RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 ADGRB3O60242 1522 aa27.42■■□□□ 1.98
SHKBP1-227ENST00000602011 BCANQ96GW7 911 aa27.41■■□□□ 1.98
SHKBP1-227ENST00000602011 ROBO1Q9Y6N7 1651 aa27.4■■□□□ 1.98
SHKBP1-227ENST00000602011 ROCK1Q13464 1354 aa27.37■■□□□ 1.97
SHKBP1-227ENST00000602011 POTEAQ6S8J7 498 aa27.37■■□□□ 1.97
SHKBP1-227ENST00000602011 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.36■■□□□ 1.97
SHKBP1-227ENST00000602011 NWD1Q149M9 1564 aa27.35■■□□□ 1.97
SHKBP1-227ENST00000602011 MYO5BQ9ULV0 1848 aa27.34■■□□□ 1.97
SHKBP1-227ENST00000602011 NKTRP30414 1462 aaKnown RBP27.32■■□□□ 1.96
SHKBP1-227ENST00000602011 PPP1R15AO75807 674 aaPredicted RBP27.31■■□□□ 1.96
SHKBP1-227ENST00000602011 PLEKHG1Q9ULL1 1385 aa27.31■■□□□ 1.96
SHKBP1-227ENST00000602011 ZFYVE9O95405 1425 aa27.31■■□□□ 1.96
SHKBP1-227ENST00000602011 TBX22Q9Y458 520 aa27.3■■□□□ 1.96
SHKBP1-227ENST00000602011 MSH6P52701 1360 aa27.29■■□□□ 1.96
SHKBP1-227ENST00000602011 RIMS2Q9UQ26 1411 aa27.29■■□□□ 1.96
SHKBP1-227ENST00000602011 GCC2Q8IWJ2 1684 aa27.28■■□□□ 1.96
SHKBP1-227ENST00000602011 NUTM2DQ5VT03 806 aaPredicted RBP27.27■■□□□ 1.96
SHKBP1-227ENST00000602011 SLAIN2Q9P270 581 aa27.26■■□□□ 1.95
SHKBP1-227ENST00000602011 CHGAP10645 457 aaKnown RBP27.25■■□□□ 1.95
SHKBP1-227ENST00000602011 PHLPP1O60346 1717 aa27.24■■□□□ 1.95
SHKBP1-227ENST00000602011 NCOA3Q9Y6Q9 1424 aa27.24■■□□□ 1.95
SHKBP1-227ENST00000602011 TMEM131LA2VDJ0 1609 aa27.23■■□□□ 1.95
SHKBP1-227ENST00000602011 CHD2O14647 1828 aaKnown RBP27.23■■□□□ 1.95
SHKBP1-227ENST00000602011 UNC13BO14795 1591 aa27.21■■□□□ 1.95
SHKBP1-227ENST00000602011 NUP155O75694 1391 aa27.21■■□□□ 1.95
SHKBP1-227ENST00000602011 PIK3R4Q99570 1358 aa27.2■■□□□ 1.94
SHKBP1-227ENST00000602011 SETD1AO15047 1707 aaKnown RBP27.17■■□□□ 1.94
SHKBP1-227ENST00000602011 JCADQ9P266 1359 aa27.17■■□□□ 1.94
SHKBP1-227ENST00000602011 C14orf37Q86TY3 774 aa27.16■■□□□ 1.94
SHKBP1-227ENST00000602011 E9PCH4 1651 aa27.16■■□□□ 1.94
SHKBP1-227ENST00000602011 ADAMTS13Q76LX8 1427 aa27.16■■□□□ 1.94
SHKBP1-227ENST00000602011 COL16A1Q07092 1604 aaPredicted RBP27.14■■□□□ 1.94
SHKBP1-227ENST00000602011 ITGAEP38570 1179 aa27.13■■□□□ 1.93
SHKBP1-227ENST00000602011 C19orf44Q9H6X5 657 aa27.12■■□□□ 1.93
SHKBP1-227ENST00000602011 IQGAP3Q86VI3 1631 aa27.12■■□□□ 1.93
SHKBP1-227ENST00000602011 CADPS2Q86UW7 1296 aa27.11■■□□□ 1.93
SHKBP1-227ENST00000602011 LRP6O75581 1613 aa27.11■■□□□ 1.93
SHKBP1-227ENST00000602011 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.08■■□□□ 1.93
SHKBP1-227ENST00000602011 DIP2AQ14689 1571 aa27.08■■□□□ 1.93
SHKBP1-227ENST00000602011 ATF3P18847 181 aa27.07■■□□□ 1.92
SHKBP1-227ENST00000602011 PTPRUQ92729 1446 aa27.07■■□□□ 1.92
SHKBP1-227ENST00000602011 AMOTL2Q9Y2J4 779 aa27.04■■□□□ 1.92
SHKBP1-227ENST00000602011 MEX3CQ5U5Q3 659 aaKnown RBP27.03■■□□□ 1.92
SHKBP1-227ENST00000602011 AHDC1Q5TGY3 1603 aaPredicted RBP27.01■■□□□ 1.91
SHKBP1-227ENST00000602011 TRPM2O94759 1503 aa27■■□□□ 1.91
SHKBP1-227ENST00000602011 SPATA31A6Q5VVP1 1343 aa26.99■■□□□ 1.91
SHKBP1-227ENST00000602011 ZNF326Q5BKZ1 582 aaKnown RBP26.99■■□□□ 1.91
SHKBP1-227ENST00000602011 BRINP3Q76B58 766 aa26.99■■□□□ 1.91
SHKBP1-227ENST00000602011 PPARGC1BQ86YN6 1023 aaKnown RBP26.99■■□□□ 1.91
SHKBP1-227ENST00000602011 TRIM52Q96A61 297 aa26.98■■□□□ 1.91
SHKBP1-227ENST00000602011 NUTM2BA6NNL0 878 aaPredicted RBP26.96■■□□□ 1.91
SHKBP1-227ENST00000602011 NUTM2EB1AL46 878 aaPredicted RBP26.96■■□□□ 1.91
SHKBP1-227ENST00000602011 NUTM2AQ8IVF1 878 aaPredicted RBP26.96■■□□□ 1.91
SHKBP1-227ENST00000602011 SHPRHQ149N8 1683 aa26.95■■□□□ 1.91
SHKBP1-227ENST00000602011 NRXN3Q9Y4C0 1643 aa26.95■■□□□ 1.91
SHKBP1-227ENST00000602011 RRBP1Q9P2E9 1410 aaKnown RBP26.94■■□□□ 1.9
SHKBP1-227ENST00000602011 DCCP43146 1447 aa26.93■■□□□ 1.9
SHKBP1-227ENST00000602011 ZNF772Q68DY9 489 aaPredicted RBP26.92■■□□□ 1.9
SHKBP1-227ENST00000602011 XRN1Q8IZH2 1706 aaKnown RBP26.91■■□□□ 1.9
SHKBP1-227ENST00000602011 METP08581 1390 aa26.91■■□□□ 1.9
SHKBP1-227ENST00000602011 ASXL1Q8IXJ9 1541 aa26.9■■□□□ 1.9
SHKBP1-227ENST00000602011 SETBP1Q9Y6X0 1596 aa26.89■■□□□ 1.9
SHKBP1-227ENST00000602011 DDX17Q92841 729 aaKnown RBP26.89■■□□□ 1.9
SHKBP1-227ENST00000602011 SPHKAPQ2M3C7 1700 aa26.88■■□□□ 1.89
SHKBP1-227ENST00000602011 VGFO15240 615 aaPredicted RBP26.88■■□□□ 1.89
SHKBP1-227ENST00000602011 UPF1Q92900 1129 aaKnown RBP eCLIP26.88■■□□□ 1.89
SHKBP1-227ENST00000602011 MST1RQ04912 1400 aa26.88■■□□□ 1.89
SHKBP1-227ENST00000602011 NAIPQ13075 1403 aa26.87■■□□□ 1.89
SHKBP1-227ENST00000602011 RPGRIP1LQ68CZ1 1315 aa26.86■■□□□ 1.89
SHKBP1-227ENST00000602011 RXRBP28702 533 aa26.84■■□□□ 1.89
SHKBP1-227ENST00000602011 AFF2P51816 1311 aa26.83■■□□□ 1.89
SHKBP1-227ENST00000602011 CLTCL1P53675 1640 aa26.81■■□□□ 1.88
SHKBP1-227ENST00000602011 NHSL1Q5SYE7 1610 aa26.81■■□□□ 1.88
SHKBP1-227ENST00000602011 SETD5Q9C0A6 1442 aa26.81■■□□□ 1.88
SHKBP1-227ENST00000602011 LRRC59Q96AG4 307 aaKnown RBP26.8■■□□□ 1.88
SHKBP1-227ENST00000602011 SLC4A1APQ9BWU0 796 aaKnown RBP26.79■■□□□ 1.88
SHKBP1-227ENST00000602011 HFM1A2PYH4 1435 aa26.79■■□□□ 1.88
SHKBP1-227ENST00000602011 NEXMIFQ5QGS0 1516 aa26.79■■□□□ 1.88
SHKBP1-227ENST00000602011 ADGRL3Q9HAR2 1447 aa26.78■■□□□ 1.88
SHKBP1-227ENST00000602011 NALCNQ8IZF0 1738 aa26.78■■□□□ 1.88
SHKBP1-227ENST00000602011 C8orf37Q96NL8 207 aa26.76■■□□□ 1.87
SHKBP1-227ENST00000602011 PNPLA6Q8IY17 1366 aa26.75■■□□□ 1.87
SHKBP1-227ENST00000602011 ACIN1Q9UKV3 1341 aaKnown RBP26.74■■□□□ 1.87
SHKBP1-227ENST00000602011 CDK12Q9NYV4 1490 aaPredicted RBP26.7■■□□□ 1.87
SHKBP1-227ENST00000602011 KIF1BO60333 1816 aa26.69■■□□□ 1.86
SHKBP1-227ENST00000602011 C1orf167Q5SNV9 1468 aa26.69■■□□□ 1.86
SHKBP1-227ENST00000602011 RGS12O14924 1447 aa26.69■■□□□ 1.86
SHKBP1-227ENST00000602011 ADAMTS2O95450 1211 aa26.69■■□□□ 1.86
SHKBP1-227ENST00000602011 PTCH1Q13635 1447 aa26.69■■□□□ 1.86
SHKBP1-227ENST00000602011 QTRT2Q9H974 415 aaKnown RBP26.69■■□□□ 1.86
SHKBP1-227ENST00000602011 ROBO2Q9HCK4 1378 aa26.68■■□□□ 1.86
SHKBP1-227ENST00000602011 ORAI2Q96SN7 254 aa26.67■■□□□ 1.86
SHKBP1-227ENST00000602011 PRAG1Q86YV5 1406 aa26.66■■□□□ 1.86
SHKBP1-227ENST00000602011 RBM6P78332 1123 aaKnown RBP26.63■■□□□ 1.85
SHKBP1-227ENST00000602011 NGLY1Q96IV0 654 aa26.63■■□□□ 1.85
SHKBP1-227ENST00000602011 SOS2Q07890 1332 aaPredicted RBP26.58■■□□□ 1.85
SHKBP1-227ENST00000602011 ANKRD30BQ9BXX2 1392 aa26.58■■□□□ 1.84
SHKBP1-227ENST00000602011 LAMC1P11047 1609 aa26.57■■□□□ 1.84
SHKBP1-227ENST00000602011 CCDC144AA2RUR9 1427 aa26.56■■□□□ 1.84
SHKBP1-227ENST00000602011 MPHOSPH9Q99550 1183 aa26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms