RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 PRDM15P57071 1507 aaPredicted RBP20.48■□□□□ 0.87
NPHP4-211ENST00000622020 IGHDP01880 384 aa20.48■□□□□ 0.87
NPHP4-211ENST00000622020 CANXP27824 592 aaKnown RBP20.48■□□□□ 0.87
NPHP4-211ENST00000622020 CDC42BPBQ9Y5S2 1711 aa20.48■□□□□ 0.87
NPHP4-211ENST00000622020 ARHGEF5Q12774 1597 aa20.47■□□□□ 0.87
NPHP4-211ENST00000622020 AFAP1Q8N556 730 aa20.47■□□□□ 0.87
NPHP4-211ENST00000622020 RRP7AQ9Y3A4 280 aaKnown RBP20.47■□□□□ 0.87
NPHP4-211ENST00000622020 WDR7Q9Y4E6 1490 aa20.46■□□□□ 0.87
NPHP4-211ENST00000622020 PANK1Q8TE04 598 aa20.46■□□□□ 0.87
NPHP4-211ENST00000622020 COG6Q9Y2V7 657 aa20.46■□□□□ 0.87
NPHP4-211ENST00000622020 ZNF521Q96K83 1311 aa20.46■□□□□ 0.87
NPHP4-211ENST00000622020 CFAP70Q5T0N1 1121 aa20.44■□□□□ 0.86
NPHP4-211ENST00000622020 BCL2L13Q9BXK5 485 aa20.43■□□□□ 0.86
NPHP4-211ENST00000622020 SENP3Q9H4L4 574 aaPredicted RBP20.43■□□□□ 0.86
NPHP4-211ENST00000622020 SEC24BO95487 1268 aa20.43■□□□□ 0.86
NPHP4-211ENST00000622020 SLKQ9H2G2 1235 aaPredicted RBP20.41■□□□□ 0.86
NPHP4-211ENST00000622020 TTC37Q6PGP7 1564 aa20.41■□□□□ 0.86
NPHP4-211ENST00000622020 CDCA8Q53HL2 280 aa20.4■□□□□ 0.86
NPHP4-211ENST00000622020 MYO5CQ9NQX4 1742 aa20.4■□□□□ 0.86
NPHP4-211ENST00000622020 ARXQ96QS3 562 aa20.4■□□□□ 0.86
NPHP4-211ENST00000622020 CARD14Q9BXL6 1004 aa20.39■□□□□ 0.85
NPHP4-211ENST00000622020 TNNQ9UQP3 1299 aa20.39■□□□□ 0.85
NPHP4-211ENST00000622020 CHGAP10645 457 aaKnown RBP20.38■□□□□ 0.85
NPHP4-211ENST00000622020 CLUAP1Q96AJ1 413 aa20.38■□□□□ 0.85
NPHP4-211ENST00000622020 PREX2Q70Z35 1606 aa20.38■□□□□ 0.85
NPHP4-211ENST00000622020 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.37■□□□□ 0.859e-7■■■■■ 44.3
NPHP4-211ENST00000622020 EFCAB2Q5VUJ9 269 aa20.37■□□□□ 0.85
NPHP4-211ENST00000622020 E9PSI1 815 aa20.35■□□□□ 0.85
NPHP4-211ENST00000622020 SPRYD3Q8NCJ5 442 aa20.35■□□□□ 0.85
NPHP4-211ENST00000622020 SPAG9O60271 1321 aaKnown RBP20.35■□□□□ 0.85
NPHP4-211ENST00000622020 TRAPPC8Q9Y2L5 1435 aa20.35■□□□□ 0.85
NPHP4-211ENST00000622020 INSRP06213 1382 aa20.34■□□□□ 0.85
NPHP4-211ENST00000622020 CENPJQ9HC77 1338 aaPredicted RBP20.34■□□□□ 0.85
NPHP4-211ENST00000622020 KIF3BO15066 747 aa20.34■□□□□ 0.85
NPHP4-211ENST00000622020 TRMT2AQ8IZ69 625 aaKnown RBP20.34■□□□□ 0.85
NPHP4-211ENST00000622020 NKTRP30414 1462 aaKnown RBP20.33■□□□□ 0.85
NPHP4-211ENST00000622020 UNC13BO14795 1591 aa20.33■□□□□ 0.84
NPHP4-211ENST00000622020 EIF2AK4Q9P2K8 1649 aaKnown RBP20.32■□□□□ 0.84
NPHP4-211ENST00000622020 WWC1Q8IX03 1113 aa20.32■□□□□ 0.84
NPHP4-211ENST00000622020 ADGRF5Q8IZF2 1346 aa20.32■□□□□ 0.84
NPHP4-211ENST00000622020 ASXL1Q8IXJ9 1541 aa20.32■□□□□ 0.84
NPHP4-211ENST00000622020 SCAF11Q99590 1463 aaKnown RBP20.3■□□□□ 0.84
NPHP4-211ENST00000622020 EIF5BO60841 1220 aaKnown RBP20.3■□□□□ 0.84
NPHP4-211ENST00000622020 TRAK1Q9UPV9 953 aa20.3■□□□□ 0.84
NPHP4-211ENST00000622020 IQGAP3Q86VI3 1631 aa20.3■□□□□ 0.84
NPHP4-211ENST00000622020 POGKQ9P215 609 aa20.29■□□□□ 0.84
NPHP4-211ENST00000622020 USP19O94966 1318 aa20.29■□□□□ 0.84
NPHP4-211ENST00000622020 DUOX2Q9NRD8 1548 aa20.29■□□□□ 0.84
NPHP4-211ENST00000622020 SLC12A5Q9H2X9 1139 aa20.28■□□□□ 0.84
NPHP4-211ENST00000622020 RLBP1P12271 317 aa20.28■□□□□ 0.84
NPHP4-211ENST00000622020 MORC1Q86VD1 984 aa20.28■□□□□ 0.84
NPHP4-211ENST00000622020 MAST1Q9Y2H9 1570 aa20.26■□□□□ 0.83
NPHP4-211ENST00000622020 PIK3C2GO75747 1445 aa20.26■□□□□ 0.83
NPHP4-211ENST00000622020 NUTM2DQ5VT03 806 aaPredicted RBP20.26■□□□□ 0.83
NPHP4-211ENST00000622020 PCDHB15Q9Y5E8 787 aa20.26■□□□□ 0.83
NPHP4-211ENST00000622020 ERCC6L2Q5T890 1561 aa20.26■□□□□ 0.83
NPHP4-211ENST00000622020 LAMC1P11047 1609 aa20.26■□□□□ 0.83
NPHP4-211ENST00000622020 EIF3AQ14152 1382 aaKnown RBP20.25■□□□□ 0.83
NPHP4-211ENST00000622020 TCP11L2Q8N4U5 519 aa20.25■□□□□ 0.83
NPHP4-211ENST00000622020 TMEM132EQ6IEE7 984 aa20.25■□□□□ 0.83
NPHP4-211ENST00000622020 CGNL1Q0VF96 1302 aa20.25■□□□□ 0.83
NPHP4-211ENST00000622020 ATP10AO60312 1499 aa20.24■□□□□ 0.83
NPHP4-211ENST00000622020 MADDQ8WXG6 1647 aa20.23■□□□□ 0.83
NPHP4-211ENST00000622020 PDE3AQ14432 1141 aa20.22■□□□□ 0.83
NPHP4-211ENST00000622020 RARSP54136 660 aaKnown RBP20.21■□□□□ 0.83
NPHP4-211ENST00000622020 SAFB2Q14151 953 aaKnown RBP eCLIP20.21■□□□□ 0.83
NPHP4-211ENST00000622020 UGGT1Q9NYU2 1555 aa20.21■□□□□ 0.83
NPHP4-211ENST00000622020 PLCH2O75038 1416 aa20.2■□□□□ 0.82
NPHP4-211ENST00000622020 MTHFSP49914 203 aa20.2■□□□□ 0.82
NPHP4-211ENST00000622020 PDZRN3Q9UPQ7 1066 aa20.2■□□□□ 0.82
NPHP4-211ENST00000622020 RNF17Q9BXT8 1623 aaKnown RBP20.2■□□□□ 0.82
NPHP4-211ENST00000622020 SYNMO15061 1565 aa20.19■□□□□ 0.82
NPHP4-211ENST00000622020 PLXNC1O60486 1568 aa20.18■□□□□ 0.82
NPHP4-211ENST00000622020 BECN1Q14457 450 aa20.18■□□□□ 0.82
NPHP4-211ENST00000622020 GZF1Q9H116 711 aaPredicted RBP20.18■□□□□ 0.82
NPHP4-211ENST00000622020 MAPK8IP3Q9UPT6 1336 aa20.17■□□□□ 0.82
NPHP4-211ENST00000622020 ERVK-7P63135 1459 aa20.17■□□□□ 0.82
NPHP4-211ENST00000622020 TSR2Q969E8 191 aaKnown RBP20.16■□□□□ 0.82
NPHP4-211ENST00000622020 IQGAP1P46940 1657 aa20.16■□□□□ 0.82
NPHP4-211ENST00000622020 U2AF1L5P0DN76 240 aaPredicted RBP20.16■□□□□ 0.82
NPHP4-211ENST00000622020 U2AF1Q01081 240 aaKnown RBP eCLIP20.16■□□□□ 0.82
NPHP4-211ENST00000622020 RUNDC1Q96C34 613 aa20.16■□□□□ 0.82
NPHP4-211ENST00000622020 NSD3Q9BZ95 1437 aa20.16■□□□□ 0.82
NPHP4-211ENST00000622020 UPF2Q9HAU5 1272 aaKnown RBP20.16■□□□□ 0.82
NPHP4-211ENST00000622020 CLTCL1P53675 1640 aa20.15■□□□□ 0.82
NPHP4-211ENST00000622020 SCAPERQ9BY12 1400 aa20.15■□□□□ 0.82
NPHP4-211ENST00000622020 KANK1Q14678 1352 aa20.14■□□□□ 0.82
NPHP4-211ENST00000622020 NPC1L1Q9UHC9 1359 aa20.13■□□□□ 0.81
NPHP4-211ENST00000622020 TBC1D2Q9BYX2 928 aa20.13■□□□□ 0.81
NPHP4-211ENST00000622020 MFAP1P55081 439 aaKnown RBP20.13■□□□□ 0.81
NPHP4-211ENST00000622020 MYOM1P52179 1685 aa20.13■□□□□ 0.81
NPHP4-211ENST00000622020 FTSJ3Q8IY81 847 aaKnown RBP20.12■□□□□ 0.81
NPHP4-211ENST00000622020 PMFBP1Q8TBY8 1022 aa20.12■□□□□ 0.81
NPHP4-211ENST00000622020 ABCC2Q92887 1545 aa20.12■□□□□ 0.81
NPHP4-211ENST00000622020 U2SURPO15042 1029 aaKnown RBP20.11■□□□□ 0.81
NPHP4-211ENST00000622020 GGT6Q6P531 493 aa20.11■□□□□ 0.81
NPHP4-211ENST00000622020 TRPM2O94759 1503 aa20.1■□□□□ 0.81
NPHP4-211ENST00000622020 CLASP1Q7Z460 1538 aa20.1■□□□□ 0.81
NPHP4-211ENST00000622020 KDM5AP29375 1690 aaKnown RBP20.09■□□□□ 0.81
NPHP4-211ENST00000622020 PTPRTO14522 1441 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms