RNA–Protein interactions for RNA: ENST00000606066.1

CTSA-211, Transcript of cathepsin A, humanhuman

TSL 5

Gene CTSA, Length 603 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-211ENST00000606066 TMEM2Q9UHN6 1383 aa20.95■□□□□ 0.94
CTSA-211ENST00000606066 KDM5AP29375 1690 aaKnown RBP20.94■□□□□ 0.94
CTSA-211ENST00000606066 PCGF6Q9BYE7 350 aa20.94■□□□□ 0.94
CTSA-211ENST00000606066 UBR1Q8IWV7 1749 aa20.94■□□□□ 0.94
CTSA-211ENST00000606066 TXNDC2Q86VQ3 553 aa20.93■□□□□ 0.94
CTSA-211ENST00000606066 CCDC144AA2RUR9 1427 aa20.93■□□□□ 0.94
CTSA-211ENST00000606066 LTKP29376 864 aa20.92■□□□□ 0.94
CTSA-211ENST00000606066 SLIT1O75093 1534 aa20.91■□□□□ 0.94
CTSA-211ENST00000606066 ARHGAP23Q9P227 1491 aa20.91■□□□□ 0.94
CTSA-211ENST00000606066 LRRC7Q96NW7 1537 aa20.9■□□□□ 0.94
CTSA-211ENST00000606066 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.9■□□□□ 0.94
CTSA-211ENST00000606066 ZNF326Q5BKZ1 582 aaKnown RBP20.89■□□□□ 0.93
CTSA-211ENST00000606066 TMEM131LA2VDJ0 1609 aa20.89■□□□□ 0.93
CTSA-211ENST00000606066 SCAF11Q99590 1463 aaKnown RBP20.88■□□□□ 0.93
CTSA-211ENST00000606066 POLR1AO95602 1720 aaPredicted RBP20.87■□□□□ 0.93
CTSA-211ENST00000606066 ANKRD30BQ9BXX2 1392 aa20.87■□□□□ 0.93
CTSA-211ENST00000606066 CLTCL1P53675 1640 aa20.87■□□□□ 0.93
CTSA-211ENST00000606066 ALKQ9UM73 1620 aa20.87■□□□□ 0.93
CTSA-211ENST00000606066 PPP1R15AO75807 674 aaPredicted RBP20.86■□□□□ 0.93
CTSA-211ENST00000606066 PHF23Q9BUL5 403 aaPredicted RBP20.86■□□□□ 0.93
CTSA-211ENST00000606066 RIMS2Q9UQ26 1411 aa20.86■□□□□ 0.93
CTSA-211ENST00000606066 MED1Q15648 1581 aaPredicted RBP20.85■□□□□ 0.93
CTSA-211ENST00000606066 RPGRIP1LQ68CZ1 1315 aa20.83■□□□□ 0.93
CTSA-211ENST00000606066 ZFYVE9O95405 1425 aa20.83■□□□□ 0.93
CTSA-211ENST00000606066 BCANQ96GW7 911 aa20.81■□□□□ 0.92
CTSA-211ENST00000606066 IQGAP1P46940 1657 aa20.8■□□□□ 0.92
CTSA-211ENST00000606066 RGL3Q3MIN7 710 aa20.79■□□□□ 0.92
CTSA-211ENST00000606066 NUTM2DQ5VT03 806 aaPredicted RBP20.79■□□□□ 0.92
CTSA-211ENST00000606066 DHX57Q6P158 1386 aaKnown RBP20.79■□□□□ 0.92
CTSA-211ENST00000606066 KIF1BO60333 1816 aa20.78■□□□□ 0.92
CTSA-211ENST00000606066 PLEKHG1Q9ULL1 1385 aa20.78■□□□□ 0.92
CTSA-211ENST00000606066 VGFO15240 615 aaPredicted RBP20.78■□□□□ 0.92
CTSA-211ENST00000606066 KCNA6P17658 529 aa20.78■□□□□ 0.92
CTSA-211ENST00000606066 SPATA31E1Q6ZUB1 1445 aa20.78■□□□□ 0.92
CTSA-211ENST00000606066 FAM135BQ49AJ0 1406 aa20.77■□□□□ 0.91
CTSA-211ENST00000606066 RGS17Q9UGC6 210 aaPredicted RBP20.75■□□□□ 0.91
CTSA-211ENST00000606066 MYO5BQ9ULV0 1848 aa20.74■□□□□ 0.91
CTSA-211ENST00000606066 SENP3Q9H4L4 574 aaPredicted RBP20.74■□□□□ 0.91
CTSA-211ENST00000606066 SLC26A8Q96RN1 970 aa20.73■□□□□ 0.91
CTSA-211ENST00000606066 NEXMIFQ5QGS0 1516 aa20.73■□□□□ 0.91
CTSA-211ENST00000606066 TBX22Q9Y458 520 aa20.71■□□□□ 0.91
CTSA-211ENST00000606066 STRCP1A6NGW2 1772 aa20.71■□□□□ 0.91
CTSA-211ENST00000606066 TMEM94Q12767 1356 aa20.71■□□□□ 0.91
CTSA-211ENST00000606066 PROSER2Q86WR7 435 aaPredicted RBP20.69■□□□□ 0.9
CTSA-211ENST00000606066 STAC3Q96MF2 364 aa20.69■□□□□ 0.9
CTSA-211ENST00000606066 ADAMTS13Q76LX8 1427 aa20.65■□□□□ 0.9
CTSA-211ENST00000606066 NEUROD1Q13562 356 aa20.65■□□□□ 0.9
CTSA-211ENST00000606066 SIN3AQ96ST3 1273 aa20.65■□□□□ 0.9
CTSA-211ENST00000606066 ADGRF5Q8IZF2 1346 aa20.64■□□□□ 0.89
CTSA-211ENST00000606066 DCAF11Q8TEB1 546 aa20.64■□□□□ 0.89
CTSA-211ENST00000606066 SETBP1Q9Y6X0 1596 aa20.63■□□□□ 0.89
CTSA-211ENST00000606066 PIK3R4Q99570 1358 aa20.63■□□□□ 0.89
CTSA-211ENST00000606066 DIP2AQ14689 1571 aa20.63■□□□□ 0.89
CTSA-211ENST00000606066 SLAIN2Q9P270 581 aa20.61■□□□□ 0.89
CTSA-211ENST00000606066 KDM2AQ9Y2K7 1162 aa20.61■□□□□ 0.89
CTSA-211ENST00000606066 PPLO60437 1756 aa20.61■□□□□ 0.89
CTSA-211ENST00000606066 MYOM2P54296 1465 aa20.61■□□□□ 0.89
CTSA-211ENST00000606066 RBM33Q96EV2 1170 aaKnown RBP20.6■□□□□ 0.89
CTSA-211ENST00000606066 CLSPNQ9HAW4 1339 aa20.59■□□□□ 0.89
CTSA-211ENST00000606066 POTEAQ6S8J7 498 aa20.59■□□□□ 0.89
CTSA-211ENST00000606066 PIK3C2GO75747 1445 aa20.57■□□□□ 0.88
CTSA-211ENST00000606066 IFT172Q9UG01 1749 aa20.56■□□□□ 0.88
CTSA-211ENST00000606066 CCER1Q8TC90 406 aaPredicted RBP20.56■□□□□ 0.88
CTSA-211ENST00000606066 L3MBTL2Q969R5 705 aa20.56■□□□□ 0.88
CTSA-211ENST00000606066 AMOTL2Q9Y2J4 779 aa20.56■□□□□ 0.88
CTSA-211ENST00000606066 METP08581 1390 aa20.56■□□□□ 0.88
CTSA-211ENST00000606066 MSH6P52701 1360 aa20.56■□□□□ 0.88
CTSA-211ENST00000606066 NRXN3Q9Y4C0 1643 aa20.56■□□□□ 0.88
CTSA-211ENST00000606066 NRXN1Q9ULB1 1477 aa20.56■□□□□ 0.88
CTSA-211ENST00000606066 C14orf93Q9H972 538 aaKnown RBP20.55■□□□□ 0.88
CTSA-211ENST00000606066 NKTRP30414 1462 aaKnown RBP20.55■□□□□ 0.88
CTSA-211ENST00000606066 NCOA3Q9Y6Q9 1424 aa20.54■□□□□ 0.88
CTSA-211ENST00000606066 TONSLQ96HA7 1378 aa20.53■□□□□ 0.88
CTSA-211ENST00000606066 CFAP70Q5T0N1 1121 aa20.52■□□□□ 0.88
CTSA-211ENST00000606066 NWD1Q149M9 1564 aa20.51■□□□□ 0.87
CTSA-211ENST00000606066 JCADQ9P266 1359 aa20.5■□□□□ 0.87
CTSA-211ENST00000606066 PTPRUQ92729 1446 aa20.5■□□□□ 0.87
CTSA-211ENST00000606066 XIRP1Q702N8 1843 aaKnown RBP20.49■□□□□ 0.87
CTSA-211ENST00000606066 C19orf44Q9H6X5 657 aa20.48■□□□□ 0.87
CTSA-211ENST00000606066 TMEM132EQ6IEE7 984 aa20.47■□□□□ 0.87
CTSA-211ENST00000606066 CHD2O14647 1828 aaKnown RBP20.47■□□□□ 0.87
CTSA-211ENST00000606066 CADPS2Q86UW7 1296 aa20.46■□□□□ 0.87
CTSA-211ENST00000606066 TIMELESSQ9UNS1 1208 aa20.46■□□□□ 0.87
CTSA-211ENST00000606066 PRAG1Q86YV5 1406 aa20.45■□□□□ 0.86
CTSA-211ENST00000606066 LAMC1P11047 1609 aa20.45■□□□□ 0.86
CTSA-211ENST00000606066 LRPPRCP42704 1394 aaKnown RBP20.45■□□□□ 0.86
CTSA-211ENST00000606066 C14orf37Q86TY3 774 aa20.44■□□□□ 0.86
CTSA-211ENST00000606066 STK26Q9P289 416 aa20.44■□□□□ 0.86
CTSA-211ENST00000606066 ABCC11Q96J66 1382 aa20.44■□□□□ 0.86
CTSA-211ENST00000606066 SETD1AO15047 1707 aaKnown RBP20.43■□□□□ 0.86
CTSA-211ENST00000606066 SPATA31A6Q5VVP1 1343 aa20.43■□□□□ 0.86
CTSA-211ENST00000606066 ROBO1Q9Y6N7 1651 aa20.42■□□□□ 0.86
CTSA-211ENST00000606066 PTCH1Q13635 1447 aa20.42■□□□□ 0.86
CTSA-211ENST00000606066 YTHDC2Q9H6S0 1430 aaKnown RBP20.42■□□□□ 0.86
CTSA-211ENST00000606066 ATF3P18847 181 aa20.41■□□□□ 0.86
CTSA-211ENST00000606066 SIRT1Q96EB6 747 aa20.41■□□□□ 0.86
CTSA-211ENST00000606066 XRN1Q8IZH2 1706 aaKnown RBP20.41■□□□□ 0.86
CTSA-211ENST00000606066 TECPR2O15040 1411 aa20.39■□□□□ 0.85
CTSA-211ENST00000606066 ROBO2Q9HCK4 1378 aa20.39■□□□□ 0.85
CTSA-211ENST00000606066 ASXL1Q8IXJ9 1541 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms