RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 SOCS7O14512 581 aa17.77■□□□□ 0.44
CPNE3-210ENST00000621245 PPARGC1BQ86YN6 1023 aaKnown RBP17.77■□□□□ 0.44
CPNE3-210ENST00000621245 TMEM2Q9UHN6 1383 aa17.76■□□□□ 0.43
CPNE3-210ENST00000621245 HSPA1LP34931 641 aa17.75■□□□□ 0.43
CPNE3-210ENST00000621245 IDI1Q13907 227 aa17.75■□□□□ 0.43
CPNE3-210ENST00000621245 TXNDC2Q86VQ3 553 aa17.75■□□□□ 0.43
CPNE3-210ENST00000621245 IQGAP3Q86VI3 1631 aa17.74■□□□□ 0.43
CPNE3-210ENST00000621245 TMEM131LA2VDJ0 1609 aa17.73■□□□□ 0.43
CPNE3-210ENST00000621245 MED1Q15648 1581 aaPredicted RBP17.73■□□□□ 0.43
CPNE3-210ENST00000621245 RPRD2Q5VT52 1461 aaKnown RBP17.7■□□□□ 0.42
CPNE3-210ENST00000621245 NWD1Q149M9 1564 aa17.69■□□□□ 0.42
CPNE3-210ENST00000621245 TOM1O60784 492 aa17.68■□□□□ 0.42
CPNE3-210ENST00000621245 ZFYVE9O95405 1425 aa17.68■□□□□ 0.42
CPNE3-210ENST00000621245 ROCK1Q13464 1354 aa17.67■□□□□ 0.42
CPNE3-210ENST00000621245 STAG3Q9UJ98 1225 aa17.67■□□□□ 0.42
CPNE3-210ENST00000621245 CHD2O14647 1828 aaKnown RBP17.67■□□□□ 0.42
CPNE3-210ENST00000621245 ITGAEP38570 1179 aa17.66■□□□□ 0.42
CPNE3-210ENST00000621245 EID1Q9Y6B2 187 aa17.66■□□□□ 0.42
CPNE3-210ENST00000621245 SLC26A8Q96RN1 970 aa17.65■□□□□ 0.42
CPNE3-210ENST00000621245 SPHKAPQ2M3C7 1700 aa17.64■□□□□ 0.41
CPNE3-210ENST00000621245 RBM33Q96EV2 1170 aaKnown RBP17.63■□□□□ 0.41
CPNE3-210ENST00000621245 RIMS2Q9UQ26 1411 aa17.62■□□□□ 0.41
CPNE3-210ENST00000621245 SLC52A1Q9NWF4 448 aa17.61■□□□□ 0.41
CPNE3-210ENST00000621245 TMEM94Q12767 1356 aa17.61■□□□□ 0.41
CPNE3-210ENST00000621245 ROBO1Q9Y6N7 1651 aa17.61■□□□□ 0.41
CPNE3-210ENST00000621245 NKTRP30414 1462 aaKnown RBP17.58■□□□□ 0.41
CPNE3-210ENST00000621245 NUP155O75694 1391 aa17.58■□□□□ 0.4
CPNE3-210ENST00000621245 PLEKHG1Q9ULL1 1385 aa17.58■□□□□ 0.4
CPNE3-210ENST00000621245 NRXN3Q9Y4C0 1643 aa17.58■□□□□ 0.4
CPNE3-210ENST00000621245 NUTM2DQ5VT03 806 aaPredicted RBP17.57■□□□□ 0.4
CPNE3-210ENST00000621245 RRBP1Q9P2E9 1410 aaKnown RBP17.56■□□□□ 0.4
CPNE3-210ENST00000621245 KCNA6P17658 529 aa17.56■□□□□ 0.4
CPNE3-210ENST00000621245 CLTCL1P53675 1640 aa17.56■□□□□ 0.4
CPNE3-210ENST00000621245 ADAMTS13Q76LX8 1427 aa17.55■□□□□ 0.4
CPNE3-210ENST00000621245 CHGAP10645 457 aaKnown RBP17.54■□□□□ 0.4
CPNE3-210ENST00000621245 PROSER2Q86WR7 435 aaPredicted RBP17.52■□□□□ 0.4
CPNE3-210ENST00000621245 BCANQ96GW7 911 aa17.52■□□□□ 0.4
CPNE3-210ENST00000621245 NAIPQ13075 1403 aa17.52■□□□□ 0.4
CPNE3-210ENST00000621245 DIP2AQ14689 1571 aa17.52■□□□□ 0.39
CPNE3-210ENST00000621245 HOXD11P31277 338 aaPredicted RBP17.51■□□□□ 0.39
CPNE3-210ENST00000621245 PHLPP1O60346 1717 aa17.5■□□□□ 0.39
CPNE3-210ENST00000621245 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.5■□□□□ 0.39
CPNE3-210ENST00000621245 PPP1R15AO75807 674 aaPredicted RBP17.5■□□□□ 0.39
CPNE3-210ENST00000621245 XRN1Q8IZH2 1706 aaKnown RBP17.5■□□□□ 0.39
CPNE3-210ENST00000621245 FAM135BQ49AJ0 1406 aa17.49■□□□□ 0.39
CPNE3-210ENST00000621245 PTPRUQ92729 1446 aa17.49■□□□□ 0.39
CPNE3-210ENST00000621245 KIF1BO60333 1816 aa17.49■□□□□ 0.39
CPNE3-210ENST00000621245 TRPM2O94759 1503 aa17.48■□□□□ 0.39
CPNE3-210ENST00000621245 NEXMIFQ5QGS0 1516 aa17.47■□□□□ 0.39
CPNE3-210ENST00000621245 SETBP1Q9Y6X0 1596 aa17.47■□□□□ 0.39
CPNE3-210ENST00000621245 SETD1AO15047 1707 aaKnown RBP17.45■□□□□ 0.38
CPNE3-210ENST00000621245 COL16A1Q07092 1604 aaPredicted RBP17.45■□□□□ 0.38
CPNE3-210ENST00000621245 MSH6P52701 1360 aa17.44■□□□□ 0.38
CPNE3-210ENST00000621245 TBX22Q9Y458 520 aa17.44■□□□□ 0.38
CPNE3-210ENST00000621245 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.42■□□□□ 0.38
CPNE3-210ENST00000621245 RGS17Q9UGC6 210 aaPredicted RBP17.42■□□□□ 0.38
CPNE3-210ENST00000621245 NALCNQ8IZF0 1738 aa17.41■□□□□ 0.38
CPNE3-210ENST00000621245 HFM1A2PYH4 1435 aa17.41■□□□□ 0.38
CPNE3-210ENST00000621245 PPLO60437 1756 aa17.39■□□□□ 0.37
CPNE3-210ENST00000621245 METP08581 1390 aa17.39■□□□□ 0.37
CPNE3-210ENST00000621245 PIK3R4Q99570 1358 aa17.39■□□□□ 0.37
CPNE3-210ENST00000621245 HDGFP51858 240 aaKnown RBP17.38■□□□□ 0.37
CPNE3-210ENST00000621245 SLAIN2Q9P270 581 aa17.38■□□□□ 0.37
CPNE3-210ENST00000621245 SLC4A2P04920 1241 aa17.37■□□□□ 0.37
CPNE3-210ENST00000621245 AHDC1Q5TGY3 1603 aaPredicted RBP17.36■□□□□ 0.37
CPNE3-210ENST00000621245 ZNF326Q5BKZ1 582 aaKnown RBP17.36■□□□□ 0.37
CPNE3-210ENST00000621245 AMOTL2Q9Y2J4 779 aa17.36■□□□□ 0.37
CPNE3-210ENST00000621245 NCOA3Q9Y6Q9 1424 aa17.35■□□□□ 0.37
CPNE3-210ENST00000621245 LRP6O75581 1613 aa17.35■□□□□ 0.37
CPNE3-210ENST00000621245 SHPRHQ149N8 1683 aa17.35■□□□□ 0.37
CPNE3-210ENST00000621245 NHSL1Q5SYE7 1610 aa17.34■□□□□ 0.37
CPNE3-210ENST00000621245 IFT172Q9UG01 1749 aa17.33■□□□□ 0.37
CPNE3-210ENST00000621245 C14orf37Q86TY3 774 aa17.33■□□□□ 0.36
CPNE3-210ENST00000621245 TRIM52Q96A61 297 aa17.32■□□□□ 0.36
CPNE3-210ENST00000621245 ASXL1Q8IXJ9 1541 aa17.31■□□□□ 0.36
CPNE3-210ENST00000621245 MST1RQ04912 1400 aa17.3■□□□□ 0.36
CPNE3-210ENST00000621245 POTEAQ6S8J7 498 aa17.3■□□□□ 0.36
CPNE3-210ENST00000621245 C19orf44Q9H6X5 657 aa17.29■□□□□ 0.36
CPNE3-210ENST00000621245 JCADQ9P266 1359 aa17.28■□□□□ 0.36
CPNE3-210ENST00000621245 DCCP43146 1447 aa17.28■□□□□ 0.36
CPNE3-210ENST00000621245 ATF3P18847 181 aa17.27■□□□□ 0.36
CPNE3-210ENST00000621245 BRINP3Q76B58 766 aa17.27■□□□□ 0.36
CPNE3-210ENST00000621245 ADGRL3Q9HAR2 1447 aa17.27■□□□□ 0.35
CPNE3-210ENST00000621245 CADPS2Q86UW7 1296 aa17.26■□□□□ 0.35
CPNE3-210ENST00000621245 ROBO2Q9HCK4 1378 aa17.25■□□□□ 0.35
CPNE3-210ENST00000621245 PTCH1Q13635 1447 aa17.23■□□□□ 0.35
CPNE3-210ENST00000621245 DDX17Q92841 729 aaKnown RBP17.23■□□□□ 0.35
CPNE3-210ENST00000621245 SPATA31E1Q6ZUB1 1445 aa17.21■□□□□ 0.35
CPNE3-210ENST00000621245 LAMC1P11047 1609 aa17.21■□□□□ 0.35
CPNE3-210ENST00000621245 PRAG1Q86YV5 1406 aa17.21■□□□□ 0.34
CPNE3-210ENST00000621245 KNDC1Q76NI1 1749 aa17.19■□□□□ 0.34
CPNE3-210ENST00000621245 ADGRF5Q8IZF2 1346 aa17.19■□□□□ 0.34
CPNE3-210ENST00000621245 C1orf167Q5SNV9 1468 aa17.18■□□□□ 0.34
CPNE3-210ENST00000621245 CCDC144AA2RUR9 1427 aa17.17■□□□□ 0.34
CPNE3-210ENST00000621245 SETD5Q9C0A6 1442 aa17.17■□□□□ 0.34
CPNE3-210ENST00000621245 SPATA31A6Q5VVP1 1343 aa17.17■□□□□ 0.34
CPNE3-210ENST00000621245 VGFO15240 615 aaPredicted RBP17.16■□□□□ 0.34
CPNE3-210ENST00000621245 MPHOSPH9Q99550 1183 aa17.16■□□□□ 0.34
CPNE3-210ENST00000621245 RPGRIP1LQ68CZ1 1315 aa17.16■□□□□ 0.34
CPNE3-210ENST00000621245 CDC42BPGQ6DT37 1551 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms