RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ZNF326Q5BKZ1 582 aaKnown RBP28.29■■■□□ 2.12
UPF1-209ENST00000600310 SPATA31E1Q6ZUB1 1445 aa28.28■■■□□ 2.12
UPF1-209ENST00000600310 KIF1BO60333 1816 aa28.28■■■□□ 2.12
UPF1-209ENST00000600310 MYO5BQ9ULV0 1848 aa28.28■■■□□ 2.12
UPF1-209ENST00000600310 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.28■■■□□ 2.12
UPF1-209ENST00000600310 MED14O60244 1454 aa28.27■■■□□ 2.12
UPF1-209ENST00000600310 NEURL4Q96JN8 1562 aa28.26■■■□□ 2.11
UPF1-209ENST00000600310 NPHP4O75161 1426 aaPredicted RBP28.25■■■□□ 2.11
UPF1-209ENST00000600310 RPGRIP1LQ68CZ1 1315 aa28.24■■■□□ 2.11
UPF1-209ENST00000600310 POLR1AO95602 1720 aaPredicted RBP28.23■■■□□ 2.11
UPF1-209ENST00000600310 RGL3Q3MIN7 710 aa28.22■■■□□ 2.11
UPF1-209ENST00000600310 PPP1R15AO75807 674 aaPredicted RBP28.21■■■□□ 2.11
UPF1-209ENST00000600310 NUTM2DQ5VT03 806 aaPredicted RBP28.2■■■□□ 2.1
UPF1-209ENST00000600310 CERKQ8TCT0 537 aa28.2■■■□□ 2.1
UPF1-209ENST00000600310 NEXMIFQ5QGS0 1516 aa28.19■■■□□ 2.1
UPF1-209ENST00000600310 PLEKHG1Q9ULL1 1385 aa28.18■■■□□ 2.1
UPF1-209ENST00000600310 VGFO15240 615 aaPredicted RBP28.15■■■□□ 2.1
UPF1-209ENST00000600310 IQGAP1P46940 1657 aa28.14■■■□□ 2.1
UPF1-209ENST00000600310 SIN3AQ96ST3 1273 aa28.14■■■□□ 2.1
UPF1-209ENST00000600310 BCANQ96GW7 911 aa28.11■■■□□ 2.09
UPF1-209ENST00000600310 SLC26A8Q96RN1 970 aa28.08■■■□□ 2.09
UPF1-209ENST00000600310 PPLO60437 1756 aa28.07■■■□□ 2.08
UPF1-209ENST00000600310 NEUROD1Q13562 356 aa28.07■■■□□ 2.08
UPF1-209ENST00000600310 SENP3Q9H4L4 574 aaPredicted RBP28.07■■■□□ 2.08
UPF1-209ENST00000600310 TBX22Q9Y458 520 aa28.06■■■□□ 2.08
UPF1-209ENST00000600310 ADGRF5Q8IZF2 1346 aa28.06■■■□□ 2.08
UPF1-209ENST00000600310 ADAMTS13Q76LX8 1427 aa28.06■■■□□ 2.08
UPF1-209ENST00000600310 SETBP1Q9Y6X0 1596 aa28.04■■■□□ 2.08
UPF1-209ENST00000600310 CLSPNQ9HAW4 1339 aa28.04■■■□□ 2.08
UPF1-209ENST00000600310 STAC3Q96MF2 364 aa28.04■■■□□ 2.08
UPF1-209ENST00000600310 IFT172Q9UG01 1749 aa28.03■■■□□ 2.08
UPF1-209ENST00000600310 MYOM2P54296 1465 aa28.02■■■□□ 2.08
UPF1-209ENST00000600310 ZNF335Q9H4Z2 1342 aaPredicted RBP28.02■■■□□ 2.08
UPF1-209ENST00000600310 DCAF11Q8TEB1 546 aa28.02■■■□□ 2.08
UPF1-209ENST00000600310 NRXN3Q9Y4C0 1643 aa28■■■□□ 2.07
UPF1-209ENST00000600310 CCER1Q8TC90 406 aaPredicted RBP27.99■■■□□ 2.07
UPF1-209ENST00000600310 KDM2AQ9Y2K7 1162 aa27.99■■■□□ 2.07
UPF1-209ENST00000600310 DIP2AQ14689 1571 aa27.99■■■□□ 2.07
UPF1-209ENST00000600310 NRXN1Q9ULB1 1477 aa27.98■■■□□ 2.07
UPF1-209ENST00000600310 L3MBTL2Q969R5 705 aa27.97■■■□□ 2.07
UPF1-209ENST00000600310 PIK3C2GO75747 1445 aa27.97■■■□□ 2.07
UPF1-209ENST00000600310 PIK3R4Q99570 1358 aa27.96■■■□□ 2.07
UPF1-209ENST00000600310 KCNA6P17658 529 aa27.94■■■□□ 2.06
UPF1-209ENST00000600310 LTBP4Q8N2S1 1624 aa27.93■■■□□ 2.06
UPF1-209ENST00000600310 ALKQ9UM73 1620 aa27.92■■■□□ 2.06
UPF1-209ENST00000600310 METP08581 1390 aa27.92■■■□□ 2.06
UPF1-209ENST00000600310 C14orf93Q9H972 538 aaKnown RBP27.92■■■□□ 2.06
UPF1-209ENST00000600310 TONSLQ96HA7 1378 aa27.88■■■□□ 2.05
UPF1-209ENST00000600310 CPS1P31327 1500 aa27.88■■■□□ 2.05
UPF1-209ENST00000600310 CFAP70Q5T0N1 1121 aa27.87■■■□□ 2.05
UPF1-209ENST00000600310 PTPRUQ92729 1446 aa27.86■■■□□ 2.05
UPF1-209ENST00000600310 NWD1Q149M9 1564 aa27.86■■■□□ 2.05
UPF1-209ENST00000600310 SETD1AO15047 1707 aaKnown RBP27.85■■■□□ 2.05
UPF1-209ENST00000600310 AMOTL2Q9Y2J4 779 aa27.85■■■□□ 2.05
UPF1-209ENST00000600310 STRCP1A6NGW2 1772 aa27.84■■■□□ 2.05
UPF1-209ENST00000600310 PRAG1Q86YV5 1406 aa27.84■■■□□ 2.05
UPF1-209ENST00000600310 CHD2O14647 1828 aaKnown RBP27.83■■■□□ 2.05
UPF1-209ENST00000600310 NKTRP30414 1462 aaKnown RBP27.82■■■□□ 2.04
UPF1-209ENST00000600310 TMEM132EQ6IEE7 984 aa27.8■■■□□ 2.04
UPF1-209ENST00000600310 TIMELESSQ9UNS1 1208 aa27.8■■■□□ 2.04
UPF1-209ENST00000600310 LAMC1P11047 1609 aa27.8■■■□□ 2.04
UPF1-209ENST00000600310 LRRC7Q96NW7 1537 aa27.79■■■□□ 2.04
UPF1-209ENST00000600310 ASXL1Q8IXJ9 1541 aa27.78■■■□□ 2.04
UPF1-209ENST00000600310 PROSER2Q86WR7 435 aaPredicted RBP27.78■■■□□ 2.04
UPF1-209ENST00000600310 IQSEC2Q5JU85 1478 aa27.76■■■□□ 2.04
UPF1-209ENST00000600310 LRPPRCP42704 1394 aaKnown RBP27.76■■■□□ 2.03
UPF1-209ENST00000600310 XRN1Q8IZH2 1706 aaKnown RBP27.76■■■□□ 2.03
UPF1-209ENST00000600310 TMEM94Q12767 1356 aa27.73■■■□□ 2.03
UPF1-209ENST00000600310 ABCC11Q96J66 1382 aa27.73■■■□□ 2.03
UPF1-209ENST00000600310 ADGRB1O14514 1584 aa27.73■■■□□ 2.03
UPF1-209ENST00000600310 NBPF8Q3BBV2 869 aa27.73■■■□□ 2.03
UPF1-209ENST00000600310 YTHDC2Q9H6S0 1430 aaKnown RBP27.73■■■□□ 2.03
UPF1-209ENST00000600310 STK26Q9P289 416 aa27.72■■■□□ 2.03
UPF1-209ENST00000600310 TECPR2O15040 1411 aa27.71■■■□□ 2.03
UPF1-209ENST00000600310 PTCH1Q13635 1447 aa27.71■■■□□ 2.03
UPF1-209ENST00000600310 RBM33Q96EV2 1170 aaKnown RBP27.7■■■□□ 2.02
UPF1-209ENST00000600310 ROBO2Q9HCK4 1378 aa27.7■■■□□ 2.02
UPF1-209ENST00000600310 KIAA1210Q9ULL0 1709 aa27.7■■■□□ 2.02
UPF1-209ENST00000600310 NCOA3Q9Y6Q9 1424 aa27.69■■■□□ 2.02
UPF1-209ENST00000600310 NBPF1Q3BBV0 1214 aa27.69■■■□□ 2.02
UPF1-209ENST00000600310 SIRT1Q96EB6 747 aa27.68■■■□□ 2.02
UPF1-209ENST00000600310 KNDC1Q76NI1 1749 aa27.62■■■□□ 2.01
UPF1-209ENST00000600310 FAM135BQ49AJ0 1406 aa27.62■■■□□ 2.01
UPF1-209ENST00000600310 TRAK1Q9UPV9 953 aa27.62■■■□□ 2.01
UPF1-209ENST00000600310 TRPM1Q7Z4N2 1603 aa27.62■■■□□ 2.01
UPF1-209ENST00000600310 XIRP1Q702N8 1843 aaKnown RBP27.61■■■□□ 2.01
UPF1-209ENST00000600310 DLC1Q96QB1 1528 aa27.61■■■□□ 2.01
UPF1-209ENST00000600310 ROCK2O75116 1388 aaKnown RBP27.6■■■□□ 2.01
UPF1-209ENST00000600310 WAPLQ7Z5K2 1190 aa27.6■■■□□ 2.01
UPF1-209ENST00000600310 C14orf37Q86TY3 774 aa27.6■■■□□ 2.01
UPF1-209ENST00000600310 DISP3Q9P2K9 1392 aa27.6■■■□□ 2.01
UPF1-209ENST00000600310 C19orf44Q9H6X5 657 aa27.59■■■□□ 2.01
UPF1-209ENST00000600310 MSH6P52701 1360 aa27.59■■■□□ 2.01
UPF1-209ENST00000600310 GPRASP1Q5JY77 1395 aa27.59■■■□□ 2.01
UPF1-209ENST00000600310 RALGAPBQ86X10 1494 aa27.58■■■□□ 2.01
UPF1-209ENST00000600310 PLEKHH1Q9ULM0 1364 aa27.58■■■□□ 2.01
UPF1-209ENST00000600310 PRAM1Q96QH2 718 aa27.57■■■□□ 2
UPF1-209ENST00000600310 ADGRL3Q9HAR2 1447 aa27.56■■■□□ 2
UPF1-209ENST00000600310 UBAP1LF5GYI3 381 aa27.55■■■□□ 2
UPF1-209ENST00000600310 TOM1O60784 492 aa27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms