44□□□□□ -0.58
CIITA-214ENST00000636238 PTPN23Q9H3S7 1636 aa11.43□□□□□ -0.58
CIITA-214ENST00000636238 APLP2Q06481 763 aa11.43□□□□□ -0.58
CIITA-214ENST00000636238 FOXD1Q16676 465 aa11.43□□□□□ -0.58
CIITA-214ENST00000636238 C14orf37Q86TY3 774 aa11.42□□□□□ -0.58
CIITA-214ENST00000636238 RBM33Q96EV2 1170 aaKnown RBP11.42□□□□□ -0.58
CIITA-214ENST00000636238 ADAMTS13Q76LX8 1427 aa11.42□□□□□ -0.58
CIITA-214ENST00000636238 SETD5Q9C0A6 1442 aa11.42□□□□□ -0.58
CIITA-214ENST00000636238 ANKRD50Q9ULJ7 1429 aa11.42□□□□□ -0.58
CIITA-214ENST00000636238 SHPRHQ149N8 1683 aa11.41□□□□□ -0.58
CIITA-214ENST00000636238 BRINP3Q76B58 766 aa11.39□□□□□ -0.59
CIITA-214ENST00000636238 LRRC59Q96AG4 307 aaKnown RBP11.39□□□□□ -0.59
CIITA-214ENST00000636238 CHD2O14647 1828 aaKnown RBP11.39□□□□□ -0.59
CIITA-214ENST00000636238 RBM6P78332 1123 aaKnown RBP11.38□□□□□ -0.59
CIITA-214ENST00000636238 TRIM52Q96A61 297 aa11.38□□□□□ -0.59
CIITA-214ENST00000636238 TRPM2O94759 1503 aa11.38□□□□□ -0.59
CIITA-214ENST00000636238 TMEM131LA2VDJ0 1609 aa11.38□□□□□ -0.59
CIITA-214ENST00000636238 CHIC2Q9UKJ5 165 aa11.37□□□□□ -0.59
CIITA-214ENST00000636238 SETD1AO15047 1707 aaKnown RBP11.37□□□□□ -0.59
CIITA-214ENST00000636238 AFF2P51816 1311 aa11.36□□□□□ -0.59
CIITA-214ENST00000636238 NGLY1Q96IV0 654 aa11.36□□□□□ -0.59
CIITA-214ENST00000636238 AMOTL2Q9Y2J4 779 aa11.36□□□□□ -0.59
CIITA-214ENST00000636238 CFAP65Q6ZU64 1925 aaKnown RBP11.36□□□□□ -0.59
CIITA-214ENST00000636238 ASXL1Q8IXJ9 1541 aa11.35□□□□□ -0.59
CIITA-214ENST00000636238 ROCK1Q13464 1354 aa11.34□□□□□ -0.59
CIITA-214ENST00000636238 MST1RQ04912 1400 aa11.34□□□□□ -0.59
CIITA-214ENST00000636238 ATAD2Q6PL18 1390 aa11.33□□□□□ -0.6
CIITA-214ENST00000636238 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.33□□□□□ -0.6
CIITA-214ENST00000636238 RGS12O14924 1447 aa11.33□□□□□ -0.6
CIITA-214ENST00000636238 UNC13BO14795 1591 aa11.33□□□□□ -0.6
CIITA-214ENST00000636238 PNPLA6Q8IY17 1366 aa11.32□□□□□ -0.6
CIITA-214ENST00000636238 CCDC125Q86Z20 511 aa11.32□□□□□ -0.6
CIITA-214ENST00000636238 QTRT2Q9H974 415 aaKnown RBP11.32□□□□□ -0.6
CIITA-214ENST00000636238 PTPRUQ92729 1446 aa11.32□□□□□ -0.6
CIITA-214ENST00000636238 ADGRL3Q9HAR2 1447 aa11.32□□□□□ -0.6
CIITA-214ENST00000636238 SETBP1Q9Y6X0 1596 aa11.32□□□□□ -0.6
CIITA-214ENST00000636238 NUTM2BA6NNL0 878 aaPredicted RBP11.31□□□□□ -0.6
CIITA-214ENST00000636238 NUTM2EB1AL46 878 aaPredicted RBP11.31□□□□□ -0.6
CIITA-214ENST00000636238 CHGAP10645 457 aaKnown RBP11.31□□□□□ -0.6
CIITA-214ENST00000636238 NUTM2AQ8IVF1 878 aaPredicted RBP11.31□□□□□ -0.6
CIITA-214ENST00000636238 GCC2Q8IWJ2 1684 aa11.3□□□□□ -0.6
CIITA-214ENST00000636238 PTCH1Q13635 1447 aa11.3□□□□□ -0.6
CIITA-214ENST00000636238 PPARGC1BQ86YN6 1023 aaKnown RBP11.3□□□□□ -0.6
CIITA-214ENST00000636238 SRCAPQ6ZRS2 3230 aa11.3□□□□□ -0.6
CIITA-214ENST00000636238 PRAG1Q86YV5 1406 aa11.29□□□□□ -0.6
CIITA-214ENST00000636238 NHSL1Q5SYE7 1610 aa11.29□□□□□ -0.6
CIITA-214ENST00000636238 XRN1Q8IZH2 1706 aaKnown RBP11.29□□□□□ -0.6
CIITA-214ENST00000636238 FAM50AQ14320 339 aaKnown RBP11.28□□□□□ -0.6
CIITA-214ENST00000636238 FNBP4Q8N3X1 1017 aaPredicted RBP11.28□□□□□ -0.6
CIITA-214ENST00000636238 C8orf37Q96NL8 207 aa11.28□□□□□ -0.6
CIITA-214ENST00000636238 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
CIITA-214ENST00000636238 TRPC5Q9UL62 973 aaPredicted RBP11.28□□□□□ -0.6
CIITA-214ENST00000636238 IQGAP3Q86VI3 1631 aa11.27□□□□□ -0.6
CIITA-214ENST00000636238 NUTM2DQ5VT03 806 aaPredicted RBP11.27□□□□□ -0.61
CIITA-214ENST00000636238 SOS2Q07890 1332 aaPredicted RBP11.27□□□□□ -0.61
CIITA-214ENST00000636238 LAMC1P11047 1609 aa11.26□□□□□ -0.61
CIITA-214ENST00000636238 NUP155O75694 1391 aa11.26□□□□□ -0.61
CIITA-214ENST00000636238 C1orf167Q5SNV9 1468 aa11.25□□□□□ -0.61
CIITA-214ENST00000636238 METP08581 1390 aa11.25□□□□□ -0.61
CIITA-214ENST00000636238 USP21Q9UK80 565 aa11.24□□□□□ -0.61
CIITA-214ENST00000636238 ATRNO75882 1429 aa11.24□□□□□ -0.61
CIITA-214ENST00000636238 E9PCH4 1651 aa11.24□□□□□ -0.61
CIITA-214ENST00000636238 NRXN3Q9Y4C0 1643 aa11.23□□□□□ -0.61
CIITA-214ENST00000636238 HFM1A2PYH4 1435 aa11.22□□□□□ -0.61
CIITA-214ENST00000636238 MYO5BQ9ULV0 1848 aa11.21□□□□□ -0.61
CIITA-214ENST00000636238 NPHP3Q7Z494 1330 aa11.21□□□□□ -0.61
CIITA-214ENST00000636238 VGFO15240 615 aaPredicted RBP11.21□□□□□ -0.61
CIITA-214ENST00000636238 ADAMTS2O95450 1211 aa11.21□□□□□ -0.61
CIITA-214ENST00000636238 ZNF326Q5BKZ1 582 aaKnown RBP11.21□□□□□ -0.61
CIITA-214ENST00000636238 MYOM2P54296 1465 aa11.2□□□□□ -0.62
CIITA-214ENST00000636238 LRPPRCP42704 1394 aaKnown RBP11.2□□□□□ -0.62
CIITA-214ENST00000636238 RPGRIP1LQ68CZ1 1315 aa11.2□□□□□ -0.62
CIITA-214ENST00000636238 COL22A1Q8NFW1 1626 aaPredicted RBP11.18□□□□□ -0.62
CIITA-214ENST00000636238 NEXMIFQ5QGS0 1516 aa11.18□□□□□ -0.62
CIITA-214ENST00000636238 BLMP54132 1417 aaPredicted RBP11.18□□□□□ -0.62
CIITA-214ENST00000636238 DDX17Q92841 729 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms