RNA–Protein interactions for RNA: ENST00000606055.1

LINC00458-204, long intergenic non-protein coding RNA 458, humanhuman

TSL 3

Gene LINC00458, Length 425 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-204ENST00000606055 CLTCL1P53675 1640 aa10.46□□□□□ -0.74
LINC00458-204ENST00000606055 SCAF11Q99590 1463 aaKnown RBP10.45□□□□□ -0.74
LINC00458-204ENST00000606055 ARHGAP23Q9P227 1491 aa10.45□□□□□ -0.74
LINC00458-204ENST00000606055 SPATA31E1Q6ZUB1 1445 aa10.45□□□□□ -0.74
LINC00458-204ENST00000606055 CHGAP10645 457 aaKnown RBP10.45□□□□□ -0.74
LINC00458-204ENST00000606055 CERKQ8TCT0 537 aa10.45□□□□□ -0.74
LINC00458-204ENST00000606055 EID1Q9Y6B2 187 aa10.45□□□□□ -0.74
LINC00458-204ENST00000606055 MED14O60244 1454 aa10.44□□□□□ -0.74
LINC00458-204ENST00000606055 NPHP4O75161 1426 aaPredicted RBP10.44□□□□□ -0.74
LINC00458-204ENST00000606055 ZFYVE9O95405 1425 aa10.44□□□□□ -0.74
LINC00458-204ENST00000606055 TMEM2Q9UHN6 1383 aa10.44□□□□□ -0.74
LINC00458-204ENST00000606055 HDGFP51858 240 aaKnown RBP10.43□□□□□ -0.74
LINC00458-204ENST00000606055 CCER1Q8TC90 406 aaPredicted RBP10.43□□□□□ -0.74
LINC00458-204ENST00000606055 TXNDC2Q86VQ3 553 aa10.42□□□□□ -0.74
LINC00458-204ENST00000606055 FOXD1Q16676 465 aa10.41□□□□□ -0.74
LINC00458-204ENST00000606055 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.41□□□□□ -0.74
LINC00458-204ENST00000606055 PPLO60437 1756 aa10.41□□□□□ -0.74
LINC00458-204ENST00000606055 RIMS2Q9UQ26 1411 aa10.41□□□□□ -0.74
LINC00458-204ENST00000606055 STRCP1A6NGW2 1772 aa10.4□□□□□ -0.74
LINC00458-204ENST00000606055 PPP1R15AO75807 674 aaPredicted RBP10.4□□□□□ -0.74
LINC00458-204ENST00000606055 LTBP4Q8N2S1 1624 aa10.4□□□□□ -0.75
LINC00458-204ENST00000606055 CHD2O14647 1828 aaKnown RBP10.4□□□□□ -0.75
LINC00458-204ENST00000606055 MYOM2P54296 1465 aa10.39□□□□□ -0.75
LINC00458-204ENST00000606055 LTKP29376 864 aa10.39□□□□□ -0.75
LINC00458-204ENST00000606055 ZNF326Q5BKZ1 582 aaKnown RBP10.39□□□□□ -0.75
LINC00458-204ENST00000606055 BCANQ96GW7 911 aa10.39□□□□□ -0.75
LINC00458-204ENST00000606055 IFT172Q9UG01 1749 aa10.38□□□□□ -0.75
LINC00458-204ENST00000606055 VGFO15240 615 aaPredicted RBP10.38□□□□□ -0.75
LINC00458-204ENST00000606055 ZEB1P37275 1124 aaPredicted RBP10.38□□□□□ -0.75
LINC00458-204ENST00000606055 CPS1P31327 1500 aa10.38□□□□□ -0.75
LINC00458-204ENST00000606055 ZNF335Q9H4Z2 1342 aaPredicted RBP10.37□□□□□ -0.75
LINC00458-204ENST00000606055 NRXN1Q9ULB1 1477 aa10.37□□□□□ -0.75
LINC00458-204ENST00000606055 DIP2AQ14689 1571 aa10.37□□□□□ -0.75
LINC00458-204ENST00000606055 NEXMIFQ5QGS0 1516 aa10.37□□□□□ -0.75
LINC00458-204ENST00000606055 IQSEC2Q5JU85 1478 aa10.36□□□□□ -0.75
LINC00458-204ENST00000606055 TONSLQ96HA7 1378 aa10.36□□□□□ -0.75
LINC00458-204ENST00000606055 PLEKHG1Q9ULL1 1385 aa10.36□□□□□ -0.75
LINC00458-204ENST00000606055 XIRP1Q702N8 1843 aaKnown RBP10.35□□□□□ -0.75
LINC00458-204ENST00000606055 NUTM2DQ5VT03 806 aaPredicted RBP10.34□□□□□ -0.75
LINC00458-204ENST00000606055 SIN3AQ96ST3 1273 aa10.34□□□□□ -0.75
LINC00458-204ENST00000606055 NRXN3Q9Y4C0 1643 aa10.33□□□□□ -0.76
LINC00458-204ENST00000606055 L3MBTL2Q969R5 705 aa10.33□□□□□ -0.76
LINC00458-204ENST00000606055 SENP3Q9H4L4 574 aaPredicted RBP10.33□□□□□ -0.76
LINC00458-204ENST00000606055 SETBP1Q9Y6X0 1596 aa10.33□□□□□ -0.76
LINC00458-204ENST00000606055 PIK3C2GO75747 1445 aa10.33□□□□□ -0.76
LINC00458-204ENST00000606055 NWD1Q149M9 1564 aa10.32□□□□□ -0.76
LINC00458-204ENST00000606055 PIK3R4Q99570 1358 aa10.32□□□□□ -0.76
LINC00458-204ENST00000606055 SLC26A8Q96RN1 970 aa10.32□□□□□ -0.76
LINC00458-204ENST00000606055 PRAG1Q86YV5 1406 aa10.32□□□□□ -0.76
LINC00458-204ENST00000606055 SETD1AO15047 1707 aaKnown RBP10.31□□□□□ -0.76
LINC00458-204ENST00000606055 KIAA1210Q9ULL0 1709 aa10.31□□□□□ -0.76
LINC00458-204ENST00000606055 LAMC1P11047 1609 aa10.31□□□□□ -0.76
LINC00458-204ENST00000606055 NEUROD1Q13562 356 aa10.3□□□□□ -0.76
LINC00458-204ENST00000606055 DCAF11Q8TEB1 546 aa10.3□□□□□ -0.76
LINC00458-204ENST00000606055 TBX22Q9Y458 520 aa10.3□□□□□ -0.76
LINC00458-204ENST00000606055 NKTRP30414 1462 aaKnown RBP10.3□□□□□ -0.76
LINC00458-204ENST00000606055 GPRASP1Q5JY77 1395 aa10.29□□□□□ -0.76
LINC00458-204ENST00000606055 LRRC7Q96NW7 1537 aa10.29□□□□□ -0.76
LINC00458-204ENST00000606055 KCNA6P17658 529 aa10.29□□□□□ -0.76
LINC00458-204ENST00000606055 RGL3Q3MIN7 710 aa10.29□□□□□ -0.76
LINC00458-204ENST00000606055 C14orf93Q9H972 538 aaKnown RBP10.29□□□□□ -0.76
LINC00458-204ENST00000606055 ADAMTS13Q76LX8 1427 aa10.29□□□□□ -0.76
LINC00458-204ENST00000606055 XRN1Q8IZH2 1706 aaKnown RBP10.27□□□□□ -0.76
LINC00458-204ENST00000606055 ALKQ9UM73 1620 aa10.27□□□□□ -0.77
LINC00458-204ENST00000606055 SIRT1Q96EB6 747 aa10.27□□□□□ -0.77
LINC00458-204ENST00000606055 RALGAPBQ86X10 1494 aa10.27□□□□□ -0.77
LINC00458-204ENST00000606055 ADGRF5Q8IZF2 1346 aa10.27□□□□□ -0.77
LINC00458-204ENST00000606055 UBAP1LF5GYI3 381 aa10.26□□□□□ -0.77
LINC00458-204ENST00000606055 PROSER2Q86WR7 435 aaPredicted RBP10.26□□□□□ -0.77
LINC00458-204ENST00000606055 KNDC1Q76NI1 1749 aa10.25□□□□□ -0.77
LINC00458-204ENST00000606055 SLC24A1O60721 1099 aa10.25□□□□□ -0.77
LINC00458-204ENST00000606055 TECPR2O15040 1411 aa10.24□□□□□ -0.77
LINC00458-204ENST00000606055 TOM1O60784 492 aa10.24□□□□□ -0.77
LINC00458-204ENST00000606055 ABCC11Q96J66 1382 aa10.24□□□□□ -0.77
LINC00458-204ENST00000606055 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.24□□□□□ -0.77
LINC00458-204ENST00000606055 ADGRB1O14514 1584 aa10.23□□□□□ -0.77
LINC00458-204ENST00000606055 TRPM1Q7Z4N2 1603 aa10.23□□□□□ -0.77
LINC00458-204ENST00000606055 AMOTL2Q9Y2J4 779 aa10.23□□□□□ -0.77
LINC00458-204ENST00000606055 TMEM94Q12767 1356 aa10.23□□□□□ -0.77
LINC00458-204ENST00000606055 NCOA3Q9Y6Q9 1424 aa10.23□□□□□ -0.77
LINC00458-204ENST00000606055 KDM2AQ9Y2K7 1162 aa10.22□□□□□ -0.77
LINC00458-204ENST00000606055 SCAF1Q9H7N4 1312 aaKnown RBP10.22□□□□□ -0.77
LINC00458-204ENST00000606055 METP08581 1390 aa10.22□□□□□ -0.77
LINC00458-204ENST00000606055 LRPPRCP42704 1394 aaKnown RBP10.22□□□□□ -0.77
LINC00458-204ENST00000606055 MSH6P52701 1360 aa10.22□□□□□ -0.77
LINC00458-204ENST00000606055 PTPRUQ92729 1446 aa10.22□□□□□ -0.77
LINC00458-204ENST00000606055 DLC1Q96QB1 1528 aa10.22□□□□□ -0.77
LINC00458-204ENST00000606055 NALCNQ8IZF0 1738 aa10.21□□□□□ -0.77
LINC00458-204ENST00000606055 NBPF8Q3BBV2 869 aa10.21□□□□□ -0.77
LINC00458-204ENST00000606055 C14orf37Q86TY3 774 aa10.21□□□□□ -0.77
LINC00458-204ENST00000606055 PTCH1Q13635 1447 aa10.21□□□□□ -0.78
LINC00458-204ENST00000606055 FAM135BQ49AJ0 1406 aa10.21□□□□□ -0.78
LINC00458-204ENST00000606055 ROCK2O75116 1388 aaKnown RBP10.2□□□□□ -0.78
LINC00458-204ENST00000606055 EIF3AQ14152 1382 aaKnown RBP10.2□□□□□ -0.78
LINC00458-204ENST00000606055 SBNO2Q9Y2G9 1366 aa10.2□□□□□ -0.78
LINC00458-204ENST00000606055 YTHDC2Q9H6S0 1430 aaKnown RBP10.19□□□□□ -0.78
LINC00458-204ENST00000606055 PIP4K2BP78356 416 aa10.19□□□□□ -0.78
LINC00458-204ENST00000606055 CFAP70Q5T0N1 1121 aa10.19□□□□□ -0.78
LINC00458-204ENST00000606055 RBM33Q96EV2 1170 aaKnown RBP10.19□□□□□ -0.78
LINC00458-204ENST00000606055 ROBO1Q9Y6N7 1651 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms