RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MYO5BQ9ULV0 1848 aa22.86■■□□□ 1.25
TRIM28-205ENST00000595028 STAG3Q9UJ98 1225 aa22.84■■□□□ 1.25
TRIM28-205ENST00000595028 SPHKAPQ2M3C7 1700 aa22.84■■□□□ 1.25
TRIM28-205ENST00000595028 TMEM131LA2VDJ0 1609 aa22.83■■□□□ 1.25
TRIM28-205ENST00000595028 LTKP29376 864 aa22.8■■□□□ 1.24
TRIM28-205ENST00000595028 TXNDC2Q86VQ3 553 aa22.79■■□□□ 1.24
TRIM28-205ENST00000595028 POTEAQ6S8J7 498 aa22.78■■□□□ 1.24
TRIM28-205ENST00000595028 EID1Q9Y6B2 187 aa22.78■■□□□ 1.24
TRIM28-205ENST00000595028 ZFYVE9O95405 1425 aa22.75■■□□□ 1.23
TRIM28-205ENST00000595028 TRPM2O94759 1503 aa22.74■■□□□ 1.23
TRIM28-205ENST00000595028 XIRP1Q702N8 1843 aaKnown RBP22.73■■□□□ 1.23
TRIM28-205ENST00000595028 RIMS2Q9UQ26 1411 aa22.72■■□□□ 1.23
TRIM28-205ENST00000595028 CLTCL1P53675 1640 aa22.71■■□□□ 1.23
TRIM28-205ENST00000595028 SETD1AO15047 1707 aaKnown RBP22.68■■□□□ 1.22
TRIM28-205ENST00000595028 TRIM52Q96A61 297 aa22.68■■□□□ 1.22
TRIM28-205ENST00000595028 CHGAP10645 457 aaKnown RBP22.67■■□□□ 1.22
TRIM28-205ENST00000595028 FAM135BQ49AJ0 1406 aa22.66■■□□□ 1.22
TRIM28-205ENST00000595028 PLEKHG1Q9ULL1 1385 aa22.66■■□□□ 1.22
TRIM28-205ENST00000595028 KIF1BO60333 1816 aa22.64■■□□□ 1.22
TRIM28-205ENST00000595028 NWD1Q149M9 1564 aa22.64■■□□□ 1.22
TRIM28-205ENST00000595028 PPP1R15AO75807 674 aaPredicted RBP22.62■■□□□ 1.21
TRIM28-205ENST00000595028 SLC4A1APQ9BWU0 796 aaKnown RBP22.62■■□□□ 1.21
TRIM28-205ENST00000595028 HDGFP51858 240 aaKnown RBP22.61■■□□□ 1.21
TRIM28-205ENST00000595028 DIP2AQ14689 1571 aa22.61■■□□□ 1.21
TRIM28-205ENST00000595028 SETD5Q9C0A6 1442 aa22.6■■□□□ 1.21
TRIM28-205ENST00000595028 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.6■■□□□ 1.21
TRIM28-205ENST00000595028 SLC26A8Q96RN1 970 aa22.6■■□□□ 1.21
TRIM28-205ENST00000595028 ROBO1Q9Y6N7 1651 aa22.59■■□□□ 1.21
TRIM28-205ENST00000595028 NKTRP30414 1462 aaKnown RBP22.58■■□□□ 1.2
TRIM28-205ENST00000595028 NEXMIFQ5QGS0 1516 aa22.57■■□□□ 1.2
TRIM28-205ENST00000595028 CHD2O14647 1828 aaKnown RBP22.57■■□□□ 1.2
TRIM28-205ENST00000595028 ADAMTS13Q76LX8 1427 aa22.57■■□□□ 1.2
TRIM28-205ENST00000595028 BCANQ96GW7 911 aa22.56■■□□□ 1.2
TRIM28-205ENST00000595028 NRXN3Q9Y4C0 1643 aa22.56■■□□□ 1.2
TRIM28-205ENST00000595028 NUTM2DQ5VT03 806 aaPredicted RBP22.55■■□□□ 1.2
TRIM28-205ENST00000595028 SETBP1Q9Y6X0 1596 aa22.55■■□□□ 1.2
TRIM28-205ENST00000595028 TMEM94Q12767 1356 aa22.54■■□□□ 1.2
TRIM28-205ENST00000595028 KCNA6P17658 529 aa22.54■■□□□ 1.2
TRIM28-205ENST00000595028 ACIN1Q9UKV3 1341 aaKnown RBP22.54■■□□□ 1.2
TRIM28-205ENST00000595028 RAB3GAP2Q9H2M9 1393 aa22.52■■□□□ 1.2
TRIM28-205ENST00000595028 ZNF326Q5BKZ1 582 aaKnown RBP22.51■■□□□ 1.19
TRIM28-205ENST00000595028 FOXD1Q16676 465 aa22.5■■□□□ 1.19
TRIM28-205ENST00000595028 MPHOSPH9Q99550 1183 aa22.5■■□□□ 1.19
TRIM28-205ENST00000595028 TBX22Q9Y458 520 aa22.5■■□□□ 1.19
TRIM28-205ENST00000595028 CCDC144AA2RUR9 1427 aa22.48■■□□□ 1.19
TRIM28-205ENST00000595028 PPLO60437 1756 aa22.48■■□□□ 1.19
TRIM28-205ENST00000595028 UPF1Q92900 1129 aaKnown RBP eCLIP22.48■■□□□ 1.19
TRIM28-205ENST00000595028 PIK3R4Q99570 1358 aa22.48■■□□□ 1.19
TRIM28-205ENST00000595028 RBM33Q96EV2 1170 aaKnown RBP22.47■■□□□ 1.19
TRIM28-205ENST00000595028 PHLPP1O60346 1717 aa22.47■■□□□ 1.19
TRIM28-205ENST00000595028 XRN1Q8IZH2 1706 aaKnown RBP22.45■■□□□ 1.19
TRIM28-205ENST00000595028 PROSER2Q86WR7 435 aaPredicted RBP22.45■■□□□ 1.18
TRIM28-205ENST00000595028 JCADQ9P266 1359 aa22.45■■□□□ 1.18
TRIM28-205ENST00000595028 SRCAPQ6ZRS2 3230 aa22.45■■□□□ 1.18
TRIM28-205ENST00000595028 IFT172Q9UG01 1749 aa22.43■■□□□ 1.18
TRIM28-205ENST00000595028 SPATA31E1Q6ZUB1 1445 aa22.42■■□□□ 1.18
TRIM28-205ENST00000595028 PTPRUQ92729 1446 aa22.41■■□□□ 1.18
TRIM28-205ENST00000595028 RPGRIP1LQ68CZ1 1315 aa22.4■■□□□ 1.18
TRIM28-205ENST00000595028 SLAIN2Q9P270 581 aa22.38■■□□□ 1.17
TRIM28-205ENST00000595028 LRP6O75581 1613 aa22.38■■□□□ 1.17
TRIM28-205ENST00000595028 MSH6P52701 1360 aa22.38■■□□□ 1.17
TRIM28-205ENST00000595028 COL16A1Q07092 1604 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-205ENST00000595028 NCOA3Q9Y6Q9 1424 aa22.37■■□□□ 1.17
TRIM28-205ENST00000595028 METP08581 1390 aa22.37■■□□□ 1.17
TRIM28-205ENST00000595028 VGFO15240 615 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-205ENST00000595028 ZNF772Q68DY9 489 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-205ENST00000595028 HRCP23327 699 aa22.34■■□□□ 1.17
TRIM28-205ENST00000595028 AMOTL2Q9Y2J4 779 aa22.34■■□□□ 1.17
TRIM28-205ENST00000595028 MEX3CQ5U5Q3 659 aaKnown RBP22.33■■□□□ 1.17
TRIM28-205ENST00000595028 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-205ENST00000595028 SPATA31A6Q5VVP1 1343 aa22.31■■□□□ 1.16
TRIM28-205ENST00000595028 ANKRD30BQ9BXX2 1392 aa22.3■■□□□ 1.16
TRIM28-205ENST00000595028 PRAG1Q86YV5 1406 aa22.29■■□□□ 1.16
TRIM28-205ENST00000595028 RGL3Q3MIN7 710 aa22.28■■□□□ 1.16
TRIM28-205ENST00000595028 PTCH1Q13635 1447 aa22.28■■□□□ 1.16
TRIM28-205ENST00000595028 RXRBP28702 533 aa22.27■■□□□ 1.16
TRIM28-205ENST00000595028 C14orf37Q86TY3 774 aa22.27■■□□□ 1.16
TRIM28-205ENST00000595028 ADGRF5Q8IZF2 1346 aa22.27■■□□□ 1.16
TRIM28-205ENST00000595028 NALCNQ8IZF0 1738 aa22.26■■□□□ 1.15
TRIM28-205ENST00000595028 PIK3C2GO75747 1445 aa22.26■■□□□ 1.15
TRIM28-205ENST00000595028 MYOM2P54296 1465 aa22.26■■□□□ 1.15
TRIM28-205ENST00000595028 SHPRHQ149N8 1683 aa22.26■■□□□ 1.15
TRIM28-205ENST00000595028 DCCP43146 1447 aa22.25■■□□□ 1.15
TRIM28-205ENST00000595028 ASXL1Q8IXJ9 1541 aa22.24■■□□□ 1.15
TRIM28-205ENST00000595028 ADGRL3Q9HAR2 1447 aa22.23■■□□□ 1.15
TRIM28-205ENST00000595028 CDK12Q9NYV4 1490 aaPredicted RBP22.23■■□□□ 1.15
TRIM28-205ENST00000595028 NRXN1Q9ULB1 1477 aa22.23■■□□□ 1.15
TRIM28-205ENST00000595028 C19orf44Q9H6X5 657 aa22.23■■□□□ 1.15
TRIM28-205ENST00000595028 LAMC1P11047 1609 aa22.22■■□□□ 1.15
TRIM28-205ENST00000595028 AHDC1Q5TGY3 1603 aaPredicted RBP22.22■■□□□ 1.15
TRIM28-205ENST00000595028 KNDC1Q76NI1 1749 aa22.21■■□□□ 1.15
TRIM28-205ENST00000595028 CADPS2Q86UW7 1296 aa22.2■■□□□ 1.14
TRIM28-205ENST00000595028 ROBO2Q9HCK4 1378 aa22.2■■□□□ 1.14
TRIM28-205ENST00000595028 ATF3P18847 181 aa22.19■■□□□ 1.14
TRIM28-205ENST00000595028 TECPR2O15040 1411 aa22.17■■□□□ 1.14
TRIM28-205ENST00000595028 MST1RQ04912 1400 aa22.15■■□□□ 1.14
TRIM28-205ENST00000595028 NUTM2BA6NNL0 878 aaPredicted RBP22.15■■□□□ 1.14
TRIM28-205ENST00000595028 NUTM2EB1AL46 878 aaPredicted RBP22.15■■□□□ 1.14
TRIM28-205ENST00000595028 NUTM2AQ8IVF1 878 aaPredicted RBP22.15■■□□□ 1.14
TRIM28-205ENST00000595028 AFF2P51816 1311 aa22.14■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms