RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 NUP155O75694 1391 aa25.97■■□□□ 1.75
SCAF1-204ENST00000601038 TMEM94Q12767 1356 aa25.97■■□□□ 1.75
SCAF1-204ENST00000601038 TMEM131LA2VDJ0 1609 aa25.96■■□□□ 1.75
SCAF1-204ENST00000601038 PROSER2Q86WR7 435 aaPredicted RBP25.96■■□□□ 1.75
SCAF1-204ENST00000601038 E9PCH4 1651 aa25.96■■□□□ 1.75
SCAF1-204ENST00000601038 RIMS2Q9UQ26 1411 aa25.96■■□□□ 1.75
SCAF1-204ENST00000601038 IQGAP3Q86VI3 1631 aa25.96■■□□□ 1.75
SCAF1-204ENST00000601038 MED1Q15648 1581 aaPredicted RBP25.95■■□□□ 1.75
SCAF1-204ENST00000601038 PLEKHG1Q9ULL1 1385 aa25.95■■□□□ 1.74
SCAF1-204ENST00000601038 MYO5BQ9ULV0 1848 aa25.94■■□□□ 1.74
SCAF1-204ENST00000601038 PPP1R15AO75807 674 aaPredicted RBP25.94■■□□□ 1.74
SCAF1-204ENST00000601038 CHGAP10645 457 aaKnown RBP25.93■■□□□ 1.74
SCAF1-204ENST00000601038 SENP3Q9H4L4 574 aaPredicted RBP25.93■■□□□ 1.74
SCAF1-204ENST00000601038 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.92■■□□□ 1.74
SCAF1-204ENST00000601038 NKTRP30414 1462 aaKnown RBP25.91■■□□□ 1.74
SCAF1-204ENST00000601038 NWD1Q149M9 1564 aa25.9■■□□□ 1.74
SCAF1-204ENST00000601038 FAM135BQ49AJ0 1406 aa25.89■■□□□ 1.74
SCAF1-204ENST00000601038 RBM33Q96EV2 1170 aaKnown RBP25.89■■□□□ 1.74
SCAF1-204ENST00000601038 TBX22Q9Y458 520 aa25.89■■□□□ 1.74
SCAF1-204ENST00000601038 RRBP1Q9P2E9 1410 aaKnown RBP25.85■■□□□ 1.73
SCAF1-204ENST00000601038 NUTM2DQ5VT03 806 aaPredicted RBP25.84■■□□□ 1.73
SCAF1-204ENST00000601038 PHF23Q9BUL5 403 aaPredicted RBP25.83■■□□□ 1.73
SCAF1-204ENST00000601038 CHD2O14647 1828 aaKnown RBP25.83■■□□□ 1.73
SCAF1-204ENST00000601038 MSH6P52701 1360 aa25.82■■□□□ 1.72
SCAF1-204ENST00000601038 ADAMTS13Q76LX8 1427 aa25.8■■□□□ 1.72
SCAF1-204ENST00000601038 PIK3R4Q99570 1358 aa25.78■■□□□ 1.72
SCAF1-204ENST00000601038 SLAIN2Q9P270 581 aa25.77■■□□□ 1.72
SCAF1-204ENST00000601038 NCOA3Q9Y6Q9 1424 aa25.77■■□□□ 1.72
SCAF1-204ENST00000601038 DIP2AQ14689 1571 aa25.76■■□□□ 1.71
SCAF1-204ENST00000601038 ROBO1Q9Y6N7 1651 aa25.75■■□□□ 1.71
SCAF1-204ENST00000601038 NAIPQ13075 1403 aa25.74■■□□□ 1.71
SCAF1-204ENST00000601038 SPHKAPQ2M3C7 1700 aa25.74■■□□□ 1.71
SCAF1-204ENST00000601038 ZNF326Q5BKZ1 582 aaKnown RBP25.7■■□□□ 1.7
SCAF1-204ENST00000601038 C14orf37Q86TY3 774 aa25.7■■□□□ 1.7
SCAF1-204ENST00000601038 TRPM2O94759 1503 aa25.69■■□□□ 1.7
SCAF1-204ENST00000601038 AMOTL2Q9Y2J4 779 aa25.69■■□□□ 1.7
SCAF1-204ENST00000601038 C19orf44Q9H6X5 657 aa25.68■■□□□ 1.7
SCAF1-204ENST00000601038 PTPRUQ92729 1446 aa25.66■■□□□ 1.7
SCAF1-204ENST00000601038 CADPS2Q86UW7 1296 aa25.66■■□□□ 1.7
SCAF1-204ENST00000601038 HFM1A2PYH4 1435 aa25.65■■□□□ 1.7
SCAF1-204ENST00000601038 RGS17Q9UGC6 210 aaPredicted RBP25.65■■□□□ 1.7
SCAF1-204ENST00000601038 TRIM52Q96A61 297 aa25.64■■□□□ 1.7
SCAF1-204ENST00000601038 SETBP1Q9Y6X0 1596 aa25.64■■□□□ 1.69
SCAF1-204ENST00000601038 ATF3P18847 181 aa25.63■■□□□ 1.69
SCAF1-204ENST00000601038 CLTCL1P53675 1640 aa25.63■■□□□ 1.69
SCAF1-204ENST00000601038 NRXN3Q9Y4C0 1643 aa25.62■■□□□ 1.69
SCAF1-204ENST00000601038 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.6■■□□□ 1.69
SCAF1-204ENST00000601038 PHLPP1O60346 1717 aa25.6■■□□□ 1.69
SCAF1-204ENST00000601038 METP08581 1390 aa25.58■■□□□ 1.69
SCAF1-204ENST00000601038 NEXMIFQ5QGS0 1516 aa25.58■■□□□ 1.68
SCAF1-204ENST00000601038 JCADQ9P266 1359 aa25.57■■□□□ 1.68
SCAF1-204ENST00000601038 SLC4A1APQ9BWU0 796 aaKnown RBP25.57■■□□□ 1.68
SCAF1-204ENST00000601038 KIF1BO60333 1816 aa25.56■■□□□ 1.68
SCAF1-204ENST00000601038 XRN1Q8IZH2 1706 aaKnown RBP25.56■■□□□ 1.68
SCAF1-204ENST00000601038 DCCP43146 1447 aa25.54■■□□□ 1.68
SCAF1-204ENST00000601038 VGFO15240 615 aaPredicted RBP25.53■■□□□ 1.68
SCAF1-204ENST00000601038 COL16A1Q07092 1604 aaPredicted RBP25.52■■□□□ 1.68
SCAF1-204ENST00000601038 RPGRIP1LQ68CZ1 1315 aa25.51■■□□□ 1.67
SCAF1-204ENST00000601038 POTEAQ6S8J7 498 aa25.5■■□□□ 1.67
SCAF1-204ENST00000601038 BRINP3Q76B58 766 aa25.5■■□□□ 1.67
SCAF1-204ENST00000601038 AHDC1Q5TGY3 1603 aaPredicted RBP25.49■■□□□ 1.67
SCAF1-204ENST00000601038 SPATA31A6Q5VVP1 1343 aa25.47■■□□□ 1.67
SCAF1-204ENST00000601038 MST1RQ04912 1400 aa25.45■■□□□ 1.66
SCAF1-204ENST00000601038 ADGRL3Q9HAR2 1447 aa25.44■■□□□ 1.66
SCAF1-204ENST00000601038 FOXD1Q16676 465 aa25.43■■□□□ 1.66
SCAF1-204ENST00000601038 ASXL1Q8IXJ9 1541 aa25.4■■□□□ 1.66
SCAF1-204ENST00000601038 MPHOSPH9Q99550 1183 aa25.39■■□□□ 1.66
SCAF1-204ENST00000601038 PTCH1Q13635 1447 aa25.38■■□□□ 1.65
SCAF1-204ENST00000601038 LRP6O75581 1613 aa25.38■■□□□ 1.65
SCAF1-204ENST00000601038 SETD1AO15047 1707 aaKnown RBP25.38■■□□□ 1.65
SCAF1-204ENST00000601038 SHPRHQ149N8 1683 aa25.38■■□□□ 1.65
SCAF1-204ENST00000601038 PPLO60437 1756 aa25.38■■□□□ 1.65
SCAF1-204ENST00000601038 MEX3CQ5U5Q3 659 aaKnown RBP25.37■■□□□ 1.65
SCAF1-204ENST00000601038 CCDC144AA2RUR9 1427 aa25.37■■□□□ 1.65
SCAF1-204ENST00000601038 ROBO2Q9HCK4 1378 aa25.36■■□□□ 1.65
SCAF1-204ENST00000601038 PRAG1Q86YV5 1406 aa25.36■■□□□ 1.65
SCAF1-204ENST00000601038 SETD5Q9C0A6 1442 aa25.36■■□□□ 1.65
SCAF1-204ENST00000601038 NALCNQ8IZF0 1738 aa25.35■■□□□ 1.65
SCAF1-204ENST00000601038 LRRC59Q96AG4 307 aaKnown RBP25.34■■□□□ 1.65
SCAF1-204ENST00000601038 ACIN1Q9UKV3 1341 aaKnown RBP25.34■■□□□ 1.65
SCAF1-204ENST00000601038 RGL3Q3MIN7 710 aa25.32■■□□□ 1.64
SCAF1-204ENST00000601038 ZNF772Q68DY9 489 aaPredicted RBP25.32■■□□□ 1.64
SCAF1-204ENST00000601038 NHSL1Q5SYE7 1610 aa25.32■■□□□ 1.64
SCAF1-204ENST00000601038 C1orf167Q5SNV9 1468 aa25.32■■□□□ 1.64
SCAF1-204ENST00000601038 SPATA31E1Q6ZUB1 1445 aa25.31■■□□□ 1.64
SCAF1-204ENST00000601038 ADGRF5Q8IZF2 1346 aa25.31■■□□□ 1.64
SCAF1-204ENST00000601038 NUTM2BA6NNL0 878 aaPredicted RBP25.3■■□□□ 1.64
SCAF1-204ENST00000601038 NUTM2EB1AL46 878 aaPredicted RBP25.3■■□□□ 1.64
SCAF1-204ENST00000601038 NUTM2AQ8IVF1 878 aaPredicted RBP25.3■■□□□ 1.64
SCAF1-204ENST00000601038 DDX17Q92841 729 aaKnown RBP25.3■■□□□ 1.64
SCAF1-204ENST00000601038 ANKRD30BQ9BXX2 1392 aa25.3■■□□□ 1.64
SCAF1-204ENST00000601038 ORAI2Q96SN7 254 aa25.25■■□□□ 1.63
SCAF1-204ENST00000601038 PNPLA6Q8IY17 1366 aa25.23■■□□□ 1.63
SCAF1-204ENST00000601038 SOS2Q07890 1332 aaPredicted RBP25.21■■□□□ 1.63
SCAF1-204ENST00000601038 LAMC1P11047 1609 aa25.21■■□□□ 1.63
SCAF1-204ENST00000601038 IFT172Q9UG01 1749 aa25.2■■□□□ 1.63
SCAF1-204ENST00000601038 LRPPRCP42704 1394 aaKnown RBP25.2■■□□□ 1.63
SCAF1-204ENST00000601038 STK26Q9P289 416 aa25.2■■□□□ 1.62
SCAF1-204ENST00000601038 TECPR2O15040 1411 aa25.2■■□□□ 1.62
SCAF1-204ENST00000601038 PIK3C2GO75747 1445 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms