RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 PROSER2Q86WR7 435 aaPredicted RBP24.36■■□□□ 1.49
PNKP-222ENST00000629088 UNC13BO14795 1591 aa24.36■■□□□ 1.49
PNKP-222ENST00000629088 GCC2Q8IWJ2 1684 aa24.32■■□□□ 1.48
PNKP-222ENST00000629088 BCANQ96GW7 911 aa24.31■■□□□ 1.48
PNKP-222ENST00000629088 IQGAP3Q86VI3 1631 aa24.27■■□□□ 1.48
PNKP-222ENST00000629088 ZFYVE9O95405 1425 aa24.25■■□□□ 1.47
PNKP-222ENST00000629088 HDGFP51858 240 aaKnown RBP24.24■■□□□ 1.47
PNKP-222ENST00000629088 NKTRP30414 1462 aaKnown RBP24.24■■□□□ 1.47
PNKP-222ENST00000629088 TMEM131LA2VDJ0 1609 aa24.23■■□□□ 1.47
PNKP-222ENST00000629088 E9PCH4 1651 aa24.22■■□□□ 1.47
PNKP-222ENST00000629088 NWD1Q149M9 1564 aa24.22■■□□□ 1.47
PNKP-222ENST00000629088 POTEAQ6S8J7 498 aa24.22■■□□□ 1.47
PNKP-222ENST00000629088 SLAIN2Q9P270 581 aa24.22■■□□□ 1.47
PNKP-222ENST00000629088 ROBO1Q9Y6N7 1651 aa24.21■■□□□ 1.47
PNKP-222ENST00000629088 MSH6P52701 1360 aa24.21■■□□□ 1.47
PNKP-222ENST00000629088 PLEKHG1Q9ULL1 1385 aa24.21■■□□□ 1.47
PNKP-222ENST00000629088 PPP1R15AO75807 674 aaPredicted RBP24.21■■□□□ 1.47
PNKP-222ENST00000629088 RIMS2Q9UQ26 1411 aa24.2■■□□□ 1.46
PNKP-222ENST00000629088 NUP155O75694 1391 aa24.18■■□□□ 1.46
PNKP-222ENST00000629088 CHGAP10645 457 aaKnown RBP24.17■■□□□ 1.46
PNKP-222ENST00000629088 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.17■■□□□ 1.46
PNKP-222ENST00000629088 MYO5BQ9ULV0 1848 aa24.17■■□□□ 1.46
PNKP-222ENST00000629088 TBX22Q9Y458 520 aa24.16■■□□□ 1.46
PNKP-222ENST00000629088 NUTM2DQ5VT03 806 aaPredicted RBP24.14■■□□□ 1.45
PNKP-222ENST00000629088 RRBP1Q9P2E9 1410 aaKnown RBP24.13■■□□□ 1.45
PNKP-222ENST00000629088 ITGAEP38570 1179 aa24.13■■□□□ 1.45
PNKP-222ENST00000629088 DIP2AQ14689 1571 aa24.11■■□□□ 1.45
PNKP-222ENST00000629088 JCADQ9P266 1359 aa24.1■■□□□ 1.45
PNKP-222ENST00000629088 CHD2O14647 1828 aaKnown RBP24.1■■□□□ 1.45
PNKP-222ENST00000629088 ADAMTS13Q76LX8 1427 aa24.09■■□□□ 1.45
PNKP-222ENST00000629088 PIK3R4Q99570 1358 aa24.08■■□□□ 1.45
PNKP-222ENST00000629088 C14orf37Q86TY3 774 aa24.08■■□□□ 1.45
PNKP-222ENST00000629088 PPARGC1BQ86YN6 1023 aaKnown RBP24.08■■□□□ 1.45
PNKP-222ENST00000629088 NCOA3Q9Y6Q9 1424 aa24.08■■□□□ 1.44
PNKP-222ENST00000629088 PHLPP1O60346 1717 aa24.05■■□□□ 1.44
PNKP-222ENST00000629088 C19orf44Q9H6X5 657 aa24.04■■□□□ 1.44
PNKP-222ENST00000629088 SPHKAPQ2M3C7 1700 aa24.04■■□□□ 1.44
PNKP-222ENST00000629088 CADPS2Q86UW7 1296 aa24.03■■□□□ 1.44
PNKP-222ENST00000629088 ATF3P18847 181 aa24.02■■□□□ 1.44
PNKP-222ENST00000629088 NAIPQ13075 1403 aa24.01■■□□□ 1.43
PNKP-222ENST00000629088 AMOTL2Q9Y2J4 779 aa24.01■■□□□ 1.43
PNKP-222ENST00000629088 TRPM2O94759 1503 aa24■■□□□ 1.43
PNKP-222ENST00000629088 COL16A1Q07092 1604 aaPredicted RBP23.99■■□□□ 1.43
PNKP-222ENST00000629088 PTPRUQ92729 1446 aa23.99■■□□□ 1.43
PNKP-222ENST00000629088 LRP6O75581 1613 aa23.97■■□□□ 1.43
PNKP-222ENST00000629088 SPATA31A6Q5VVP1 1343 aa23.97■■□□□ 1.43
PNKP-222ENST00000629088 SETBP1Q9Y6X0 1596 aa23.96■■□□□ 1.43
PNKP-222ENST00000629088 HFM1A2PYH4 1435 aa23.95■■□□□ 1.42
PNKP-222ENST00000629088 MEX3CQ5U5Q3 659 aaKnown RBP23.95■■□□□ 1.42
PNKP-222ENST00000629088 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.95■■□□□ 1.42
PNKP-222ENST00000629088 BRINP3Q76B58 766 aa23.94■■□□□ 1.42
PNKP-222ENST00000629088 AHDC1Q5TGY3 1603 aaPredicted RBP23.92■■□□□ 1.42
PNKP-222ENST00000629088 NRXN3Q9Y4C0 1643 aa23.92■■□□□ 1.42
PNKP-222ENST00000629088 CLTCL1P53675 1640 aa23.91■■□□□ 1.42
PNKP-222ENST00000629088 ZNF772Q68DY9 489 aaPredicted RBP23.9■■□□□ 1.42
PNKP-222ENST00000629088 ZNF326Q5BKZ1 582 aaKnown RBP23.89■■□□□ 1.41
PNKP-222ENST00000629088 SETD1AO15047 1707 aaKnown RBP23.89■■□□□ 1.41
PNKP-222ENST00000629088 XRN1Q8IZH2 1706 aaKnown RBP23.88■■□□□ 1.41
PNKP-222ENST00000629088 DCCP43146 1447 aa23.88■■□□□ 1.41
PNKP-222ENST00000629088 NEXMIFQ5QGS0 1516 aa23.88■■□□□ 1.41
PNKP-222ENST00000629088 NUTM2BA6NNL0 878 aaPredicted RBP23.87■■□□□ 1.41
PNKP-222ENST00000629088 NUTM2EB1AL46 878 aaPredicted RBP23.87■■□□□ 1.41
PNKP-222ENST00000629088 NUTM2AQ8IVF1 878 aaPredicted RBP23.87■■□□□ 1.41
PNKP-222ENST00000629088 METP08581 1390 aa23.87■■□□□ 1.41
PNKP-222ENST00000629088 TRIM52Q96A61 297 aa23.86■■□□□ 1.41
PNKP-222ENST00000629088 KIF1BO60333 1816 aa23.85■■□□□ 1.41
PNKP-222ENST00000629088 SHPRHQ149N8 1683 aa23.83■■□□□ 1.41
PNKP-222ENST00000629088 MST1RQ04912 1400 aa23.83■■□□□ 1.4
PNKP-222ENST00000629088 ASXL1Q8IXJ9 1541 aa23.82■■□□□ 1.4
PNKP-222ENST00000629088 RXRBP28702 533 aa23.81■■□□□ 1.4
PNKP-222ENST00000629088 UPF1Q92900 1129 aaKnown RBP eCLIP23.81■■□□□ 1.4
PNKP-222ENST00000629088 SLC4A1APQ9BWU0 796 aaKnown RBP23.8■■□□□ 1.4
PNKP-222ENST00000629088 SETD5Q9C0A6 1442 aa23.79■■□□□ 1.4
PNKP-222ENST00000629088 DDX17Q92841 729 aaKnown RBP23.79■■□□□ 1.4
PNKP-222ENST00000629088 RPGRIP1LQ68CZ1 1315 aa23.79■■□□□ 1.4
PNKP-222ENST00000629088 VGFO15240 615 aaPredicted RBP23.78■■□□□ 1.4
PNKP-222ENST00000629088 LRRC59Q96AG4 307 aaKnown RBP23.77■■□□□ 1.4
PNKP-222ENST00000629088 AFF2P51816 1311 aa23.77■■□□□ 1.4
PNKP-222ENST00000629088 ADGRL3Q9HAR2 1447 aa23.76■■□□□ 1.39
PNKP-222ENST00000629088 PRAG1Q86YV5 1406 aa23.75■■□□□ 1.39
PNKP-222ENST00000629088 PTCH1Q13635 1447 aa23.73■■□□□ 1.39
PNKP-222ENST00000629088 PNPLA6Q8IY17 1366 aa23.71■■□□□ 1.39
PNKP-222ENST00000629088 C8orf37Q96NL8 207 aa23.71■■□□□ 1.39
PNKP-222ENST00000629088 NHSL1Q5SYE7 1610 aa23.7■■□□□ 1.39
PNKP-222ENST00000629088 ACIN1Q9UKV3 1341 aaKnown RBP23.7■■□□□ 1.38
PNKP-222ENST00000629088 CDK12Q9NYV4 1490 aaPredicted RBP23.69■■□□□ 1.38
PNKP-222ENST00000629088 PPLO60437 1756 aa23.68■■□□□ 1.38
PNKP-222ENST00000629088 QTRT2Q9H974 415 aaKnown RBP23.68■■□□□ 1.38
PNKP-222ENST00000629088 C1orf167Q5SNV9 1468 aa23.68■■□□□ 1.38
PNKP-222ENST00000629088 NALCNQ8IZF0 1738 aa23.67■■□□□ 1.38
PNKP-222ENST00000629088 CCDC144AA2RUR9 1427 aa23.67■■□□□ 1.38
PNKP-222ENST00000629088 ROBO2Q9HCK4 1378 aa23.66■■□□□ 1.38
PNKP-222ENST00000629088 ORAI2Q96SN7 254 aa23.65■■□□□ 1.38
PNKP-222ENST00000629088 ADAMTS2O95450 1211 aa23.64■■□□□ 1.37
PNKP-222ENST00000629088 RBM6P78332 1123 aaKnown RBP23.64■■□□□ 1.37
PNKP-222ENST00000629088 NGLY1Q96IV0 654 aa23.62■■□□□ 1.37
PNKP-222ENST00000629088 RGS12O14924 1447 aa23.61■■□□□ 1.37
PNKP-222ENST00000629088 SPATA31E1Q6ZUB1 1445 aa23.61■■□□□ 1.37
PNKP-222ENST00000629088 MPHOSPH9Q99550 1183 aa23.61■■□□□ 1.37
PNKP-222ENST00000629088 SOS2Q07890 1332 aaPredicted RBP23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms