RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 RGL3Q3MIN7 710 aa24.21■■□□□ 1.47
USHBP1-210ENST00000600286 TXNDC2Q86VQ3 553 aa24.21■■□□□ 1.47
USHBP1-210ENST00000600286 STRCP1A6NGW2 1772 aa24.21■■□□□ 1.47
USHBP1-210ENST00000600286 ADGRB3O60242 1522 aa24.2■■□□□ 1.47
USHBP1-210ENST00000600286 RPGRIP1LQ68CZ1 1315 aa24.2■■□□□ 1.46
USHBP1-210ENST00000600286 TMEM2Q9UHN6 1383 aa24.19■■□□□ 1.46
USHBP1-210ENST00000600286 NEUROD1Q13562 356 aa24.19■■□□□ 1.46
USHBP1-210ENST00000600286 CLTCL1P53675 1640 aa24.19■■□□□ 1.46
USHBP1-210ENST00000600286 ARHGAP23Q9P227 1491 aa24.19■■□□□ 1.46
USHBP1-210ENST00000600286 KDM5AP29375 1690 aaKnown RBP24.18■■□□□ 1.46
USHBP1-210ENST00000600286 CLSPNQ9HAW4 1339 aa24.18■■□□□ 1.46
USHBP1-210ENST00000600286 SLIT1O75093 1534 aa24.18■■□□□ 1.46
USHBP1-210ENST00000600286 CPS1P31327 1500 aa24.18■■□□□ 1.46
USHBP1-210ENST00000600286 NPHP4O75161 1426 aaPredicted RBP24.18■■□□□ 1.46
USHBP1-210ENST00000600286 BCANQ96GW7 911 aa24.16■■□□□ 1.46
USHBP1-210ENST00000600286 VGFO15240 615 aaPredicted RBP24.15■■□□□ 1.46
USHBP1-210ENST00000600286 KIF1BO60333 1816 aa24.14■■□□□ 1.46
USHBP1-210ENST00000600286 TMEM131LA2VDJ0 1609 aa24.14■■□□□ 1.46
USHBP1-210ENST00000600286 SIN3AQ96ST3 1273 aa24.14■■□□□ 1.45
USHBP1-210ENST00000600286 RIMS2Q9UQ26 1411 aa24.14■■□□□ 1.45
USHBP1-210ENST00000600286 STAC3Q96MF2 364 aa24.12■■□□□ 1.45
USHBP1-210ENST00000600286 ALKQ9UM73 1620 aa24.12■■□□□ 1.45
USHBP1-210ENST00000600286 LTKP29376 864 aa24.1■■□□□ 1.45
USHBP1-210ENST00000600286 SPATA31E1Q6ZUB1 1445 aa24.1■■□□□ 1.45
USHBP1-210ENST00000600286 SCAF11Q99590 1463 aaKnown RBP24.09■■□□□ 1.45
USHBP1-210ENST00000600286 NUTM2DQ5VT03 806 aaPredicted RBP24.09■■□□□ 1.45
USHBP1-210ENST00000600286 DCAF11Q8TEB1 546 aa24.07■■□□□ 1.44
USHBP1-210ENST00000600286 ZFYVE9O95405 1425 aa24.05■■□□□ 1.44
USHBP1-210ENST00000600286 KDM2AQ9Y2K7 1162 aa24.04■■□□□ 1.44
USHBP1-210ENST00000600286 XIRP1Q702N8 1843 aaKnown RBP24.04■■□□□ 1.44
USHBP1-210ENST00000600286 TONSLQ96HA7 1378 aa24.03■■□□□ 1.44
USHBP1-210ENST00000600286 LRRC7Q96NW7 1537 aa24.02■■□□□ 1.44
USHBP1-210ENST00000600286 UBAP1LF5GYI3 381 aa24.02■■□□□ 1.44
USHBP1-210ENST00000600286 MYO5BQ9ULV0 1848 aa24.02■■□□□ 1.44
USHBP1-210ENST00000600286 PLEKHG1Q9ULL1 1385 aa24.02■■□□□ 1.44
USHBP1-210ENST00000600286 TIMELESSQ9UNS1 1208 aa24■■□□□ 1.43
USHBP1-210ENST00000600286 L3MBTL2Q969R5 705 aa23.99■■□□□ 1.43
USHBP1-210ENST00000600286 SENP3Q9H4L4 574 aaPredicted RBP23.98■■□□□ 1.43
USHBP1-210ENST00000600286 NEXMIFQ5QGS0 1516 aa23.98■■□□□ 1.43
USHBP1-210ENST00000600286 SLC26A8Q96RN1 970 aa23.96■■□□□ 1.43
USHBP1-210ENST00000600286 ADGRF5Q8IZF2 1346 aa23.95■■□□□ 1.42
USHBP1-210ENST00000600286 TBX22Q9Y458 520 aa23.95■■□□□ 1.42
USHBP1-210ENST00000600286 MYOM2P54296 1465 aa23.91■■□□□ 1.42
USHBP1-210ENST00000600286 PPLO60437 1756 aa23.89■■□□□ 1.42
USHBP1-210ENST00000600286 TOM1O60784 492 aa23.89■■□□□ 1.41
USHBP1-210ENST00000600286 DISP3Q9P2K9 1392 aa23.89■■□□□ 1.41
USHBP1-210ENST00000600286 NWD1Q149M9 1564 aa23.87■■□□□ 1.41
USHBP1-210ENST00000600286 ILDR2Q71H61 639 aa23.87■■□□□ 1.41
USHBP1-210ENST00000600286 C14orf93Q9H972 538 aaKnown RBP23.86■■□□□ 1.41
USHBP1-210ENST00000600286 SETBP1Q9Y6X0 1596 aa23.84■■□□□ 1.41
USHBP1-210ENST00000600286 PIK3R4Q99570 1358 aa23.84■■□□□ 1.41
USHBP1-210ENST00000600286 HSPA1LP34931 641 aa23.84■■□□□ 1.41
USHBP1-210ENST00000600286 CFAP70Q5T0N1 1121 aa23.84■■□□□ 1.41
USHBP1-210ENST00000600286 PIK3C2GO75747 1445 aa23.84■■□□□ 1.41
USHBP1-210ENST00000600286 ADAMTS13Q76LX8 1427 aa23.84■■□□□ 1.41
USHBP1-210ENST00000600286 DIP2AQ14689 1571 aa23.83■■□□□ 1.41
USHBP1-210ENST00000600286 CHD2O14647 1828 aaKnown RBP23.83■■□□□ 1.41
USHBP1-210ENST00000600286 KCNA6P17658 529 aa23.83■■□□□ 1.41
USHBP1-210ENST00000600286 NRXN1Q9ULB1 1477 aa23.82■■□□□ 1.4
USHBP1-210ENST00000600286 IFT172Q9UG01 1749 aa23.82■■□□□ 1.4
USHBP1-210ENST00000600286 PIP4K2BP78356 416 aa23.81■■□□□ 1.4
USHBP1-210ENST00000600286 PRAG1Q86YV5 1406 aa23.79■■□□□ 1.4
USHBP1-210ENST00000600286 AMOTL2Q9Y2J4 779 aa23.79■■□□□ 1.4
USHBP1-210ENST00000600286 TMEM132EQ6IEE7 984 aa23.77■■□□□ 1.4
USHBP1-210ENST00000600286 MED1Q15648 1581 aaPredicted RBP23.77■■□□□ 1.4
USHBP1-210ENST00000600286 METP08581 1390 aa23.77■■□□□ 1.4
USHBP1-210ENST00000600286 NKTRP30414 1462 aaKnown RBP23.76■■□□□ 1.39
USHBP1-210ENST00000600286 STK26Q9P289 416 aa23.75■■□□□ 1.39
USHBP1-210ENST00000600286 PROSER2Q86WR7 435 aaPredicted RBP23.74■■□□□ 1.39
USHBP1-210ENST00000600286 SCAF1Q9H7N4 1312 aaKnown RBP23.73■■□□□ 1.39
USHBP1-210ENST00000600286 TMEM94Q12767 1356 aa23.73■■□□□ 1.39
USHBP1-210ENST00000600286 NRXN3Q9Y4C0 1643 aa23.73■■□□□ 1.39
USHBP1-210ENST00000600286 NBPF8Q3BBV2 869 aa23.72■■□□□ 1.39
USHBP1-210ENST00000600286 LAMC1P11047 1609 aa23.72■■□□□ 1.39
USHBP1-210ENST00000600286 ROCK2O75116 1388 aaKnown RBP23.7■■□□□ 1.38
USHBP1-210ENST00000600286 LRPPRCP42704 1394 aaKnown RBP23.7■■□□□ 1.38
USHBP1-210ENST00000600286 NBPF1Q3BBV0 1214 aa23.69■■□□□ 1.38
USHBP1-210ENST00000600286 ABCC11Q96J66 1382 aa23.68■■□□□ 1.38
USHBP1-210ENST00000600286 FAM135BQ49AJ0 1406 aa23.67■■□□□ 1.38
USHBP1-210ENST00000600286 YTHDC2Q9H6S0 1430 aaKnown RBP23.67■■□□□ 1.38
USHBP1-210ENST00000600286 ZEB1P37275 1124 aaPredicted RBP23.67■■□□□ 1.38
USHBP1-210ENST00000600286 C14orf37Q86TY3 774 aa23.67■■□□□ 1.38
USHBP1-210ENST00000600286 CARD11Q9BXL7 1154 aa23.67■■□□□ 1.38
USHBP1-210ENST00000600286 TRAK1Q9UPV9 953 aa23.67■■□□□ 1.38
USHBP1-210ENST00000600286 SIRT1Q96EB6 747 aa23.66■■□□□ 1.38
USHBP1-210ENST00000600286 POGKQ9P215 609 aa23.66■■□□□ 1.38
USHBP1-210ENST00000600286 PTPRUQ92729 1446 aa23.66■■□□□ 1.38
USHBP1-210ENST00000600286 ROBO1Q9Y6N7 1651 aa23.65■■□□□ 1.38
USHBP1-210ENST00000600286 KIAA1210Q9ULL0 1709 aa23.64■■□□□ 1.38
USHBP1-210ENST00000600286 SOCS7O14512 581 aa23.64■■□□□ 1.37
USHBP1-210ENST00000600286 RBM33Q96EV2 1170 aaKnown RBP23.61■■□□□ 1.37
USHBP1-210ENST00000600286 SETD1AO15047 1707 aaKnown RBP23.6■■□□□ 1.37
USHBP1-210ENST00000600286 RALGAPBQ86X10 1494 aa23.6■■□□□ 1.37
USHBP1-210ENST00000600286 PTCH1Q13635 1447 aa23.59■■□□□ 1.37
USHBP1-210ENST00000600286 NCOA3Q9Y6Q9 1424 aa23.59■■□□□ 1.37
USHBP1-210ENST00000600286 XRN1Q8IZH2 1706 aaKnown RBP23.59■■□□□ 1.37
USHBP1-210ENST00000600286 PRAM1Q96QH2 718 aa23.59■■□□□ 1.37
USHBP1-210ENST00000600286 EIF3AQ14152 1382 aaKnown RBP23.59■■□□□ 1.37
USHBP1-210ENST00000600286 ADGRB1O14514 1584 aa23.59■■□□□ 1.37
USHBP1-210ENST00000600286 TECPR2O15040 1411 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms