RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 IFT172Q9UG01 1749 aa20.67■□□□□ 0.9
UPF1-211ENST00000600868 DCAF11Q8TEB1 546 aa20.67■□□□□ 0.9
UPF1-211ENST00000600868 ZFYVE9O95405 1425 aa20.67■□□□□ 0.9
UPF1-211ENST00000600868 RIMS2Q9UQ26 1411 aa20.67■□□□□ 0.9
UPF1-211ENST00000600868 PPLO60437 1756 aa20.67■□□□□ 0.9
UPF1-211ENST00000600868 ZEB1P37275 1124 aaPredicted RBP20.66■□□□□ 0.9
UPF1-211ENST00000600868 HDGFP51858 240 aaKnown RBP20.66■□□□□ 0.9
UPF1-211ENST00000600868 LMTK3Q96Q04 1460 aa20.65■□□□□ 0.9
UPF1-211ENST00000600868 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.65■□□□□ 0.9
UPF1-211ENST00000600868 MYOM2P54296 1465 aa20.64■□□□□ 0.89
UPF1-211ENST00000600868 VGFO15240 615 aaPredicted RBP20.64■□□□□ 0.89
UPF1-211ENST00000600868 KDM2AQ9Y2K7 1162 aa20.63■□□□□ 0.89
UPF1-211ENST00000600868 PPP1R15AO75807 674 aaPredicted RBP20.62■□□□□ 0.89
UPF1-211ENST00000600868 EID1Q9Y6B2 187 aa20.61■□□□□ 0.89
UPF1-211ENST00000600868 NRXN1Q9ULB1 1477 aa20.6■□□□□ 0.89
UPF1-211ENST00000600868 LTKP29376 864 aa20.59■□□□□ 0.89
UPF1-211ENST00000600868 TXNDC2Q86VQ3 553 aa20.59■□□□□ 0.89
UPF1-211ENST00000600868 ADGRF5Q8IZF2 1346 aa20.58■□□□□ 0.89
UPF1-211ENST00000600868 SCAF11Q99590 1463 aaKnown RBP20.58■□□□□ 0.89
UPF1-211ENST00000600868 NUTM2DQ5VT03 806 aaPredicted RBP20.58■□□□□ 0.89
UPF1-211ENST00000600868 ANKLE2Q86XL3 938 aa20.58■□□□□ 0.89
UPF1-211ENST00000600868 PRAG1Q86YV5 1406 aa20.58■□□□□ 0.88
UPF1-211ENST00000600868 PIK3C2GO75747 1445 aa20.55■□□□□ 0.88
UPF1-211ENST00000600868 HSPA2P54652 639 aa20.55■□□□□ 0.88
UPF1-211ENST00000600868 PLEKHG1Q9ULL1 1385 aa20.55■□□□□ 0.88
UPF1-211ENST00000600868 NBPF8Q3BBV2 869 aa20.54■□□□□ 0.88
UPF1-211ENST00000600868 AEBP2Q6ZN18 517 aaPredicted RBP20.53■□□□□ 0.88
UPF1-211ENST00000600868 SETBP1Q9Y6X0 1596 aa20.52■□□□□ 0.88
UPF1-211ENST00000600868 MED14O60244 1454 aa20.52■□□□□ 0.88
UPF1-211ENST00000600868 POLR1AO95602 1720 aaPredicted RBP20.52■□□□□ 0.88
UPF1-211ENST00000600868 C14orf93Q9H972 538 aaKnown RBP20.5■□□□□ 0.87
UPF1-211ENST00000600868 NCKAP5LQ9HCH0 1330 aa20.5■□□□□ 0.87
UPF1-211ENST00000600868 KIAA1210Q9ULL0 1709 aa20.49■□□□□ 0.87
UPF1-211ENST00000600868 NRXN3Q9Y4C0 1643 aa20.49■□□□□ 0.87
UPF1-211ENST00000600868 LAMC1P11047 1609 aa20.48■□□□□ 0.87
UPF1-211ENST00000600868 TRPM1Q7Z4N2 1603 aa20.48■□□□□ 0.87
UPF1-211ENST00000600868 NPHP4O75161 1426 aaPredicted RBP20.47■□□□□ 0.87
UPF1-211ENST00000600868 ALKQ9UM73 1620 aa20.47■□□□□ 0.87
UPF1-211ENST00000600868 ADAMTS13Q76LX8 1427 aa20.46■□□□□ 0.87
UPF1-211ENST00000600868 IQGAP1P46940 1657 aa20.46■□□□□ 0.87
UPF1-211ENST00000600868 RALGAPBQ86X10 1494 aa20.46■□□□□ 0.87
UPF1-211ENST00000600868 CFAP70Q5T0N1 1121 aa20.46■□□□□ 0.87
UPF1-211ENST00000600868 BCANQ96GW7 911 aa20.46■□□□□ 0.87
UPF1-211ENST00000600868 STRCQ7RTU9 1775 aa20.46■□□□□ 0.87
UPF1-211ENST00000600868 DIP2AQ14689 1571 aa20.45■□□□□ 0.86
UPF1-211ENST00000600868 TBX22Q9Y458 520 aa20.44■□□□□ 0.86
UPF1-211ENST00000600868 SENP3Q9H4L4 574 aaPredicted RBP20.43■□□□□ 0.86
UPF1-211ENST00000600868 SETD1AO15047 1707 aaKnown RBP20.43■□□□□ 0.86
UPF1-211ENST00000600868 NBPF1Q3BBV0 1214 aa20.42■□□□□ 0.86
UPF1-211ENST00000600868 ROCK2O75116 1388 aaKnown RBP20.42■□□□□ 0.86
UPF1-211ENST00000600868 GPRASP1Q5JY77 1395 aa20.42■□□□□ 0.86
UPF1-211ENST00000600868 SLC26A8Q96RN1 970 aa20.41■□□□□ 0.86
UPF1-211ENST00000600868 ADGRB1O14514 1584 aa20.41■□□□□ 0.86
UPF1-211ENST00000600868 ASXL1Q8IXJ9 1541 aa20.38■□□□□ 0.85
UPF1-211ENST00000600868 METP08581 1390 aa20.38■□□□□ 0.85
UPF1-211ENST00000600868 DMRT2Q9Y5R5 561 aa20.38■□□□□ 0.85
UPF1-211ENST00000600868 PIK3R4Q99570 1358 aa20.37■□□□□ 0.85
UPF1-211ENST00000600868 TMEM132EQ6IEE7 984 aa20.37■□□□□ 0.85
UPF1-211ENST00000600868 CARD11Q9BXL7 1154 aa20.36■□□□□ 0.85
UPF1-211ENST00000600868 YTHDC2Q9H6S0 1430 aaKnown RBP20.34■□□□□ 0.85
UPF1-211ENST00000600868 LRPPRCP42704 1394 aaKnown RBP20.34■□□□□ 0.85
UPF1-211ENST00000600868 ABCC11Q96J66 1382 aa20.32■□□□□ 0.84
UPF1-211ENST00000600868 PTPRUQ92729 1446 aa20.31■□□□□ 0.84
UPF1-211ENST00000600868 CHD2O14647 1828 aaKnown RBP20.3■□□□□ 0.84
UPF1-211ENST00000600868 TECPR2O15040 1411 aa20.3■□□□□ 0.84
UPF1-211ENST00000600868 DLC1Q96QB1 1528 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 KNDC1Q76NI1 1749 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 XRN1Q8IZH2 1706 aaKnown RBP20.28■□□□□ 0.84
UPF1-211ENST00000600868 KCNA6P17658 529 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 SIRT1Q96EB6 747 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 STK26Q9P289 416 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 TRAK1Q9UPV9 953 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 AMOTL2Q9Y2J4 779 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 USP47Q96K76 1375 aa20.28■□□□□ 0.84
UPF1-211ENST00000600868 NWD1Q149M9 1564 aa20.27■□□□□ 0.84
UPF1-211ENST00000600868 EIF3AQ14152 1382 aaKnown RBP20.26■□□□□ 0.83
UPF1-211ENST00000600868 EIF4G2P78344 907 aaKnown RBP eCLIP20.26■□□□□ 0.83
UPF1-211ENST00000600868 CPS1P31327 1500 aa20.26■□□□□ 0.83
UPF1-211ENST00000600868 PTCH1Q13635 1447 aa20.25■□□□□ 0.83
UPF1-211ENST00000600868 FAM135BQ49AJ0 1406 aa20.25■□□□□ 0.83
UPF1-211ENST00000600868 ARHGEF28Q8N1W1 1705 aaKnown RBP20.24■□□□□ 0.83
UPF1-211ENST00000600868 NKTRP30414 1462 aaKnown RBP20.22■□□□□ 0.83
UPF1-211ENST00000600868 ROBO2Q9HCK4 1378 aa20.21■□□□□ 0.83
UPF1-211ENST00000600868 HSPA5P11021 654 aaKnown RBP20.21■□□□□ 0.83
UPF1-211ENST00000600868 CENPJQ9HC77 1338 aaPredicted RBP20.21■□□□□ 0.83
UPF1-211ENST00000600868 ST20-MTHFSA0A0A6YYL1 179 aa20.2■□□□□ 0.82
UPF1-211ENST00000600868 PRAM1Q96QH2 718 aa20.2■□□□□ 0.82
UPF1-211ENST00000600868 STRCP1A6NGW2 1772 aa20.2■□□□□ 0.82
UPF1-211ENST00000600868 POGKQ9P215 609 aa20.19■□□□□ 0.82
UPF1-211ENST00000600868 WAPLQ7Z5K2 1190 aa20.18■□□□□ 0.82
UPF1-211ENST00000600868 ZNF335Q9H4Z2 1342 aaPredicted RBP20.18■□□□□ 0.82
UPF1-211ENST00000600868 PLEKHH1Q9ULM0 1364 aa20.17■□□□□ 0.82
UPF1-211ENST00000600868 SBNO2Q9Y2G9 1366 aa20.17■□□□□ 0.82
UPF1-211ENST00000600868 QRICH2Q9H0J4 1663 aa20.16■□□□□ 0.82
UPF1-211ENST00000600868 SLC24A1O60721 1099 aa20.15■□□□□ 0.82
UPF1-211ENST00000600868 TESK2Q96S53 571 aa20.15■□□□□ 0.82
UPF1-211ENST00000600868 PROSER2Q86WR7 435 aaPredicted RBP20.14■□□□□ 0.81
UPF1-211ENST00000600868 NCOA3Q9Y6Q9 1424 aa20.13■□□□□ 0.81
UPF1-211ENST00000600868 SAFB2Q14151 953 aaKnown RBP eCLIP20.13■□□□□ 0.81
UPF1-211ENST00000600868 HIRIP3Q9BW71 556 aaPredicted RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms