RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 BCANQ96GW7 911 aa28.57■■■□□ 2.16
PNKP-213ENST00000599543 ZFYVE9O95405 1425 aa28.57■■■□□ 2.16
PNKP-213ENST00000599543 RIMS2Q9UQ26 1411 aa28.55■■■□□ 2.16
PNKP-213ENST00000599543 MED1Q15648 1581 aaPredicted RBP28.54■■■□□ 2.16
PNKP-213ENST00000599543 PPP1R15AO75807 674 aaPredicted RBP28.54■■■□□ 2.16
PNKP-213ENST00000599543 KCNA6P17658 529 aa28.54■■■□□ 2.16
PNKP-213ENST00000599543 NWD1Q149M9 1564 aa28.54■■■□□ 2.16
PNKP-213ENST00000599543 HDGFP51858 240 aaKnown RBP28.53■■■□□ 2.16
PNKP-213ENST00000599543 PLEKHG1Q9ULL1 1385 aa28.52■■■□□ 2.16
PNKP-213ENST00000599543 CHGAP10645 457 aaKnown RBP28.52■■■□□ 2.16
PNKP-213ENST00000599543 NKTRP30414 1462 aaKnown RBP28.52■■■□□ 2.16
PNKP-213ENST00000599543 TMEM94Q12767 1356 aa28.51■■■□□ 2.16
PNKP-213ENST00000599543 SENP3Q9H4L4 574 aaPredicted RBP28.5■■■□□ 2.15
PNKP-213ENST00000599543 RRBP1Q9P2E9 1410 aaKnown RBP28.5■■■□□ 2.15
PNKP-213ENST00000599543 SPHKAPQ2M3C7 1700 aa28.48■■■□□ 2.15
PNKP-213ENST00000599543 CHD2O14647 1828 aaKnown RBP28.48■■■□□ 2.15
PNKP-213ENST00000599543 SOCS7O14512 581 aa28.47■■■□□ 2.15
PNKP-213ENST00000599543 PROSER2Q86WR7 435 aaPredicted RBP28.46■■■□□ 2.15
PNKP-213ENST00000599543 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.46■■■□□ 2.15
PNKP-213ENST00000599543 DIP2AQ14689 1571 aa28.41■■■□□ 2.14
PNKP-213ENST00000599543 RBM33Q96EV2 1170 aaKnown RBP28.41■■■□□ 2.14
PNKP-213ENST00000599543 NUTM2DQ5VT03 806 aaPredicted RBP28.39■■■□□ 2.14
PNKP-213ENST00000599543 MSH6P52701 1360 aa28.38■■■□□ 2.13
PNKP-213ENST00000599543 FAM135BQ49AJ0 1406 aa28.38■■■□□ 2.13
PNKP-213ENST00000599543 ROBO1Q9Y6N7 1651 aa28.38■■■□□ 2.13
PNKP-213ENST00000599543 TBX22Q9Y458 520 aa28.37■■■□□ 2.13
PNKP-213ENST00000599543 NAIPQ13075 1403 aa28.36■■■□□ 2.13
PNKP-213ENST00000599543 ADAMTS13Q76LX8 1427 aa28.35■■■□□ 2.13
PNKP-213ENST00000599543 PHF23Q9BUL5 403 aaPredicted RBP28.34■■■□□ 2.13
PNKP-213ENST00000599543 TRPM2O94759 1503 aa28.32■■■□□ 2.12
PNKP-213ENST00000599543 PIK3R4Q99570 1358 aa28.31■■■□□ 2.12
PNKP-213ENST00000599543 CLTCL1P53675 1640 aa28.3■■■□□ 2.12
PNKP-213ENST00000599543 HFM1A2PYH4 1435 aa28.29■■■□□ 2.12
PNKP-213ENST00000599543 KIF1BO60333 1816 aa28.29■■■□□ 2.12
PNKP-213ENST00000599543 ZNF326Q5BKZ1 582 aaKnown RBP28.28■■■□□ 2.12
PNKP-213ENST00000599543 NCOA3Q9Y6Q9 1424 aa28.26■■■□□ 2.12
PNKP-213ENST00000599543 NRXN3Q9Y4C0 1643 aa28.26■■■□□ 2.11
PNKP-213ENST00000599543 SETBP1Q9Y6X0 1596 aa28.25■■■□□ 2.11
PNKP-213ENST00000599543 C14orf37Q86TY3 774 aa28.25■■■□□ 2.11
PNKP-213ENST00000599543 SLAIN2Q9P270 581 aa28.24■■■□□ 2.11
PNKP-213ENST00000599543 PHLPP1O60346 1717 aa28.23■■■□□ 2.11
PNKP-213ENST00000599543 TRIM52Q96A61 297 aa28.22■■■□□ 2.11
PNKP-213ENST00000599543 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.22■■■□□ 2.11
PNKP-213ENST00000599543 NEXMIFQ5QGS0 1516 aa28.2■■■□□ 2.1
PNKP-213ENST00000599543 XRN1Q8IZH2 1706 aaKnown RBP28.19■■■□□ 2.1
PNKP-213ENST00000599543 AMOTL2Q9Y2J4 779 aa28.19■■■□□ 2.1
PNKP-213ENST00000599543 PTPRUQ92729 1446 aa28.18■■■□□ 2.1
PNKP-213ENST00000599543 CADPS2Q86UW7 1296 aa28.15■■■□□ 2.1
PNKP-213ENST00000599543 C19orf44Q9H6X5 657 aa28.15■■■□□ 2.1
PNKP-213ENST00000599543 ATF3P18847 181 aa28.14■■■□□ 2.1
PNKP-213ENST00000599543 SLC4A1APQ9BWU0 796 aaKnown RBP28.14■■■□□ 2.1
PNKP-213ENST00000599543 METP08581 1390 aa28.11■■■□□ 2.09
PNKP-213ENST00000599543 COL16A1Q07092 1604 aaPredicted RBP28.1■■■□□ 2.09
PNKP-213ENST00000599543 DCCP43146 1447 aa28.09■■■□□ 2.09
PNKP-213ENST00000599543 JCADQ9P266 1359 aa28.07■■■□□ 2.08
PNKP-213ENST00000599543 AHDC1Q5TGY3 1603 aaPredicted RBP28.06■■■□□ 2.08
PNKP-213ENST00000599543 PPLO60437 1756 aa28.05■■■□□ 2.08
PNKP-213ENST00000599543 RGS17Q9UGC6 210 aaPredicted RBP28.04■■■□□ 2.08
PNKP-213ENST00000599543 SETD1AO15047 1707 aaKnown RBP28.04■■■□□ 2.08
PNKP-213ENST00000599543 VGFO15240 615 aaPredicted RBP28.03■■■□□ 2.08
PNKP-213ENST00000599543 NALCNQ8IZF0 1738 aa28.01■■■□□ 2.07
PNKP-213ENST00000599543 RPGRIP1LQ68CZ1 1315 aa28.01■■■□□ 2.07
PNKP-213ENST00000599543 ADGRL3Q9HAR2 1447 aa27.99■■■□□ 2.07
PNKP-213ENST00000599543 SHPRHQ149N8 1683 aa27.98■■■□□ 2.07
PNKP-213ENST00000599543 FOXD1Q16676 465 aa27.98■■■□□ 2.07
PNKP-213ENST00000599543 ASXL1Q8IXJ9 1541 aa27.97■■■□□ 2.07
PNKP-213ENST00000599543 BRINP3Q76B58 766 aa27.97■■■□□ 2.07
PNKP-213ENST00000599543 CCDC144AA2RUR9 1427 aa27.97■■■□□ 2.07
PNKP-213ENST00000599543 MST1RQ04912 1400 aa27.97■■■□□ 2.07
PNKP-213ENST00000599543 PTCH1Q13635 1447 aa27.95■■■□□ 2.07
PNKP-213ENST00000599543 SPATA31A6Q5VVP1 1343 aa27.93■■■□□ 2.06
PNKP-213ENST00000599543 NHSL1Q5SYE7 1610 aa27.93■■■□□ 2.06
PNKP-213ENST00000599543 MPHOSPH9Q99550 1183 aa27.91■■■□□ 2.06
PNKP-213ENST00000599543 IFT172Q9UG01 1749 aa27.89■■■□□ 2.06
PNKP-213ENST00000599543 LRP6O75581 1613 aa27.89■■■□□ 2.06
PNKP-213ENST00000599543 POTEAQ6S8J7 498 aa27.89■■■□□ 2.06
PNKP-213ENST00000599543 ROBO2Q9HCK4 1378 aa27.88■■■□□ 2.05
PNKP-213ENST00000599543 PRAG1Q86YV5 1406 aa27.88■■■□□ 2.05
PNKP-213ENST00000599543 MEX3CQ5U5Q3 659 aaKnown RBP27.87■■■□□ 2.05
PNKP-213ENST00000599543 ACIN1Q9UKV3 1341 aaKnown RBP27.86■■■□□ 2.05
PNKP-213ENST00000599543 SPATA31E1Q6ZUB1 1445 aa27.85■■■□□ 2.05
PNKP-213ENST00000599543 RGL3Q3MIN7 710 aa27.84■■■□□ 2.05
PNKP-213ENST00000599543 SETD5Q9C0A6 1442 aa27.84■■■□□ 2.05
PNKP-213ENST00000599543 ANKRD30BQ9BXX2 1392 aa27.83■■■□□ 2.05
PNKP-213ENST00000599543 C1orf167Q5SNV9 1468 aa27.82■■■□□ 2.04
PNKP-213ENST00000599543 ADGRF5Q8IZF2 1346 aa27.81■■■□□ 2.04
PNKP-213ENST00000599543 LRRC59Q96AG4 307 aaKnown RBP27.78■■■□□ 2.04
PNKP-213ENST00000599543 NUTM2BA6NNL0 878 aaPredicted RBP27.77■■■□□ 2.04
PNKP-213ENST00000599543 NUTM2EB1AL46 878 aaPredicted RBP27.77■■■□□ 2.04
PNKP-213ENST00000599543 NUTM2AQ8IVF1 878 aaPredicted RBP27.77■■■□□ 2.04
PNKP-213ENST00000599543 DDX17Q92841 729 aaKnown RBP27.77■■■□□ 2.04
PNKP-213ENST00000599543 LAMC1P11047 1609 aa27.77■■■□□ 2.04
PNKP-213ENST00000599543 ZNF772Q68DY9 489 aaPredicted RBP27.76■■■□□ 2.03
PNKP-213ENST00000599543 CDC42BPGQ6DT37 1551 aa27.75■■■□□ 2.03
PNKP-213ENST00000599543 KNDC1Q76NI1 1749 aa27.75■■■□□ 2.03
PNKP-213ENST00000599543 PIK3C2GO75747 1445 aa27.75■■■□□ 2.03
PNKP-213ENST00000599543 RAB3GAP2Q9H2M9 1393 aa27.73■■■□□ 2.03
PNKP-213ENST00000599543 TECPR2O15040 1411 aa27.72■■■□□ 2.03
PNKP-213ENST00000599543 PNPLA6Q8IY17 1366 aa27.71■■■□□ 2.03
PNKP-213ENST00000599543 ORAI2Q96SN7 254 aa27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms