RNA–Protein interactions for RNA: ENST00000620675.4

NEK3-210, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-210ENST00000620675 TMEM2Q9UHN6 1383 aa19.89■□□□□ 0.77
NEK3-210ENST00000620675 LTKP29376 864 aa19.88■□□□□ 0.77
NEK3-210ENST00000620675 POLR1AO95602 1720 aaPredicted RBP19.88■□□□□ 0.77
NEK3-210ENST00000620675 ZFYVE9O95405 1425 aa19.87■□□□□ 0.77
NEK3-210ENST00000620675 NCKAP5LQ9HCH0 1330 aa19.87■□□□□ 0.77
NEK3-210ENST00000620675 RIMS2Q9UQ26 1411 aa19.86■□□□□ 0.77
NEK3-210ENST00000620675 NEURL4Q96JN8 1562 aa19.85■□□□□ 0.77
NEK3-210ENST00000620675 TXNDC2Q86VQ3 553 aa19.82■□□□□ 0.76
NEK3-210ENST00000620675 SCAF11Q99590 1463 aaKnown RBP19.81■□□□□ 0.76
NEK3-210ENST00000620675 L3MBTL2Q969R5 705 aa19.8■□□□□ 0.76
NEK3-210ENST00000620675 ANKLE2Q86XL3 938 aa19.79■□□□□ 0.76
NEK3-210ENST00000620675 KDM2AQ9Y2K7 1162 aa19.79■□□□□ 0.76
NEK3-210ENST00000620675 IQGAP1P46940 1657 aa19.78■□□□□ 0.76
NEK3-210ENST00000620675 ADGRF5Q8IZF2 1346 aa19.78■□□□□ 0.76
NEK3-210ENST00000620675 CLSPNQ9HAW4 1339 aa19.78■□□□□ 0.76
NEK3-210ENST00000620675 NRXN3Q9Y4C0 1643 aa19.78■□□□□ 0.76
NEK3-210ENST00000620675 DCAF11Q8TEB1 546 aa19.78■□□□□ 0.76
NEK3-210ENST00000620675 EID1Q9Y6B2 187 aa19.77■□□□□ 0.75
NEK3-210ENST00000620675 PPP1R15AO75807 674 aaPredicted RBP19.76■□□□□ 0.75
NEK3-210ENST00000620675 RPGRIP1LQ68CZ1 1315 aa19.75■□□□□ 0.75
NEK3-210ENST00000620675 MED14O60244 1454 aa19.75■□□□□ 0.75
NEK3-210ENST00000620675 NPHP4O75161 1426 aaPredicted RBP19.74■□□□□ 0.75
NEK3-210ENST00000620675 TONSLQ96HA7 1378 aa19.73■□□□□ 0.75
NEK3-210ENST00000620675 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.72■□□□□ 0.75
NEK3-210ENST00000620675 SLC26A8Q96RN1 970 aa19.72■□□□□ 0.75
NEK3-210ENST00000620675 SETD1AO15047 1707 aaKnown RBP19.72■□□□□ 0.75
NEK3-210ENST00000620675 PLEKHG1Q9ULL1 1385 aa19.72■□□□□ 0.75
NEK3-210ENST00000620675 MYOM2P54296 1465 aa19.72■□□□□ 0.75
NEK3-210ENST00000620675 NRXN1Q9ULB1 1477 aa19.71■□□□□ 0.75
NEK3-210ENST00000620675 ADAMTS13Q76LX8 1427 aa19.71■□□□□ 0.75
NEK3-210ENST00000620675 VGFO15240 615 aaPredicted RBP19.71■□□□□ 0.75
NEK3-210ENST00000620675 BCANQ96GW7 911 aa19.7■□□□□ 0.74
NEK3-210ENST00000620675 SETBP1Q9Y6X0 1596 aa19.7■□□□□ 0.74
NEK3-210ENST00000620675 HDGFP51858 240 aaKnown RBP19.69■□□□□ 0.74
NEK3-210ENST00000620675 PIK3C2GO75747 1445 aa19.69■□□□□ 0.74
NEK3-210ENST00000620675 ALKQ9UM73 1620 aa19.68■□□□□ 0.74
NEK3-210ENST00000620675 STRCP1A6NGW2 1772 aa19.67■□□□□ 0.74
NEK3-210ENST00000620675 NBPF8Q3BBV2 869 aa19.66■□□□□ 0.74
NEK3-210ENST00000620675 PRAG1Q86YV5 1406 aa19.66■□□□□ 0.74
NEK3-210ENST00000620675 CFAP70Q5T0N1 1121 aa19.65■□□□□ 0.74
NEK3-210ENST00000620675 ASXL1Q8IXJ9 1541 aa19.64■□□□□ 0.74
NEK3-210ENST00000620675 METP08581 1390 aa19.64■□□□□ 0.73
NEK3-210ENST00000620675 CHD2O14647 1828 aaKnown RBP19.63■□□□□ 0.73
NEK3-210ENST00000620675 TMEM132EQ6IEE7 984 aa19.62■□□□□ 0.73
NEK3-210ENST00000620675 TRPM1Q7Z4N2 1603 aa19.62■□□□□ 0.73
NEK3-210ENST00000620675 PTPRUQ92729 1446 aa19.61■□□□□ 0.73
NEK3-210ENST00000620675 DIP2AQ14689 1571 aa19.6■□□□□ 0.73
NEK3-210ENST00000620675 NBPF1Q3BBV0 1214 aa19.6■□□□□ 0.73
NEK3-210ENST00000620675 C14orf93Q9H972 538 aaKnown RBP19.6■□□□□ 0.73
NEK3-210ENST00000620675 TBX22Q9Y458 520 aa19.6■□□□□ 0.73
NEK3-210ENST00000620675 ZNF335Q9H4Z2 1342 aaPredicted RBP19.6■□□□□ 0.73
NEK3-210ENST00000620675 DMRT2Q9Y5R5 561 aa19.59■□□□□ 0.73
NEK3-210ENST00000620675 LAMC1P11047 1609 aa19.59■□□□□ 0.73
NEK3-210ENST00000620675 KIAA1210Q9ULL0 1709 aa19.58■□□□□ 0.73
NEK3-210ENST00000620675 ADGRB1O14514 1584 aa19.58■□□□□ 0.72
NEK3-210ENST00000620675 STAC3Q96MF2 364 aa19.58■□□□□ 0.72
NEK3-210ENST00000620675 TIMELESSQ9UNS1 1208 aa19.56■□□□□ 0.72
NEK3-210ENST00000620675 XRN1Q8IZH2 1706 aaKnown RBP19.55■□□□□ 0.72
NEK3-210ENST00000620675 STK26Q9P289 416 aa19.53■□□□□ 0.72
NEK3-210ENST00000620675 NWD1Q149M9 1564 aa19.53■□□□□ 0.72
NEK3-210ENST00000620675 KCNA6P17658 529 aa19.52■□□□□ 0.72
NEK3-210ENST00000620675 RBM33Q96EV2 1170 aaKnown RBP19.52■□□□□ 0.72
NEK3-210ENST00000620675 XIRP1Q702N8 1843 aaKnown RBP19.52■□□□□ 0.72
NEK3-210ENST00000620675 AMOTL2Q9Y2J4 779 aa19.52■□□□□ 0.71
NEK3-210ENST00000620675 LTBP4Q8N2S1 1624 aa19.51■□□□□ 0.71
NEK3-210ENST00000620675 RALGAPBQ86X10 1494 aa19.51■□□□□ 0.71
NEK3-210ENST00000620675 YTHDC2Q9H6S0 1430 aaKnown RBP19.51■□□□□ 0.71
NEK3-210ENST00000620675 PIK3R4Q99570 1358 aa19.49■□□□□ 0.71
NEK3-210ENST00000620675 KNDC1Q76NI1 1749 aa19.49■□□□□ 0.71
NEK3-210ENST00000620675 ROCK2O75116 1388 aaKnown RBP19.49■□□□□ 0.71
NEK3-210ENST00000620675 ARHGEF28Q8N1W1 1705 aaKnown RBP19.48■□□□□ 0.71
NEK3-210ENST00000620675 LRPPRCP42704 1394 aaKnown RBP19.47■□□□□ 0.71
NEK3-210ENST00000620675 ROBO2Q9HCK4 1378 aa19.47■□□□□ 0.71
NEK3-210ENST00000620675 TRAK1Q9UPV9 953 aa19.47■□□□□ 0.71
NEK3-210ENST00000620675 GPRASP1Q5JY77 1395 aa19.45■□□□□ 0.7
NEK3-210ENST00000620675 PLEKHH1Q9ULM0 1364 aa19.45■□□□□ 0.7
NEK3-210ENST00000620675 WAPLQ7Z5K2 1190 aa19.45■□□□□ 0.7
NEK3-210ENST00000620675 CPS1P31327 1500 aa19.44■□□□□ 0.7
NEK3-210ENST00000620675 ABCC11Q96J66 1382 aa19.44■□□□□ 0.7
NEK3-210ENST00000620675 LRRC7Q96NW7 1537 aa19.44■□□□□ 0.7
NEK3-210ENST00000620675 TECPR2O15040 1411 aa19.43■□□□□ 0.7
NEK3-210ENST00000620675 NKTRP30414 1462 aaKnown RBP19.43■□□□□ 0.7
NEK3-210ENST00000620675 CARD11Q9BXL7 1154 aa19.43■□□□□ 0.7
NEK3-210ENST00000620675 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.42■□□□□ 0.7
NEK3-210ENST00000620675 SAFB2Q14151 953 aaKnown RBP eCLIP19.42■□□□□ 0.7
NEK3-210ENST00000620675 PROSER2Q86WR7 435 aaPredicted RBP19.42■□□□□ 0.7
NEK3-210ENST00000620675 PTCH1Q13635 1447 aa19.41■□□□□ 0.7
NEK3-210ENST00000620675 NALCNQ8IZF0 1738 aa19.41■□□□□ 0.7
NEK3-210ENST00000620675 TMEM94Q12767 1356 aa19.41■□□□□ 0.7
NEK3-210ENST00000620675 PRAM1Q96QH2 718 aa19.4■□□□□ 0.7
NEK3-210ENST00000620675 DLC1Q96QB1 1528 aa19.39■□□□□ 0.7
NEK3-210ENST00000620675 QRICH2Q9H0J4 1663 aa19.37■□□□□ 0.69
NEK3-210ENST00000620675 FAM135BQ49AJ0 1406 aa19.35■□□□□ 0.69
NEK3-210ENST00000620675 USP47Q96K76 1375 aa19.34■□□□□ 0.69
NEK3-210ENST00000620675 HIRIP3Q9BW71 556 aaPredicted RBP19.34■□□□□ 0.69
NEK3-210ENST00000620675 POGKQ9P215 609 aa19.34■□□□□ 0.69
NEK3-210ENST00000620675 MINK1Q8N4C8 1332 aaPredicted RBP19.32■□□□□ 0.68
NEK3-210ENST00000620675 SIRT1Q96EB6 747 aa19.32■□□□□ 0.68
NEK3-210ENST00000620675 ST20-MTHFSA0A0A6YYL1 179 aa19.31■□□□□ 0.68
NEK3-210ENST00000620675 C14orf37Q86TY3 774 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms