RNA–Protein interactions for RNA: ENST00000599082.1

SOX2-OT-231, SOX2 overlapping transcript, human

TSL 5

Gene SOX2-OT, Length 839 nt, Biotype sense overlapping.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SOX2-OT-231	ENST00000599082	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.55	□□□□□ -0.24
SOX2-OT-231	ENST00000599082	SMAP	O00193	183 aa		13.54	□□□□□ -0.24
SOX2-OT-231	ENST00000599082	PLA2G2E	Q9NZK7	142 aa		13.54	□□□□□ -0.24
SOX2-OT-231	ENST00000599082	DNAJB2	P25686	324 aa		13.52	□□□□□ -0.25
SOX2-OT-231	ENST00000599082	RABGEF1	Q9UJ41	708 aa		13.52	□□□□□ -0.25
SOX2-OT-231	ENST00000599082	VPS9D1	Q9Y2B5	631 aa		13.5	□□□□□ -0.25
SOX2-OT-231	ENST00000599082	TMEM134	Q9H6X4	195 aa		13.49	□□□□□ -0.25
SOX2-OT-231	ENST00000599082	BEGAIN	Q9BUH8	593 aa		13.48	□□□□□ -0.25
SOX2-OT-231	ENST00000599082	HCST	Q9UBK5	93 aa		13.47	□□□□□ -0.25
SOX2-OT-231	ENST00000599082	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.45	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	GOPC	Q9HD26	462 aa		13.44	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	TK2	O00142	265 aa		13.42	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	CD46	P15529	392 aa		13.41	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	SULF1	Q8IWU6	871 aa		13.41	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	DDX11L8	A8MPP1	907 aa		13.4	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.4	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	SH3D19	Q5HYK7	790 aa		13.4	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	ADGRD1	Q6QNK2	874 aa		13.4	□□□□□ -0.26
SOX2-OT-231	ENST00000599082	FAM98C	Q17RN3	349 aa	Known RBP	13.39	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	SWT1	Q5T5J6	900 aa	Known RBP	13.38	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	RSPH6A	Q9H0K4	717 aa		13.38	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	LAPTM4B	Q86VI4	370 aa		13.37	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	NBPF3	Q9H094	633 aa		13.37	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	TBC1D2	Q9BYX2	928 aa		13.35	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	SKIV2L	Q15477	1246 aa	Known RBP	13.34	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	MYSM1	Q5VVJ2	828 aa		13.34	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.34	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	TIMELESS	Q9UNS1	1208 aa		13.34	□□□□□ -0.27
SOX2-OT-231	ENST00000599082	HR	O43593	1189 aa		13.33	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	RDH13	Q8NBN7	331 aa		13.33	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	HDGF	P51858	240 aa	Known RBP	13.32	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	SAMD7	Q7Z3H4	446 aa		13.32	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	SPIRE2	Q8WWL2	714 aa		13.32	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	SLC10A3	P09131	477 aa		13.31	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	DIXDC1	Q155Q3	683 aa		13.31	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	MRPL50	Q8N5N7	158 aa	Known RBP	13.31	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	POLR3E	Q9NVU0	708 aa		13.31	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	ZFR	Q96KR1	1074 aa	Known RBP	13.3	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	NUTM1	Q86Y26	1132 aa		13.29	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	RSPH4A	Q5TD94	716 aa		13.28	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.28	□□□□□ -0.28
SOX2-OT-231	ENST00000599082	GCGR	P47871	477 aa		13.27	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	SLF2	Q8IX21	1173 aa		13.27	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	CLK2	P49760	499 aa	Known RBP	13.26	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	SLC4A3	P48751	1232 aa		13.25	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	ERICH6	Q7L0X2	663 aa		13.25	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	KDM4A	O75164	1064 aa		13.24	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	LIMD1	Q9UGP4	676 aa		13.24	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	RIC3	Q7Z5B4	369 aa		13.23	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	C14orf37	Q86TY3	774 aa		13.23	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	MOXD2P	A6NHM9	499 aa		13.22	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	KCTD12	Q96CX2	325 aa	Known RBP	13.22	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	SPTLC1	O15269	473 aa		13.21	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	RNF40	O75150	1001 aa		13.21	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.21	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	LRCH3	Q96II8	777 aa		13.21	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	STAC3	Q96MF2	364 aa		13.21	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.21	□□□□□ -0.29
SOX2-OT-231	ENST00000599082	NDUFV2	P19404	249 aa		13.2	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	USP46	P62068	366 aa		13.2	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.2	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	CFH	P08603	1231 aa		13.19	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	TUSC1	Q2TAM9	212 aa		13.19	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	GOLGA8CP	A6NN73	597 aa		13.18	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	HOXA2	O43364	376 aa		13.18	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	GJA5	P36382	358 aa		13.18	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.17	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	ANKK1	Q8NFD2	765 aa		13.17	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	SOWAHB	A6NEL2	793 aa		13.15	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	PCDHB15	Q9Y5E8	787 aa		13.15	□□□□□ -0.3
SOX2-OT-231	ENST00000599082	FUT2	Q10981	343 aa		13.14	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	BCAM	P50895	628 aa		13.13	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	CSPP1	Q1MSJ5	1256 aa		13.13	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	PPP2R2D	Q66LE6	453 aa		13.13	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	NECTIN2	Q92692	538 aa		13.13	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	WNT2B	Q93097	391 aa		13.13	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	HLA-C	Q95604	372 aa		13.13	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	KMT5B	Q4FZB7	885 aa		13.12	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	FDX1	P10109	184 aa		13.11	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	GUCA2A	Q02747	115 aa		13.11	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	QPCT	Q16769	361 aa		13.11	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	PCDHGC3	Q9UN70	934 aa		13.11	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	HPS5	Q9UPZ3	1129 aa		13.11	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	LILRB3	O75022	631 aa		13.1	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	RFC5	P40937	340 aa		13.1	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	FLII	Q13045	1269 aa		13.1	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	ATP6V1A	P38606	617 aa		13.09	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	PPP4C	P60510	307 aa		13.09	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	GRIPAP1	Q4V328	841 aa		13.09	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	TSR3	Q9UJK0	312 aa	Known RBP	13.09	□□□□□ -0.31
SOX2-OT-231	ENST00000599082	ACTN4	O43707	911 aa	Known RBP	13.08	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	PRPF38B	Q5VTL8	546 aa	Known RBP	13.08	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	CABLES1	Q8TDN4	633 aa		13.07	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	RGS20	O76081	388 aa		13.06	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	HRC	P23327	699 aa		13.06	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	PTPN5	P54829	565 aa		13.06	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	RTL5	Q5HYW3	569 aa	Predicted RBP	13.06	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	APLP1	P51693	650 aa		13.05	□□□□□ -0.32
SOX2-OT-231	ENST00000599082	IFFO2	Q5TF58	517 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms