RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TXNDC2Q86VQ3 553 aa27.9■■■□□ 2.06
SQSTM1-216ENST00000626660 RIMS2Q9UQ26 1411 aa27.9■■■□□ 2.06
SQSTM1-216ENST00000626660 SCAF11Q99590 1463 aaKnown RBP27.89■■■□□ 2.06
SQSTM1-216ENST00000626660 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.88■■■□□ 2.05
SQSTM1-216ENST00000626660 ZFYVE9O95405 1425 aa27.86■■■□□ 2.05
SQSTM1-216ENST00000626660 PPP1R15AO75807 674 aaPredicted RBP27.86■■■□□ 2.05
SQSTM1-216ENST00000626660 LTKP29376 864 aa27.85■■■□□ 2.05
SQSTM1-216ENST00000626660 NEURL4Q96JN8 1562 aa27.85■■■□□ 2.05
SQSTM1-216ENST00000626660 SPATA31E1Q6ZUB1 1445 aa27.84■■■□□ 2.05
SQSTM1-216ENST00000626660 NPHP4O75161 1426 aaPredicted RBP27.84■■■□□ 2.05
SQSTM1-216ENST00000626660 MED14O60244 1454 aa27.83■■■□□ 2.05
SQSTM1-216ENST00000626660 RPGRIP1LQ68CZ1 1315 aa27.83■■■□□ 2.05
SQSTM1-216ENST00000626660 RGL3Q3MIN7 710 aa27.82■■■□□ 2.04
SQSTM1-216ENST00000626660 NEXMIFQ5QGS0 1516 aa27.81■■■□□ 2.04
SQSTM1-216ENST00000626660 IQGAP1P46940 1657 aa27.81■■■□□ 2.04
SQSTM1-216ENST00000626660 NUTM2DQ5VT03 806 aaPredicted RBP27.78■■■□□ 2.04
SQSTM1-216ENST00000626660 PPLO60437 1756 aa27.78■■■□□ 2.04
SQSTM1-216ENST00000626660 BCANQ96GW7 911 aa27.77■■■□□ 2.04
SQSTM1-216ENST00000626660 PLEKHG1Q9ULL1 1385 aa27.76■■■□□ 2.03
SQSTM1-216ENST00000626660 VGFO15240 615 aaPredicted RBP27.75■■■□□ 2.03
SQSTM1-216ENST00000626660 DISP3Q9P2K9 1392 aa27.74■■■□□ 2.03
SQSTM1-216ENST00000626660 IFT172Q9UG01 1749 aa27.73■■■□□ 2.03
SQSTM1-216ENST00000626660 SIN3AQ96ST3 1273 aa27.71■■■□□ 2.03
SQSTM1-216ENST00000626660 NEUROD1Q13562 356 aa27.7■■■□□ 2.02
SQSTM1-216ENST00000626660 SENP3Q9H4L4 574 aaPredicted RBP27.69■■■□□ 2.02
SQSTM1-216ENST00000626660 CCER1Q8TC90 406 aaPredicted RBP27.67■■■□□ 2.02
SQSTM1-216ENST00000626660 CLSPNQ9HAW4 1339 aa27.66■■■□□ 2.02
SQSTM1-216ENST00000626660 SLC26A8Q96RN1 970 aa27.65■■■□□ 2.02
SQSTM1-216ENST00000626660 DIP2AQ14689 1571 aa27.65■■■□□ 2.02
SQSTM1-216ENST00000626660 SETBP1Q9Y6X0 1596 aa27.65■■■□□ 2.02
SQSTM1-216ENST00000626660 DCAF11Q8TEB1 546 aa27.64■■■□□ 2.02
SQSTM1-216ENST00000626660 MYOM2P54296 1465 aa27.64■■■□□ 2.01
SQSTM1-216ENST00000626660 STAC3Q96MF2 364 aa27.63■■■□□ 2.01
SQSTM1-216ENST00000626660 ADGRF5Q8IZF2 1346 aa27.62■■■□□ 2.01
SQSTM1-216ENST00000626660 NRXN3Q9Y4C0 1643 aa27.61■■■□□ 2.01
SQSTM1-216ENST00000626660 KDM2AQ9Y2K7 1162 aa27.61■■■□□ 2.01
SQSTM1-216ENST00000626660 TBX22Q9Y458 520 aa27.61■■■□□ 2.01
SQSTM1-216ENST00000626660 ADAMTS13Q76LX8 1427 aa27.6■■■□□ 2.01
SQSTM1-216ENST00000626660 ZNF335Q9H4Z2 1342 aaPredicted RBP27.57■■■□□ 2
SQSTM1-216ENST00000626660 TONSLQ96HA7 1378 aa27.57■■■□□ 2
SQSTM1-216ENST00000626660 PIK3C2GO75747 1445 aa27.56■■■□□ 2
SQSTM1-216ENST00000626660 NRXN1Q9ULB1 1477 aa27.56■■■□□ 2
SQSTM1-216ENST00000626660 ILDR2Q71H61 639 aa27.55■■■□□ 2
SQSTM1-216ENST00000626660 L3MBTL2Q969R5 705 aa27.55■■■□□ 2
SQSTM1-216ENST00000626660 SOCS7O14512 581 aa27.54■■■□□ 2
SQSTM1-216ENST00000626660 ALKQ9UM73 1620 aa27.54■■■□□ 2
SQSTM1-216ENST00000626660 PIK3R4Q99570 1358 aa27.53■■■□□ 2
SQSTM1-216ENST00000626660 CHD2O14647 1828 aaKnown RBP27.51■■□□□ 1.99
SQSTM1-216ENST00000626660 LAMC1P11047 1609 aa27.51■■□□□ 1.99
SQSTM1-216ENST00000626660 SETD1AO15047 1707 aaKnown RBP27.5■■□□□ 1.99
SQSTM1-216ENST00000626660 KCNA6P17658 529 aa27.5■■□□□ 1.99
SQSTM1-216ENST00000626660 LTBP4Q8N2S1 1624 aa27.49■■□□□ 1.99
SQSTM1-216ENST00000626660 CPS1P31327 1500 aa27.48■■□□□ 1.99
SQSTM1-216ENST00000626660 STRCP1A6NGW2 1772 aa27.48■■□□□ 1.99
SQSTM1-216ENST00000626660 NWD1Q149M9 1564 aa27.47■■□□□ 1.99
SQSTM1-216ENST00000626660 METP08581 1390 aa27.47■■□□□ 1.99
SQSTM1-216ENST00000626660 C14orf93Q9H972 538 aaKnown RBP27.46■■□□□ 1.99
SQSTM1-216ENST00000626660 IQSEC2Q5JU85 1478 aa27.45■■□□□ 1.99
SQSTM1-216ENST00000626660 PRAG1Q86YV5 1406 aa27.44■■□□□ 1.98
SQSTM1-216ENST00000626660 CFAP70Q5T0N1 1121 aa27.44■■□□□ 1.98
SQSTM1-216ENST00000626660 NKTRP30414 1462 aaKnown RBP27.43■■□□□ 1.98
SQSTM1-216ENST00000626660 AMOTL2Q9Y2J4 779 aa27.42■■□□□ 1.98
SQSTM1-216ENST00000626660 PTPRUQ92729 1446 aa27.41■■□□□ 1.98
SQSTM1-216ENST00000626660 TIMELESSQ9UNS1 1208 aa27.41■■□□□ 1.98
SQSTM1-216ENST00000626660 XRN1Q8IZH2 1706 aaKnown RBP27.4■■□□□ 1.98
SQSTM1-216ENST00000626660 KIAA1210Q9ULL0 1709 aa27.4■■□□□ 1.98
SQSTM1-216ENST00000626660 UBAP1LF5GYI3 381 aa27.38■■□□□ 1.97
SQSTM1-216ENST00000626660 TMEM132EQ6IEE7 984 aa27.38■■□□□ 1.97
SQSTM1-216ENST00000626660 PROSER2Q86WR7 435 aaPredicted RBP27.38■■□□□ 1.97
SQSTM1-216ENST00000626660 ASXL1Q8IXJ9 1541 aa27.37■■□□□ 1.97
SQSTM1-216ENST00000626660 LRRC7Q96NW7 1537 aa27.36■■□□□ 1.97
SQSTM1-216ENST00000626660 LRPPRCP42704 1394 aaKnown RBP27.35■■□□□ 1.97
SQSTM1-216ENST00000626660 YTHDC2Q9H6S0 1430 aaKnown RBP27.33■■□□□ 1.97
SQSTM1-216ENST00000626660 STK26Q9P289 416 aa27.33■■□□□ 1.97
SQSTM1-216ENST00000626660 ADGRB1O14514 1584 aa27.32■■□□□ 1.96
SQSTM1-216ENST00000626660 KNDC1Q76NI1 1749 aa27.32■■□□□ 1.96
SQSTM1-216ENST00000626660 TRPM1Q7Z4N2 1603 aa27.31■■□□□ 1.96
SQSTM1-216ENST00000626660 TMEM94Q12767 1356 aa27.31■■□□□ 1.96
SQSTM1-216ENST00000626660 PTCH1Q13635 1447 aa27.31■■□□□ 1.96
SQSTM1-216ENST00000626660 ABCC11Q96J66 1382 aa27.3■■□□□ 1.96
SQSTM1-216ENST00000626660 NBPF8Q3BBV2 869 aa27.29■■□□□ 1.96
SQSTM1-216ENST00000626660 TECPR2O15040 1411 aa27.29■■□□□ 1.96
SQSTM1-216ENST00000626660 XIRP1Q702N8 1843 aaKnown RBP27.29■■□□□ 1.96
SQSTM1-216ENST00000626660 NCOA3Q9Y6Q9 1424 aa27.26■■□□□ 1.95
SQSTM1-216ENST00000626660 ROBO2Q9HCK4 1378 aa27.26■■□□□ 1.95
SQSTM1-216ENST00000626660 NBPF1Q3BBV0 1214 aa27.26■■□□□ 1.95
SQSTM1-216ENST00000626660 C14orf37Q86TY3 774 aa27.26■■□□□ 1.95
SQSTM1-216ENST00000626660 RBM33Q96EV2 1170 aaKnown RBP27.25■■□□□ 1.95
SQSTM1-216ENST00000626660 ROCK2O75116 1388 aaKnown RBP27.24■■□□□ 1.95
SQSTM1-216ENST00000626660 SCAF1Q9H7N4 1312 aaKnown RBP27.23■■□□□ 1.95
SQSTM1-216ENST00000626660 DLC1Q96QB1 1528 aa27.23■■□□□ 1.95
SQSTM1-216ENST00000626660 RALGAPBQ86X10 1494 aa27.22■■□□□ 1.95
SQSTM1-216ENST00000626660 SIRT1Q96EB6 747 aa27.22■■□□□ 1.95
SQSTM1-216ENST00000626660 TRAK1Q9UPV9 953 aa27.22■■□□□ 1.95
SQSTM1-216ENST00000626660 FAM135BQ49AJ0 1406 aa27.22■■□□□ 1.95
SQSTM1-216ENST00000626660 MSH6P52701 1360 aa27.21■■□□□ 1.95
SQSTM1-216ENST00000626660 POGKQ9P215 609 aa27.18■■□□□ 1.94
SQSTM1-216ENST00000626660 ARHGEF28Q8N1W1 1705 aaKnown RBP27.17■■□□□ 1.94
SQSTM1-216ENST00000626660 WAPLQ7Z5K2 1190 aa27.17■■□□□ 1.94
SQSTM1-216ENST00000626660 GPRASP1Q5JY77 1395 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms