RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 TMEM94Q12767 1356 aa22.8■■□□□ 1.24
PNKP-202ENST00000593706 TMEM131LA2VDJ0 1609 aa22.8■■□□□ 1.24
PNKP-202ENST00000593706 SLC26A8Q96RN1 970 aa22.8■■□□□ 1.24
PNKP-202ENST00000593706 BCANQ96GW7 911 aa22.78■■□□□ 1.24
PNKP-202ENST00000593706 SLC52A1Q9NWF4 448 aa22.78■■□□□ 1.24
PNKP-202ENST00000593706 IQGAP3Q86VI3 1631 aa22.78■■□□□ 1.24
PNKP-202ENST00000593706 KCNA6P17658 529 aa22.76■■□□□ 1.23
PNKP-202ENST00000593706 PHLPP1O60346 1717 aa22.74■■□□□ 1.23
PNKP-202ENST00000593706 PROSER2Q86WR7 435 aaPredicted RBP22.74■■□□□ 1.23
PNKP-202ENST00000593706 ZFYVE9O95405 1425 aa22.74■■□□□ 1.23
PNKP-202ENST00000593706 FAM135BQ49AJ0 1406 aa22.74■■□□□ 1.23
PNKP-202ENST00000593706 PPP1R15AO75807 674 aaPredicted RBP22.72■■□□□ 1.23
PNKP-202ENST00000593706 RIMS2Q9UQ26 1411 aa22.72■■□□□ 1.23
PNKP-202ENST00000593706 RBM33Q96EV2 1170 aaKnown RBP22.71■■□□□ 1.23
PNKP-202ENST00000593706 PLEKHG1Q9ULL1 1385 aa22.71■■□□□ 1.23
PNKP-202ENST00000593706 MSH6P52701 1360 aa22.7■■□□□ 1.22
PNKP-202ENST00000593706 SPHKAPQ2M3C7 1700 aa22.68■■□□□ 1.22
PNKP-202ENST00000593706 DIP2AQ14689 1571 aa22.68■■□□□ 1.22
PNKP-202ENST00000593706 ROCK1Q13464 1354 aa22.66■■□□□ 1.22
PNKP-202ENST00000593706 CHGAP10645 457 aaKnown RBP22.66■■□□□ 1.22
PNKP-202ENST00000593706 HDGFP51858 240 aaKnown RBP22.66■■□□□ 1.22
PNKP-202ENST00000593706 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.63■■□□□ 1.21
PNKP-202ENST00000593706 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.61■■□□□ 1.21
PNKP-202ENST00000593706 TRPM2O94759 1503 aa22.61■■□□□ 1.21
PNKP-202ENST00000593706 COL16A1Q07092 1604 aaPredicted RBP22.6■■□□□ 1.21
PNKP-202ENST00000593706 ITGAEP38570 1179 aa22.59■■□□□ 1.21
PNKP-202ENST00000593706 RGS17Q9UGC6 210 aaPredicted RBP22.58■■□□□ 1.21
PNKP-202ENST00000593706 NUP155O75694 1391 aa22.58■■□□□ 1.21
PNKP-202ENST00000593706 ADAMTS13Q76LX8 1427 aa22.57■■□□□ 1.2
PNKP-202ENST00000593706 NUTM2DQ5VT03 806 aaPredicted RBP22.57■■□□□ 1.2
PNKP-202ENST00000593706 C14orf37Q86TY3 774 aa22.57■■□□□ 1.2
PNKP-202ENST00000593706 SLAIN2Q9P270 581 aa22.57■■□□□ 1.2
PNKP-202ENST00000593706 TBX22Q9Y458 520 aa22.56■■□□□ 1.2
PNKP-202ENST00000593706 KIF1BO60333 1816 aa22.56■■□□□ 1.2
PNKP-202ENST00000593706 SETD1AO15047 1707 aaKnown RBP22.56■■□□□ 1.2
PNKP-202ENST00000593706 NRXN3Q9Y4C0 1643 aa22.55■■□□□ 1.2
PNKP-202ENST00000593706 NCOA3Q9Y6Q9 1424 aa22.54■■□□□ 1.2
PNKP-202ENST00000593706 PIK3R4Q99570 1358 aa22.53■■□□□ 1.2
PNKP-202ENST00000593706 SHPRHQ149N8 1683 aa22.53■■□□□ 1.2
PNKP-202ENST00000593706 XRN1Q8IZH2 1706 aaKnown RBP22.53■■□□□ 1.2
PNKP-202ENST00000593706 JCADQ9P266 1359 aa22.52■■□□□ 1.2
PNKP-202ENST00000593706 AHDC1Q5TGY3 1603 aaPredicted RBP22.51■■□□□ 1.19
PNKP-202ENST00000593706 SETBP1Q9Y6X0 1596 aa22.5■■□□□ 1.19
PNKP-202ENST00000593706 CLTCL1P53675 1640 aa22.49■■□□□ 1.19
PNKP-202ENST00000593706 PPARGC1BQ86YN6 1023 aaKnown RBP22.49■■□□□ 1.19
PNKP-202ENST00000593706 ATF3P18847 181 aa22.47■■□□□ 1.19
PNKP-202ENST00000593706 POTEAQ6S8J7 498 aa22.47■■□□□ 1.19
PNKP-202ENST00000593706 CADPS2Q86UW7 1296 aa22.46■■□□□ 1.19
PNKP-202ENST00000593706 C19orf44Q9H6X5 657 aa22.45■■□□□ 1.18
PNKP-202ENST00000593706 PTPRUQ92729 1446 aa22.45■■□□□ 1.18
PNKP-202ENST00000593706 NALCNQ8IZF0 1738 aa22.45■■□□□ 1.18
PNKP-202ENST00000593706 NHSL1Q5SYE7 1610 aa22.44■■□□□ 1.18
PNKP-202ENST00000593706 ZNF326Q5BKZ1 582 aaKnown RBP22.43■■□□□ 1.18
PNKP-202ENST00000593706 AMOTL2Q9Y2J4 779 aa22.43■■□□□ 1.18
PNKP-202ENST00000593706 LRP6O75581 1613 aa22.42■■□□□ 1.18
PNKP-202ENST00000593706 NEXMIFQ5QGS0 1516 aa22.42■■□□□ 1.18
PNKP-202ENST00000593706 DCCP43146 1447 aa22.42■■□□□ 1.18
PNKP-202ENST00000593706 SPATA31A6Q5VVP1 1343 aa22.4■■□□□ 1.18
PNKP-202ENST00000593706 ASXL1Q8IXJ9 1541 aa22.4■■□□□ 1.18
PNKP-202ENST00000593706 MEX3CQ5U5Q3 659 aaKnown RBP22.39■■□□□ 1.17
PNKP-202ENST00000593706 RRBP1Q9P2E9 1410 aaKnown RBP22.36■■□□□ 1.17
PNKP-202ENST00000593706 PPLO60437 1756 aa22.35■■□□□ 1.17
PNKP-202ENST00000593706 MST1RQ04912 1400 aa22.34■■□□□ 1.17
PNKP-202ENST00000593706 NAIPQ13075 1403 aa22.34■■□□□ 1.17
PNKP-202ENST00000593706 BRINP3Q76B58 766 aa22.34■■□□□ 1.17
PNKP-202ENST00000593706 METP08581 1390 aa22.34■■□□□ 1.17
PNKP-202ENST00000593706 ADGRL3Q9HAR2 1447 aa22.32■■□□□ 1.16
PNKP-202ENST00000593706 ZNF772Q68DY9 489 aaPredicted RBP22.3■■□□□ 1.16
PNKP-202ENST00000593706 NUTM2BA6NNL0 878 aaPredicted RBP22.27■■□□□ 1.16
PNKP-202ENST00000593706 NUTM2EB1AL46 878 aaPredicted RBP22.27■■□□□ 1.16
PNKP-202ENST00000593706 NUTM2AQ8IVF1 878 aaPredicted RBP22.27■■□□□ 1.16
PNKP-202ENST00000593706 SETD5Q9C0A6 1442 aa22.27■■□□□ 1.16
PNKP-202ENST00000593706 HFM1A2PYH4 1435 aa22.25■■□□□ 1.15
PNKP-202ENST00000593706 LAMC1P11047 1609 aa22.24■■□□□ 1.15
PNKP-202ENST00000593706 PTCH1Q13635 1447 aa22.24■■□□□ 1.15
PNKP-202ENST00000593706 TRIM52Q96A61 297 aa22.24■■□□□ 1.15
PNKP-202ENST00000593706 IFT172Q9UG01 1749 aa22.21■■□□□ 1.15
PNKP-202ENST00000593706 VGFO15240 615 aaPredicted RBP22.19■■□□□ 1.14
PNKP-202ENST00000593706 LRRC59Q96AG4 307 aaKnown RBP22.19■■□□□ 1.14
PNKP-202ENST00000593706 C1orf167Q5SNV9 1468 aa22.19■■□□□ 1.14
PNKP-202ENST00000593706 AFF2P51816 1311 aa22.18■■□□□ 1.14
PNKP-202ENST00000593706 DDX17Q92841 729 aaKnown RBP22.18■■□□□ 1.14
PNKP-202ENST00000593706 SLC4A1APQ9BWU0 796 aaKnown RBP22.18■■□□□ 1.14
PNKP-202ENST00000593706 CDK12Q9NYV4 1490 aaPredicted RBP22.17■■□□□ 1.14
PNKP-202ENST00000593706 PNPLA6Q8IY17 1366 aa22.17■■□□□ 1.14
PNKP-202ENST00000593706 RXRBP28702 533 aa22.17■■□□□ 1.14
PNKP-202ENST00000593706 ROBO2Q9HCK4 1378 aa22.16■■□□□ 1.14
PNKP-202ENST00000593706 PRAG1Q86YV5 1406 aa22.15■■□□□ 1.14
PNKP-202ENST00000593706 RPGRIP1LQ68CZ1 1315 aa22.15■■□□□ 1.14
PNKP-202ENST00000593706 MARF1Q9Y4F3 1742 aaKnown RBP22.14■■□□□ 1.14
PNKP-202ENST00000593706 CDC42BPGQ6DT37 1551 aa22.14■■□□□ 1.13
PNKP-202ENST00000593706 C8orf37Q96NL8 207 aa22.13■■□□□ 1.13
PNKP-202ENST00000593706 KNDC1Q76NI1 1749 aa22.13■■□□□ 1.13
PNKP-202ENST00000593706 COL22A1Q8NFW1 1626 aaPredicted RBP22.12■■□□□ 1.13
PNKP-202ENST00000593706 CCDC144AA2RUR9 1427 aa22.1■■□□□ 1.13
PNKP-202ENST00000593706 UPF1Q92900 1129 aaKnown RBP eCLIP22.1■■□□□ 1.13
PNKP-202ENST00000593706 RGS12O14924 1447 aa22.08■■□□□ 1.13
PNKP-202ENST00000593706 ADAMTS2O95450 1211 aa22.07■■□□□ 1.12
PNKP-202ENST00000593706 FOXD1Q16676 465 aa22.07■■□□□ 1.12
PNKP-202ENST00000593706 ORAI2Q96SN7 254 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms