RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MYO5BQ9ULV0 1848 aa19.19■□□□□ 0.66
UPF1-208ENST00000600012 NWD1Q149M9 1564 aa19.19■□□□□ 0.66
UPF1-208ENST00000600012 NKTRP30414 1462 aaKnown RBP19.18■□□□□ 0.66
UPF1-208ENST00000600012 FAM135BQ49AJ0 1406 aa19.17■□□□□ 0.66
UPF1-208ENST00000600012 SLC26A8Q96RN1 970 aa19.17■□□□□ 0.66
UPF1-208ENST00000600012 UNC13BO14795 1591 aa19.17■□□□□ 0.66
UPF1-208ENST00000600012 PROSER2Q86WR7 435 aaPredicted RBP19.15■□□□□ 0.66
UPF1-208ENST00000600012 ZFYVE9O95405 1425 aa19.15■□□□□ 0.66
UPF1-208ENST00000600012 TMEM131LA2VDJ0 1609 aa19.14■□□□□ 0.66
UPF1-208ENST00000600012 BCANQ96GW7 911 aa19.13■□□□□ 0.65
UPF1-208ENST00000600012 PLEKHG1Q9ULL1 1385 aa19.13■□□□□ 0.65
UPF1-208ENST00000600012 ROBO1Q9Y6N7 1651 aa19.13■□□□□ 0.65
UPF1-208ENST00000600012 CHD2O14647 1828 aaKnown RBP19.12■□□□□ 0.65
UPF1-208ENST00000600012 E9PCH4 1651 aa19.11■□□□□ 0.65
UPF1-208ENST00000600012 RIMS2Q9UQ26 1411 aa19.11■□□□□ 0.65
UPF1-208ENST00000600012 HDGFP51858 240 aaKnown RBP19.11■□□□□ 0.65
UPF1-208ENST00000600012 ROCK1Q13464 1354 aa19.1■□□□□ 0.65
UPF1-208ENST00000600012 IQGAP3Q86VI3 1631 aa19.1■□□□□ 0.65
UPF1-208ENST00000600012 MSH6P52701 1360 aa19.09■□□□□ 0.65
UPF1-208ENST00000600012 PPP1R15AO75807 674 aaPredicted RBP19.09■□□□□ 0.65
UPF1-208ENST00000600012 RBM33Q96EV2 1170 aaKnown RBP19.08■□□□□ 0.64
UPF1-208ENST00000600012 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.06■□□□□ 0.64
UPF1-208ENST00000600012 DIP2AQ14689 1571 aa19.05■□□□□ 0.64
UPF1-208ENST00000600012 CHGAP10645 457 aaKnown RBP19.04■□□□□ 0.64
UPF1-208ENST00000600012 TBX22Q9Y458 520 aa19.04■□□□□ 0.64
UPF1-208ENST00000600012 RGS17Q9UGC6 210 aaPredicted RBP19.03■□□□□ 0.64
UPF1-208ENST00000600012 PHLPP1O60346 1717 aa19.03■□□□□ 0.64
UPF1-208ENST00000600012 NCOA3Q9Y6Q9 1424 aa19.02■□□□□ 0.64
UPF1-208ENST00000600012 ADAMTS13Q76LX8 1427 aa19.01■□□□□ 0.63
UPF1-208ENST00000600012 SLAIN2Q9P270 581 aa19.01■□□□□ 0.63
UPF1-208ENST00000600012 NUP155O75694 1391 aa19.01■□□□□ 0.63
UPF1-208ENST00000600012 PIK3R4Q99570 1358 aa19■□□□□ 0.63
UPF1-208ENST00000600012 ITGAEP38570 1179 aa18.99■□□□□ 0.63
UPF1-208ENST00000600012 TRPM2O94759 1503 aa18.98■□□□□ 0.63
UPF1-208ENST00000600012 SPHKAPQ2M3C7 1700 aa18.97■□□□□ 0.63
UPF1-208ENST00000600012 NUTM2DQ5VT03 806 aaPredicted RBP18.97■□□□□ 0.63
UPF1-208ENST00000600012 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.97■□□□□ 0.63
UPF1-208ENST00000600012 JCADQ9P266 1359 aa18.96■□□□□ 0.63
UPF1-208ENST00000600012 C14orf37Q86TY3 774 aa18.96■□□□□ 0.63
UPF1-208ENST00000600012 COL16A1Q07092 1604 aaPredicted RBP18.96■□□□□ 0.63
UPF1-208ENST00000600012 CADPS2Q86UW7 1296 aa18.93■□□□□ 0.62
UPF1-208ENST00000600012 POTEAQ6S8J7 498 aa18.92■□□□□ 0.62
UPF1-208ENST00000600012 C19orf44Q9H6X5 657 aa18.92■□□□□ 0.62
UPF1-208ENST00000600012 SETBP1Q9Y6X0 1596 aa18.91■□□□□ 0.62
UPF1-208ENST00000600012 ATF3P18847 181 aa18.91■□□□□ 0.62
UPF1-208ENST00000600012 AHDC1Q5TGY3 1603 aaPredicted RBP18.91■□□□□ 0.62
UPF1-208ENST00000600012 NRXN3Q9Y4C0 1643 aa18.91■□□□□ 0.62
UPF1-208ENST00000600012 XRN1Q8IZH2 1706 aaKnown RBP18.9■□□□□ 0.62
UPF1-208ENST00000600012 PTPRUQ92729 1446 aa18.9■□□□□ 0.62
UPF1-208ENST00000600012 AMOTL2Q9Y2J4 779 aa18.89■□□□□ 0.61
UPF1-208ENST00000600012 DCCP43146 1447 aa18.88■□□□□ 0.61
UPF1-208ENST00000600012 SHPRHQ149N8 1683 aa18.88■□□□□ 0.61
UPF1-208ENST00000600012 SPATA31A6Q5VVP1 1343 aa18.87■□□□□ 0.61
UPF1-208ENST00000600012 CLTCL1P53675 1640 aa18.85■□□□□ 0.61
UPF1-208ENST00000600012 ZNF326Q5BKZ1 582 aaKnown RBP18.85■□□□□ 0.61
UPF1-208ENST00000600012 KIF1BO60333 1816 aa18.84■□□□□ 0.61
UPF1-208ENST00000600012 LRP6O75581 1613 aa18.84■□□□□ 0.61
UPF1-208ENST00000600012 NEXMIFQ5QGS0 1516 aa18.83■□□□□ 0.6
UPF1-208ENST00000600012 BRINP3Q76B58 766 aa18.82■□□□□ 0.6
UPF1-208ENST00000600012 SETD1AO15047 1707 aaKnown RBP18.82■□□□□ 0.6
UPF1-208ENST00000600012 NAIPQ13075 1403 aa18.81■□□□□ 0.6
UPF1-208ENST00000600012 METP08581 1390 aa18.81■□□□□ 0.6
UPF1-208ENST00000600012 ASXL1Q8IXJ9 1541 aa18.8■□□□□ 0.6
UPF1-208ENST00000600012 MEX3CQ5U5Q3 659 aaKnown RBP18.8■□□□□ 0.6
UPF1-208ENST00000600012 NHSL1Q5SYE7 1610 aa18.79■□□□□ 0.6
UPF1-208ENST00000600012 MST1RQ04912 1400 aa18.79■□□□□ 0.6
UPF1-208ENST00000600012 ADGRL3Q9HAR2 1447 aa18.78■□□□□ 0.6
UPF1-208ENST00000600012 NALCNQ8IZF0 1738 aa18.77■□□□□ 0.6
UPF1-208ENST00000600012 HFM1A2PYH4 1435 aa18.77■□□□□ 0.6
UPF1-208ENST00000600012 ZNF772Q68DY9 489 aaPredicted RBP18.77■□□□□ 0.6
UPF1-208ENST00000600012 SETD5Q9C0A6 1442 aa18.76■□□□□ 0.59
UPF1-208ENST00000600012 RAB3GAP2Q9H2M9 1393 aa18.74■□□□□ 0.59
UPF1-208ENST00000600012 PTCH1Q13635 1447 aa18.73■□□□□ 0.59
UPF1-208ENST00000600012 NUTM2BA6NNL0 878 aaPredicted RBP18.71■□□□□ 0.59
UPF1-208ENST00000600012 NUTM2EB1AL46 878 aaPredicted RBP18.71■□□□□ 0.59
UPF1-208ENST00000600012 VGFO15240 615 aaPredicted RBP18.71■□□□□ 0.59
UPF1-208ENST00000600012 NUTM2AQ8IVF1 878 aaPredicted RBP18.71■□□□□ 0.59
UPF1-208ENST00000600012 TRIM52Q96A61 297 aa18.71■□□□□ 0.59
UPF1-208ENST00000600012 LRRC59Q96AG4 307 aaKnown RBP18.71■□□□□ 0.59
UPF1-208ENST00000600012 PPLO60437 1756 aa18.7■□□□□ 0.58
UPF1-208ENST00000600012 PRAG1Q86YV5 1406 aa18.69■□□□□ 0.58
UPF1-208ENST00000600012 RPGRIP1LQ68CZ1 1315 aa18.69■□□□□ 0.58
UPF1-208ENST00000600012 LAMC1P11047 1609 aa18.67■□□□□ 0.58
UPF1-208ENST00000600012 C1orf167Q5SNV9 1468 aa18.67■□□□□ 0.58
UPF1-208ENST00000600012 CDK12Q9NYV4 1490 aaPredicted RBP18.67■□□□□ 0.58
UPF1-208ENST00000600012 SLC4A1APQ9BWU0 796 aaKnown RBP18.67■□□□□ 0.58
UPF1-208ENST00000600012 PNPLA6Q8IY17 1366 aa18.67■□□□□ 0.58
UPF1-208ENST00000600012 RXRBP28702 533 aa18.66■□□□□ 0.58
UPF1-208ENST00000600012 AFF2P51816 1311 aa18.66■□□□□ 0.58
UPF1-208ENST00000600012 ROBO2Q9HCK4 1378 aa18.66■□□□□ 0.58
UPF1-208ENST00000600012 DDX17Q92841 729 aaKnown RBP18.64■□□□□ 0.57
UPF1-208ENST00000600012 UPF1Q92900 1129 aaKnown RBP eCLIP18.62■□□□□ 0.57
UPF1-208ENST00000600012 C8orf37Q96NL8 207 aa18.6■□□□□ 0.57
UPF1-208ENST00000600012 DHX57Q6P158 1386 aaKnown RBP18.59■□□□□ 0.57
UPF1-208ENST00000600012 SOS2Q07890 1332 aaPredicted RBP18.59■□□□□ 0.57
UPF1-208ENST00000600012 CDC42BPGQ6DT37 1551 aa18.59■□□□□ 0.57
UPF1-208ENST00000600012 CCDC144AA2RUR9 1427 aa18.58■□□□□ 0.57
UPF1-208ENST00000600012 HRCP23327 699 aa18.58■□□□□ 0.56
UPF1-208ENST00000600012 CCER1Q8TC90 406 aaPredicted RBP18.58■□□□□ 0.56
UPF1-208ENST00000600012 ORAI2Q96SN7 254 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms