RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 LMTK3Q96Q04 1460 aa11.83□□□□□ -0.52
HDAC9-229ENST00000622668 DISP1Q96F81 1524 aa11.83□□□□□ -0.52
HDAC9-229ENST00000622668 TEFQ10587 303 aa11.83□□□□□ -0.52
HDAC9-229ENST00000622668 PDE3BQ13370 1112 aa11.82□□□□□ -0.52
HDAC9-229ENST00000622668 FRAT1Q92837 279 aaPredicted RBP11.82□□□□□ -0.52
HDAC9-229ENST00000622668 CABP1Q9NZU7 370 aa11.82□□□□□ -0.52
HDAC9-229ENST00000622668 FAM135AQ9P2D6 1515 aa11.82□□□□□ -0.52
HDAC9-229ENST00000622668 ABCC5O15440 1437 aa11.82□□□□□ -0.52
HDAC9-229ENST00000622668 PBRM1Q86U86 1689 aa11.82□□□□□ -0.52
HDAC9-229ENST00000622668 GOLGA2Q08379 1002 aa11.82□□□□□ -0.52
HDAC9-229ENST00000622668 PPP1R1BQ9UD71 204 aaPredicted RBP11.81□□□□□ -0.52
HDAC9-229ENST00000622668 USP47Q96K76 1375 aa11.81□□□□□ -0.52
HDAC9-229ENST00000622668 FTSJ3Q8IY81 847 aaKnown RBP11.81□□□□□ -0.52
HDAC9-229ENST00000622668 ABCC10Q5T3U5 1492 aa11.81□□□□□ -0.52
HDAC9-229ENST00000622668 MSH6P52701 1360 aa11.81□□□□□ -0.52
HDAC9-229ENST00000622668 ANKRD30BQ9BXX2 1392 aa11.81□□□□□ -0.52
HDAC9-229ENST00000622668 UHRF1BP1Q6BDS2 1440 aa11.81□□□□□ -0.52
HDAC9-229ENST00000622668 ABCA5Q8WWZ7 1642 aa11.8□□□□□ -0.52
HDAC9-229ENST00000622668 MIER1Q8N108 512 aa11.8□□□□□ -0.52
HDAC9-229ENST00000622668 UHRF1BP1LA0JNW5 1464 aa11.79□□□□□ -0.52
HDAC9-229ENST00000622668 TTC5Q8N0Z6 440 aa11.79□□□□□ -0.52
HDAC9-229ENST00000622668 RTEL1-TNFRSF6BF6WH68 1400 aa11.79□□□□□ -0.52
HDAC9-229ENST00000622668 DDX54Q8TDD1 881 aaKnown RBP11.78□□□□□ -0.52
HDAC9-229ENST00000622668 PHF8Q9UPP1 1060 aa11.78□□□□□ -0.52
HDAC9-229ENST00000622668 KIAA1107Q9UPP5 1409 aa11.78□□□□□ -0.52
HDAC9-229ENST00000622668 CCDC61Q9Y6R9 512 aa11.78□□□□□ -0.52
HDAC9-229ENST00000622668 KDM5BQ9UGL1 1544 aa11.78□□□□□ -0.52
HDAC9-229ENST00000622668 NCOA1Q15788 1441 aa11.78□□□□□ -0.52
HDAC9-229ENST00000622668 OS9Q13438 667 aaPredicted RBP11.78□□□□□ -0.52
HDAC9-229ENST00000622668 NGEFQ8N5V2 710 aa11.77□□□□□ -0.52
HDAC9-229ENST00000622668 SLC12A5Q9H2X9 1139 aa11.77□□□□□ -0.52
HDAC9-229ENST00000622668 SYCP2Q9BX26 1530 aa11.77□□□□□ -0.52
HDAC9-229ENST00000622668 NUDT16Q96DE0 195 aaKnown RBP11.77□□□□□ -0.53
HDAC9-229ENST00000622668 CHD1O14646 1710 aa11.77□□□□□ -0.53
HDAC9-229ENST00000622668 CCDC146Q8IYE0 955 aa11.75□□□□□ -0.53
HDAC9-229ENST00000622668 C8orf37Q96NL8 207 aa11.75□□□□□ -0.53
HDAC9-229ENST00000622668 ATP10AO60312 1499 aa11.75□□□□□ -0.53
HDAC9-229ENST00000622668 G3V3G9 751 aa11.75□□□□□ -0.53
HDAC9-229ENST00000622668 DCAF8Q5TAQ9 597 aa11.75□□□□□ -0.53
HDAC9-229ENST00000622668 STK31Q9BXU1 1019 aa11.75□□□□□ -0.53
HDAC9-229ENST00000622668 CALD1Q05682 793 aaKnown RBP11.74□□□□□ -0.53
HDAC9-229ENST00000622668 ZNF692Q9BU19 519 aaPredicted RBP11.74□□□□□ -0.53
HDAC9-229ENST00000622668 ADGRF5Q8IZF2 1346 aa11.74□□□□□ -0.53
HDAC9-229ENST00000622668 WDR97A6NE52 1622 aa11.74□□□□□ -0.53
HDAC9-229ENST00000622668 TSPOAP1O95153 1857 aa11.74□□□□□ -0.53
HDAC9-229ENST00000622668 CHMP3Q9Y3E7 222 aa11.74□□□□□ -0.53
HDAC9-229ENST00000622668 ROCK1Q13464 1354 aa11.73□□□□□ -0.53
HDAC9-229ENST00000622668 KRT28Q7Z3Y7 464 aa11.73□□□□□ -0.53
HDAC9-229ENST00000622668 RRP7AQ9Y3A4 280 aaKnown RBP11.73□□□□□ -0.53
HDAC9-229ENST00000622668 DIAPH1O60610 1272 aaKnown RBP11.73□□□□□ -0.53
HDAC9-229ENST00000622668 HMOX1P09601 288 aa11.73□□□□□ -0.53
HDAC9-229ENST00000622668 RALBP1Q15311 655 aa11.73□□□□□ -0.53
HDAC9-229ENST00000622668 ELL2O00472 640 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-229ENST00000622668 KCNA6P17658 529 aa11.72□□□□□ -0.53
HDAC9-229ENST00000622668 C19orf44Q9H6X5 657 aa11.72□□□□□ -0.53
HDAC9-229ENST00000622668 CHMP4AQ9BY43 222 aa11.72□□□□□ -0.53
HDAC9-229ENST00000622668 CNTLNQ9NXG0 1405 aa11.71□□□□□ -0.53
HDAC9-229ENST00000622668 ERCC6L2Q5T890 1561 aa11.71□□□□□ -0.53
HDAC9-229ENST00000622668 NAIPQ13075 1403 aa11.71□□□□□ -0.53
HDAC9-229ENST00000622668 YEATS2Q9ULM3 1422 aa11.71□□□□□ -0.53
HDAC9-229ENST00000622668 LMOD3Q0VAK6 560 aa11.71□□□□□ -0.54
HDAC9-229ENST00000622668 TATP17735 454 aaPredicted RBP11.71□□□□□ -0.54
HDAC9-229ENST00000622668 IRX6P78412 446 aaPredicted RBP11.71□□□□□ -0.54
HDAC9-229ENST00000622668 RBM42Q9BTD8 480 aaKnown RBP11.71□□□□□ -0.54
HDAC9-229ENST00000622668 TAF7LQ5H9L4 462 aa11.7□□□□□ -0.54
HDAC9-229ENST00000622668 EIF2S2P20042 333 aaKnown RBP11.7□□□□□ -0.54
HDAC9-229ENST00000622668 NEO1Q92859 1461 aa11.7□□□□□ -0.54
HDAC9-229ENST00000622668 CTTNBP2Q8WZ74 1663 aa11.69□□□□□ -0.54
HDAC9-229ENST00000622668 PTPN23Q9H3S7 1636 aa11.69□□□□□ -0.54
HDAC9-229ENST00000622668 CHRNA2Q15822 529 aa11.68□□□□□ -0.54
HDAC9-229ENST00000622668 NPHP3Q7Z494 1330 aa11.68□□□□□ -0.54
HDAC9-229ENST00000622668 NOS1P29475 1434 aa11.68□□□□□ -0.54
HDAC9-229ENST00000622668 SLC4A10Q6U841 1118 aa11.68□□□□□ -0.54
HDAC9-229ENST00000622668 CCDC136Q96JN2 1154 aa11.68□□□□□ -0.54
HDAC9-229ENST00000622668 LRPPRCP42704 1394 aaKnown RBP11.67□□□□□ -0.54
HDAC9-229ENST00000622668 NECTIN2Q92692 538 aa11.67□□□□□ -0.54
HDAC9-229ENST00000622668 WASLO00401 505 aaPredicted RBP11.67□□□□□ -0.54
HDAC9-229ENST00000622668 FKBP8Q14318 412 aa11.66□□□□□ -0.54
HDAC9-229ENST00000622668 RIMS2Q9UQ26 1411 aa11.66□□□□□ -0.54
HDAC9-229ENST00000622668 NBPF8Q3BBV2 869 aa11.66□□□□□ -0.54
HDAC9-229ENST00000622668 KCNH5Q8NCM2 988 aa11.66□□□□□ -0.54
HDAC9-229ENST00000622668 RRS1Q15050 365 aaKnown RBP11.66□□□□□ -0.54
HDAC9-229ENST00000622668 LRRC59Q96AG4 307 aaKnown RBP11.65□□□□□ -0.54
HDAC9-229ENST00000622668 CABLES1Q8TDN4 633 aa11.65□□□□□ -0.55
HDAC9-229ENST00000622668 FRAT2O75474 233 aaPredicted RBP11.64□□□□□ -0.55
HDAC9-229ENST00000622668 MTHFSP49914 203 aa11.64□□□□□ -0.55
HDAC9-229ENST00000622668 PLEKHO1Q53GL0 409 aaPredicted RBP11.64□□□□□ -0.55
HDAC9-229ENST00000622668 APBB1O00213 710 aa11.64□□□□□ -0.55
HDAC9-229ENST00000622668 TBX22Q9Y458 520 aa11.64□□□□□ -0.55
HDAC9-229ENST00000622668 ZFYVE16Q7Z3T8 1539 aa11.63□□□□□ -0.55
HDAC9-229ENST00000622668 ATAD2Q6PL18 1390 aa11.63□□□□□ -0.55
HDAC9-229ENST00000622668 FAM177BA6PVY3 158 aa11.63□□□□□ -0.55
HDAC9-229ENST00000622668 SMG6Q86US8 1419 aaKnown RBP11.63□□□□□ -0.55
HDAC9-229ENST00000622668 ZNF530Q6P9A1 599 aaPredicted RBP11.62□□□□□ -0.55
HDAC9-229ENST00000622668 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.62□□□□□ -0.55
HDAC9-229ENST00000622668 SLAIN2Q9P270 581 aa11.62□□□□□ -0.55
HDAC9-229ENST00000622668 ISY1Q9ULR0 285 aaKnown RBP11.62□□□□□ -0.55
HDAC9-229ENST00000622668 KDM6BO15054 1643 aa11.62□□□□□ -0.55
HDAC9-229ENST00000622668 SULT6B1Q6IMI4 303 aa11.61□□□□□ -0.55
HDAC9-229ENST00000622668 DUOX2Q9NRD8 1548 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms