RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ZNF326Q5BKZ1 582 aaKnown RBP8.53□□□□□ -1.04
CPNE3-208ENST00000614678 RPRD2Q5VT52 1461 aaKnown RBP8.53□□□□□ -1.04
CPNE3-208ENST00000614678 SLC52A1Q9NWF4 448 aa8.53□□□□□ -1.04
CPNE3-208ENST00000614678 RIMS2Q9UQ26 1411 aa8.53□□□□□ -1.04
CPNE3-208ENST00000614678 MED14O60244 1454 aa8.52□□□□□ -1.05
CPNE3-208ENST00000614678 PIP4K2BP78356 416 aa8.52□□□□□ -1.05
CPNE3-208ENST00000614678 FBXO41Q8TF61 875 aa8.51□□□□□ -1.05
CPNE3-208ENST00000614678 ALKQ9UM73 1620 aa8.51□□□□□ -1.05
CPNE3-208ENST00000614678 EID1Q9Y6B2 187 aa8.51□□□□□ -1.05
CPNE3-208ENST00000614678 PPP1R15AO75807 674 aaPredicted RBP8.5□□□□□ -1.05
CPNE3-208ENST00000614678 SCAF1Q9H7N4 1312 aaKnown RBP8.5□□□□□ -1.05
CPNE3-208ENST00000614678 XIRP1Q702N8 1843 aaKnown RBP8.5□□□□□ -1.05
CPNE3-208ENST00000614678 ADAMTS13Q76LX8 1427 aa8.5□□□□□ -1.05
CPNE3-208ENST00000614678 TRPM2O94759 1503 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 UBAP1LF5GYI3 381 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 KCNA6P17658 529 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 PTPRUQ92729 1446 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 ADGRF5Q8IZF2 1346 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 LRRC7Q96NW7 1537 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 METP08581 1390 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 NRXN3Q9Y4C0 1643 aa8.49□□□□□ -1.05
CPNE3-208ENST00000614678 NEXMIFQ5QGS0 1516 aa8.47□□□□□ -1.05
CPNE3-208ENST00000614678 TMEM132EQ6IEE7 984 aa8.46□□□□□ -1.05
CPNE3-208ENST00000614678 TMEM94Q12767 1356 aa8.46□□□□□ -1.05
CPNE3-208ENST00000614678 SIN3AQ96ST3 1273 aa8.46□□□□□ -1.06
CPNE3-208ENST00000614678 KDM5AP29375 1690 aaKnown RBP8.46□□□□□ -1.06
CPNE3-208ENST00000614678 PLEKHG1Q9ULL1 1385 aa8.46□□□□□ -1.06
CPNE3-208ENST00000614678 KIF1BO60333 1816 aa8.46□□□□□ -1.06
CPNE3-208ENST00000614678 KDM2AQ9Y2K7 1162 aa8.45□□□□□ -1.06
CPNE3-208ENST00000614678 PROSER2Q86WR7 435 aaPredicted RBP8.45□□□□□ -1.06
CPNE3-208ENST00000614678 CCDC144AA2RUR9 1427 aa8.45□□□□□ -1.06
CPNE3-208ENST00000614678 SPATA31E1Q6ZUB1 1445 aa8.45□□□□□ -1.06
CPNE3-208ENST00000614678 AMOTL2Q9Y2J4 779 aa8.44□□□□□ -1.06
CPNE3-208ENST00000614678 ANKRD30BQ9BXX2 1392 aa8.44□□□□□ -1.06
CPNE3-208ENST00000614678 HSPA1LP34931 641 aa8.44□□□□□ -1.06
CPNE3-208ENST00000614678 CHD2O14647 1828 aaKnown RBP8.44□□□□□ -1.06
CPNE3-208ENST00000614678 STK26Q9P289 416 aa8.43□□□□□ -1.06
CPNE3-208ENST00000614678 DDX17Q92841 729 aaKnown RBP8.43□□□□□ -1.06
CPNE3-208ENST00000614678 PPLO60437 1756 aa8.43□□□□□ -1.06
CPNE3-208ENST00000614678 CFAP70Q5T0N1 1121 aa8.42□□□□□ -1.06
CPNE3-208ENST00000614678 PCGF6Q9BYE7 350 aa8.42□□□□□ -1.06
CPNE3-208ENST00000614678 WAPLQ7Z5K2 1190 aa8.42□□□□□ -1.06
CPNE3-208ENST00000614678 TBX22Q9Y458 520 aa8.42□□□□□ -1.06
CPNE3-208ENST00000614678 NUTM2FA1L443 756 aa8.41□□□□□ -1.06
CPNE3-208ENST00000614678 SETD1AO15047 1707 aaKnown RBP8.41□□□□□ -1.06
CPNE3-208ENST00000614678 NEUROD1Q13562 356 aa8.41□□□□□ -1.06
CPNE3-208ENST00000614678 CPS1P31327 1500 aa8.41□□□□□ -1.06
CPNE3-208ENST00000614678 ROBO2Q9HCK4 1378 aa8.41□□□□□ -1.06
CPNE3-208ENST00000614678 SAFB2Q14151 953 aaKnown RBP eCLIP8.4□□□□□ -1.06
CPNE3-208ENST00000614678 DCAF11Q8TEB1 546 aa8.4□□□□□ -1.06
CPNE3-208ENST00000614678 PLEKHH1Q9ULM0 1364 aa8.4□□□□□ -1.06
CPNE3-208ENST00000614678 ASXL1Q8IXJ9 1541 aa8.4□□□□□ -1.06
CPNE3-208ENST00000614678 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.4□□□□□ -1.06
CPNE3-208ENST00000614678 DHX57Q6P158 1386 aaKnown RBP8.4□□□□□ -1.06
CPNE3-208ENST00000614678 SETBP1Q9Y6X0 1596 aa8.39□□□□□ -1.07
CPNE3-208ENST00000614678 IFT172Q9UG01 1749 aa8.39□□□□□ -1.07
CPNE3-208ENST00000614678 TRIM26Q12899 539 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-208ENST00000614678 C14orf37Q86TY3 774 aa8.39□□□□□ -1.07
CPNE3-208ENST00000614678 NWD1Q149M9 1564 aa8.39□□□□□ -1.07
CPNE3-208ENST00000614678 VGFO15240 615 aaPredicted RBP8.37□□□□□ -1.07
CPNE3-208ENST00000614678 TOM1O60784 492 aa8.37□□□□□ -1.07
CPNE3-208ENST00000614678 SRCAPQ6ZRS2 3230 aa8.37□□□□□ -1.07
CPNE3-208ENST00000614678 HDGFP51858 240 aaKnown RBP8.37□□□□□ -1.07
CPNE3-208ENST00000614678 XRN1Q8IZH2 1706 aaKnown RBP8.37□□□□□ -1.07
CPNE3-208ENST00000614678 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.37□□□□□ -1.07
CPNE3-208ENST00000614678 NBPF1Q3BBV0 1214 aa8.37□□□□□ -1.07
CPNE3-208ENST00000614678 PIK3C2GO75747 1445 aa8.36□□□□□ -1.07
CPNE3-208ENST00000614678 HIRIP3Q9BW71 556 aaPredicted RBP8.36□□□□□ -1.07
CPNE3-208ENST00000614678 SLAIN2Q9P270 581 aa8.36□□□□□ -1.07
CPNE3-208ENST00000614678 NALCNQ8IZF0 1738 aa8.36□□□□□ -1.07
CPNE3-208ENST00000614678 ROBO1Q9Y6N7 1651 aa8.35□□□□□ -1.07
CPNE3-208ENST00000614678 ORAI2Q96SN7 254 aa8.35□□□□□ -1.07
CPNE3-208ENST00000614678 ILDR2Q71H61 639 aa8.35□□□□□ -1.07
CPNE3-208ENST00000614678 L3MBTL2Q969R5 705 aa8.35□□□□□ -1.07
CPNE3-208ENST00000614678 TRAK1Q9UPV9 953 aa8.35□□□□□ -1.07
CPNE3-208ENST00000614678 XPCQ01831 940 aaPredicted RBP8.34□□□□□ -1.07
CPNE3-208ENST00000614678 NKTRP30414 1462 aaKnown RBP8.34□□□□□ -1.07
CPNE3-208ENST00000614678 HRCP23327 699 aa8.34□□□□□ -1.07
CPNE3-208ENST00000614678 IQSEC2Q5JU85 1478 aa8.34□□□□□ -1.07
CPNE3-208ENST00000614678 MSH6P52701 1360 aa8.34□□□□□ -1.07
CPNE3-208ENST00000614678 C14orf93Q9H972 538 aaKnown RBP8.34□□□□□ -1.08
CPNE3-208ENST00000614678 RPGRIP1LQ68CZ1 1315 aa8.33□□□□□ -1.08
CPNE3-208ENST00000614678 PLEKHG5O94827 1062 aa8.33□□□□□ -1.08
CPNE3-208ENST00000614678 BRINP3Q76B58 766 aa8.33□□□□□ -1.08
CPNE3-208ENST00000614678 C19orf44Q9H6X5 657 aa8.33□□□□□ -1.08
CPNE3-208ENST00000614678 DIP2AQ14689 1571 aa8.33□□□□□ -1.08
CPNE3-208ENST00000614678 NBPF8Q3BBV2 869 aa8.32□□□□□ -1.08
CPNE3-208ENST00000614678 NRXN1Q9ULB1 1477 aa8.32□□□□□ -1.08
CPNE3-208ENST00000614678 PRAM1Q96QH2 718 aa8.32□□□□□ -1.08
CPNE3-208ENST00000614678 EP400Q96L91 3159 aa8.32□□□□□ -1.08
CPNE3-208ENST00000614678 YTHDC2Q9H6S0 1430 aaKnown RBP8.32□□□□□ -1.08
CPNE3-208ENST00000614678 ADGRB1O14514 1584 aa8.31□□□□□ -1.08
CPNE3-208ENST00000614678 MST1RQ04912 1400 aa8.31□□□□□ -1.08
CPNE3-208ENST00000614678 PIK3R4Q99570 1358 aa8.31□□□□□ -1.08
CPNE3-208ENST00000614678 ATF3P18847 181 aa8.31□□□□□ -1.08
CPNE3-208ENST00000614678 RGPD8O14715 1765 aaPredicted RBP8.31□□□□□ -1.08
CPNE3-208ENST00000614678 DISP3Q9P2K9 1392 aa8.31□□□□□ -1.08
CPNE3-208ENST00000614678 MINK1Q8N4C8 1332 aaPredicted RBP8.3□□□□□ -1.08
CPNE3-208ENST00000614678 ADGRL3Q9HAR2 1447 aa8.29□□□□□ -1.08
CPNE3-208ENST00000614678 MYOM2P54296 1465 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms