RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 RIMS2Q9UQ26 1411 aa23.95■■□□□ 1.42
VRK3-221ENST00000600284 PLEKHG1Q9ULL1 1385 aa23.94■■□□□ 1.42
VRK3-221ENST00000600284 ALKQ9UM73 1620 aa23.93■■□□□ 1.42
VRK3-221ENST00000600284 PPP1R15AO75807 674 aaPredicted RBP23.93■■□□□ 1.42
VRK3-221ENST00000600284 CHGAP10645 457 aaKnown RBP23.93■■□□□ 1.42
VRK3-221ENST00000600284 HSPA1LP34931 641 aa23.93■■□□□ 1.42
VRK3-221ENST00000600284 BCANQ96GW7 911 aa23.93■■□□□ 1.42
VRK3-221ENST00000600284 NAIPQ13075 1403 aa23.92■■□□□ 1.42
VRK3-221ENST00000600284 MYO5BQ9ULV0 1848 aa23.89■■□□□ 1.42
VRK3-221ENST00000600284 TBX22Q9Y458 520 aa23.88■■□□□ 1.41
VRK3-221ENST00000600284 PROSER2Q86WR7 435 aaPredicted RBP23.87■■□□□ 1.41
VRK3-221ENST00000600284 TMEM94Q12767 1356 aa23.87■■□□□ 1.41
VRK3-221ENST00000600284 HFM1A2PYH4 1435 aa23.86■■□□□ 1.41
VRK3-221ENST00000600284 NKTRP30414 1462 aaKnown RBP23.86■■□□□ 1.41
VRK3-221ENST00000600284 XIRP1Q702N8 1843 aaKnown RBP23.84■■□□□ 1.41
VRK3-221ENST00000600284 NWD1Q149M9 1564 aa23.84■■□□□ 1.41
VRK3-221ENST00000600284 SPHKAPQ2M3C7 1700 aa23.81■■□□□ 1.4
VRK3-221ENST00000600284 PIK3R4Q99570 1358 aa23.8■■□□□ 1.4
VRK3-221ENST00000600284 NUTM2DQ5VT03 806 aaPredicted RBP23.8■■□□□ 1.4
VRK3-221ENST00000600284 ADAMTS13Q76LX8 1427 aa23.79■■□□□ 1.4
VRK3-221ENST00000600284 ILDR2Q71H61 639 aa23.79■■□□□ 1.4
VRK3-221ENST00000600284 SENP3Q9H4L4 574 aaPredicted RBP23.79■■□□□ 1.4
VRK3-221ENST00000600284 DIP2AQ14689 1571 aa23.78■■□□□ 1.4
VRK3-221ENST00000600284 FAM135BQ49AJ0 1406 aa23.78■■□□□ 1.4
VRK3-221ENST00000600284 CHD2O14647 1828 aaKnown RBP23.78■■□□□ 1.4
VRK3-221ENST00000600284 TRIM52Q96A61 297 aa23.78■■□□□ 1.4
VRK3-221ENST00000600284 NCOA3Q9Y6Q9 1424 aa23.76■■□□□ 1.39
VRK3-221ENST00000600284 TRPM2O94759 1503 aa23.75■■□□□ 1.39
VRK3-221ENST00000600284 ZNF326Q5BKZ1 582 aaKnown RBP23.75■■□□□ 1.39
VRK3-221ENST00000600284 RBM33Q96EV2 1170 aaKnown RBP23.75■■□□□ 1.39
VRK3-221ENST00000600284 MSH6P52701 1360 aa23.75■■□□□ 1.39
VRK3-221ENST00000600284 SLC4A1APQ9BWU0 796 aaKnown RBP23.73■■□□□ 1.39
VRK3-221ENST00000600284 CLTCL1P53675 1640 aa23.7■■□□□ 1.38
VRK3-221ENST00000600284 SLAIN2Q9P270 581 aa23.69■■□□□ 1.38
VRK3-221ENST00000600284 MED1Q15648 1581 aaPredicted RBP23.69■■□□□ 1.38
VRK3-221ENST00000600284 AMOTL2Q9Y2J4 779 aa23.68■■□□□ 1.38
VRK3-221ENST00000600284 SETBP1Q9Y6X0 1596 aa23.68■■□□□ 1.38
VRK3-221ENST00000600284 SOCS7O14512 581 aa23.67■■□□□ 1.38
VRK3-221ENST00000600284 ACIN1Q9UKV3 1341 aaKnown RBP23.66■■□□□ 1.38
VRK3-221ENST00000600284 C19orf44Q9H6X5 657 aa23.66■■□□□ 1.38
VRK3-221ENST00000600284 NEXMIFQ5QGS0 1516 aa23.64■■□□□ 1.38
VRK3-221ENST00000600284 RPGRIP1LQ68CZ1 1315 aa23.64■■□□□ 1.38
VRK3-221ENST00000600284 KIF1BO60333 1816 aa23.64■■□□□ 1.38
VRK3-221ENST00000600284 PTPRUQ92729 1446 aa23.64■■□□□ 1.37
VRK3-221ENST00000600284 NRXN3Q9Y4C0 1643 aa23.63■■□□□ 1.37
VRK3-221ENST00000600284 VGFO15240 615 aaPredicted RBP23.63■■□□□ 1.37
VRK3-221ENST00000600284 C14orf37Q86TY3 774 aa23.63■■□□□ 1.37
VRK3-221ENST00000600284 CADPS2Q86UW7 1296 aa23.63■■□□□ 1.37
VRK3-221ENST00000600284 ROBO1Q9Y6N7 1651 aa23.62■■□□□ 1.37
VRK3-221ENST00000600284 ATF3P18847 181 aa23.59■■□□□ 1.37
VRK3-221ENST00000600284 PHF23Q9BUL5 403 aaPredicted RBP23.59■■□□□ 1.37
VRK3-221ENST00000600284 METP08581 1390 aa23.59■■□□□ 1.37
VRK3-221ENST00000600284 MPHOSPH9Q99550 1183 aa23.58■■□□□ 1.37
VRK3-221ENST00000600284 XRN1Q8IZH2 1706 aaKnown RBP23.56■■□□□ 1.36
VRK3-221ENST00000600284 FOXD1Q16676 465 aa23.55■■□□□ 1.36
VRK3-221ENST00000600284 DCCP43146 1447 aa23.55■■□□□ 1.36
VRK3-221ENST00000600284 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.55■■□□□ 1.36
VRK3-221ENST00000600284 CCDC144AA2RUR9 1427 aa23.53■■□□□ 1.36
VRK3-221ENST00000600284 SETD5Q9C0A6 1442 aa23.53■■□□□ 1.36
VRK3-221ENST00000600284 JCADQ9P266 1359 aa23.48■■□□□ 1.35
VRK3-221ENST00000600284 PHLPP1O60346 1717 aa23.47■■□□□ 1.35
VRK3-221ENST00000600284 PPLO60437 1756 aa23.46■■□□□ 1.35
VRK3-221ENST00000600284 SPATA31E1Q6ZUB1 1445 aa23.46■■□□□ 1.35
VRK3-221ENST00000600284 PTCH1Q13635 1447 aa23.45■■□□□ 1.34
VRK3-221ENST00000600284 PRAG1Q86YV5 1406 aa23.45■■□□□ 1.34
VRK3-221ENST00000600284 ADGRL3Q9HAR2 1447 aa23.45■■□□□ 1.34
VRK3-221ENST00000600284 ANKRD30BQ9BXX2 1392 aa23.45■■□□□ 1.34
VRK3-221ENST00000600284 BRINP3Q76B58 766 aa23.45■■□□□ 1.34
VRK3-221ENST00000600284 RGL3Q3MIN7 710 aa23.43■■□□□ 1.34
VRK3-221ENST00000600284 RGS17Q9UGC6 210 aaPredicted RBP23.43■■□□□ 1.34
VRK3-221ENST00000600284 AHDC1Q5TGY3 1603 aaPredicted RBP23.43■■□□□ 1.34
VRK3-221ENST00000600284 MST1RQ04912 1400 aa23.42■■□□□ 1.34
VRK3-221ENST00000600284 SETD1AO15047 1707 aaKnown RBP23.42■■□□□ 1.34
VRK3-221ENST00000600284 COL16A1Q07092 1604 aaPredicted RBP23.42■■□□□ 1.34
VRK3-221ENST00000600284 RAB3GAP2Q9H2M9 1393 aa23.4■■□□□ 1.34
VRK3-221ENST00000600284 ADGRF5Q8IZF2 1346 aa23.4■■□□□ 1.34
VRK3-221ENST00000600284 ROBO2Q9HCK4 1378 aa23.4■■□□□ 1.34
VRK3-221ENST00000600284 SPATA31A6Q5VVP1 1343 aa23.39■■□□□ 1.34
VRK3-221ENST00000600284 HRCP23327 699 aa23.38■■□□□ 1.33
VRK3-221ENST00000600284 ASXL1Q8IXJ9 1541 aa23.36■■□□□ 1.33
VRK3-221ENST00000600284 NALCNQ8IZF0 1738 aa23.34■■□□□ 1.33
VRK3-221ENST00000600284 IFT172Q9UG01 1749 aa23.33■■□□□ 1.32
VRK3-221ENST00000600284 C1orf167Q5SNV9 1468 aa23.32■■□□□ 1.32
VRK3-221ENST00000600284 LRRC59Q96AG4 307 aaKnown RBP23.32■■□□□ 1.32
VRK3-221ENST00000600284 PIK3C2GO75747 1445 aa23.32■■□□□ 1.32
VRK3-221ENST00000600284 LRPPRCP42704 1394 aaKnown RBP23.3■■□□□ 1.32
VRK3-221ENST00000600284 ABCC11Q96J66 1382 aa23.3■■□□□ 1.32
VRK3-221ENST00000600284 SHPRHQ149N8 1683 aa23.3■■□□□ 1.32
VRK3-221ENST00000600284 TECPR2O15040 1411 aa23.3■■□□□ 1.32
VRK3-221ENST00000600284 POTEAQ6S8J7 498 aa23.29■■□□□ 1.32
VRK3-221ENST00000600284 NHSL1Q5SYE7 1610 aa23.29■■□□□ 1.32
VRK3-221ENST00000600284 C14orf93Q9H972 538 aaKnown RBP23.27■■□□□ 1.32
VRK3-221ENST00000600284 NRXN1Q9ULB1 1477 aa23.26■■□□□ 1.31
VRK3-221ENST00000600284 MEX3CQ5U5Q3 659 aaKnown RBP23.26■■□□□ 1.31
VRK3-221ENST00000600284 TMEM132EQ6IEE7 984 aa23.26■■□□□ 1.31
VRK3-221ENST00000600284 SIRT1Q96EB6 747 aa23.26■■□□□ 1.31
VRK3-221ENST00000600284 STK26Q9P289 416 aa23.26■■□□□ 1.31
VRK3-221ENST00000600284 LRP6O75581 1613 aa23.26■■□□□ 1.31
VRK3-221ENST00000600284 MYOM2P54296 1465 aa23.25■■□□□ 1.31
VRK3-221ENST00000600284 ORAI2Q96SN7 254 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms