RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 NKTRP30414 1462 aaKnown RBP36.74■■■■□ 3.47
LSM4-202ENST00000593564 PLEKHG1Q9ULL1 1385 aa36.73■■■■□ 3.47
LSM4-202ENST00000593564 RIMS2Q9UQ26 1411 aa36.73■■■■□ 3.47
LSM4-202ENST00000593564 TMEM131LA2VDJ0 1609 aa36.73■■■■□ 3.47
LSM4-202ENST00000593564 FAM135BQ49AJ0 1406 aa36.72■■■■□ 3.47
LSM4-202ENST00000593564 PROSER2Q86WR7 435 aaPredicted RBP36.72■■■■□ 3.47
LSM4-202ENST00000593564 BCANQ96GW7 911 aa36.72■■■■□ 3.47
LSM4-202ENST00000593564 HDGFP51858 240 aaKnown RBP36.71■■■■□ 3.47
LSM4-202ENST00000593564 IQGAP3Q86VI3 1631 aa36.7■■■■□ 3.47
LSM4-202ENST00000593564 E9PCH4 1651 aa36.7■■■■□ 3.47
LSM4-202ENST00000593564 MYO5BQ9ULV0 1848 aa36.69■■■■□ 3.46
LSM4-202ENST00000593564 PHF23Q9BUL5 403 aaPredicted RBP36.68■■■■□ 3.46
LSM4-202ENST00000593564 PPP1R15AO75807 674 aaPredicted RBP36.67■■■■□ 3.46
LSM4-202ENST00000593564 NUP155O75694 1391 aa36.65■■■■□ 3.46
LSM4-202ENST00000593564 ITGAEP38570 1179 aa36.64■■■■□ 3.46
LSM4-202ENST00000593564 RBM33Q96EV2 1170 aaKnown RBP36.64■■■■□ 3.46
LSM4-202ENST00000593564 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.63■■■■□ 3.45
LSM4-202ENST00000593564 CHGAP10645 457 aaKnown RBP36.62■■■■□ 3.45
LSM4-202ENST00000593564 PPARGC1BQ86YN6 1023 aaKnown RBP36.59■■■■□ 3.45
LSM4-202ENST00000593564 TBX22Q9Y458 520 aa36.59■■■■□ 3.45
LSM4-202ENST00000593564 MSH6P52701 1360 aa36.58■■■■□ 3.45
LSM4-202ENST00000593564 CHD2O14647 1828 aaKnown RBP36.56■■■■□ 3.44
LSM4-202ENST00000593564 ROBO1Q9Y6N7 1651 aa36.54■■■■□ 3.44
LSM4-202ENST00000593564 ADAMTS13Q76LX8 1427 aa36.53■■■■□ 3.44
LSM4-202ENST00000593564 DIP2AQ14689 1571 aa36.5■■■■□ 3.43
LSM4-202ENST00000593564 NUTM2DQ5VT03 806 aaPredicted RBP36.5■■■■□ 3.43
LSM4-202ENST00000593564 NCOA3Q9Y6Q9 1424 aa36.49■■■■□ 3.43
LSM4-202ENST00000593564 PIK3R4Q99570 1358 aa36.48■■■■□ 3.43
LSM4-202ENST00000593564 SLAIN2Q9P270 581 aa36.47■■■■□ 3.43
LSM4-202ENST00000593564 RRBP1Q9P2E9 1410 aaKnown RBP36.42■■■■□ 3.42
LSM4-202ENST00000593564 RGS17Q9UGC6 210 aaPredicted RBP36.41■■■■□ 3.42
LSM4-202ENST00000593564 SPHKAPQ2M3C7 1700 aa36.39■■■■□ 3.42
LSM4-202ENST00000593564 TRPM2O94759 1503 aa36.38■■■■□ 3.41
LSM4-202ENST00000593564 C14orf37Q86TY3 774 aa36.35■■■■□ 3.41
LSM4-202ENST00000593564 C19orf44Q9H6X5 657 aa36.32■■■■□ 3.4
LSM4-202ENST00000593564 AMOTL2Q9Y2J4 779 aa36.32■■■■□ 3.4
LSM4-202ENST00000593564 NAIPQ13075 1403 aa36.32■■■■□ 3.4
LSM4-202ENST00000593564 PTPRUQ92729 1446 aa36.32■■■■□ 3.4
LSM4-202ENST00000593564 CADPS2Q86UW7 1296 aa36.31■■■■□ 3.4
LSM4-202ENST00000593564 SETBP1Q9Y6X0 1596 aa36.31■■■■□ 3.4
LSM4-202ENST00000593564 PHLPP1O60346 1717 aa36.31■■■■□ 3.4
LSM4-202ENST00000593564 JCADQ9P266 1359 aa36.28■■■■□ 3.4
LSM4-202ENST00000593564 NRXN3Q9Y4C0 1643 aa36.28■■■■□ 3.4
LSM4-202ENST00000593564 ZNF326Q5BKZ1 582 aaKnown RBP36.28■■■■□ 3.4
LSM4-202ENST00000593564 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.27■■■■□ 3.4
LSM4-202ENST00000593564 ATF3P18847 181 aa36.26■■■■□ 3.4
LSM4-202ENST00000593564 CLTCL1P53675 1640 aa36.23■■■■□ 3.39
LSM4-202ENST00000593564 COL16A1Q07092 1604 aaPredicted RBP36.23■■■■□ 3.39
LSM4-202ENST00000593564 XRN1Q8IZH2 1706 aaKnown RBP36.22■■■■□ 3.39
LSM4-202ENST00000593564 DCCP43146 1447 aa36.19■■■■□ 3.38
LSM4-202ENST00000593564 POTEAQ6S8J7 498 aa36.19■■■■□ 3.38
LSM4-202ENST00000593564 NEXMIFQ5QGS0 1516 aa36.18■■■■□ 3.38
LSM4-202ENST00000593564 METP08581 1390 aa36.18■■■■□ 3.38
LSM4-202ENST00000593564 AHDC1Q5TGY3 1603 aaPredicted RBP36.18■■■■□ 3.38
LSM4-202ENST00000593564 HFM1A2PYH4 1435 aa36.17■■■■□ 3.38
LSM4-202ENST00000593564 BRINP3Q76B58 766 aa36.11■■■■□ 3.37
LSM4-202ENST00000593564 SPATA31A6Q5VVP1 1343 aa36.1■■■■□ 3.37
LSM4-202ENST00000593564 TRIM52Q96A61 297 aa36.1■■■■□ 3.37
LSM4-202ENST00000593564 KIF1BO60333 1816 aa36.1■■■■□ 3.37
LSM4-202ENST00000593564 MST1RQ04912 1400 aa36.05■■■■□ 3.36
LSM4-202ENST00000593564 LRP6O75581 1613 aa36.05■■■■□ 3.36
LSM4-202ENST00000593564 SLC4A1APQ9BWU0 796 aaKnown RBP36.04■■■■□ 3.36
LSM4-202ENST00000593564 ADGRL3Q9HAR2 1447 aa36.03■■■■□ 3.36
LSM4-202ENST00000593564 SHPRHQ149N8 1683 aa36.03■■■■□ 3.36
LSM4-202ENST00000593564 ASXL1Q8IXJ9 1541 aa36.03■■■■□ 3.36
LSM4-202ENST00000593564 VGFO15240 615 aaPredicted RBP36.02■■■■□ 3.36
LSM4-202ENST00000593564 RPGRIP1LQ68CZ1 1315 aa36■■■■□ 3.35
LSM4-202ENST00000593564 MEX3CQ5U5Q3 659 aaKnown RBP35.96■■■■□ 3.35
LSM4-202ENST00000593564 PTCH1Q13635 1447 aa35.95■■■■□ 3.35
LSM4-202ENST00000593564 SETD5Q9C0A6 1442 aa35.94■■■■□ 3.34
LSM4-202ENST00000593564 SETD1AO15047 1707 aaKnown RBP35.93■■■■□ 3.34
LSM4-202ENST00000593564 NALCNQ8IZF0 1738 aa35.93■■■■□ 3.34
LSM4-202ENST00000593564 NHSL1Q5SYE7 1610 aa35.92■■■■□ 3.34
LSM4-202ENST00000593564 PRAG1Q86YV5 1406 aa35.91■■■■□ 3.34
LSM4-202ENST00000593564 ZNF772Q68DY9 489 aaPredicted RBP35.9■■■■□ 3.34
LSM4-202ENST00000593564 ROBO2Q9HCK4 1378 aa35.89■■■■□ 3.34
LSM4-202ENST00000593564 PPLO60437 1756 aa35.87■■■■□ 3.33
LSM4-202ENST00000593564 LRRC59Q96AG4 307 aaKnown RBP35.86■■■■□ 3.33
LSM4-202ENST00000593564 C1orf167Q5SNV9 1468 aa35.85■■■■□ 3.33
LSM4-202ENST00000593564 FOXD1Q16676 465 aa35.84■■■■□ 3.33
LSM4-202ENST00000593564 NUTM2BA6NNL0 878 aaPredicted RBP35.83■■■■□ 3.33
LSM4-202ENST00000593564 NUTM2EB1AL46 878 aaPredicted RBP35.83■■■■□ 3.33
LSM4-202ENST00000593564 NUTM2AQ8IVF1 878 aaPredicted RBP35.83■■■■□ 3.33
LSM4-202ENST00000593564 DDX17Q92841 729 aaKnown RBP35.81■■■■□ 3.32
LSM4-202ENST00000593564 CCDC144AA2RUR9 1427 aa35.81■■■■□ 3.32
LSM4-202ENST00000593564 PNPLA6Q8IY17 1366 aa35.77■■■■□ 3.32
LSM4-202ENST00000593564 MPHOSPH9Q99550 1183 aa35.76■■■■□ 3.32
LSM4-202ENST00000593564 SPATA31E1Q6ZUB1 1445 aa35.74■■■■□ 3.31
LSM4-202ENST00000593564 LAMC1P11047 1609 aa35.74■■■■□ 3.31
LSM4-202ENST00000593564 ADGRF5Q8IZF2 1346 aa35.73■■■■□ 3.31
LSM4-202ENST00000593564 AFF2P51816 1311 aa35.71■■■■□ 3.31
LSM4-202ENST00000593564 RXRBP28702 533 aa35.7■■■■□ 3.31
LSM4-202ENST00000593564 ORAI2Q96SN7 254 aa35.7■■■■□ 3.31
LSM4-202ENST00000593564 ANKRD30BQ9BXX2 1392 aa35.7■■■■□ 3.31
LSM4-202ENST00000593564 RGL3Q3MIN7 710 aa35.69■■■■□ 3.3
LSM4-202ENST00000593564 SOS2Q07890 1332 aaPredicted RBP35.68■■■■□ 3.3
LSM4-202ENST00000593564 CDK12Q9NYV4 1490 aaPredicted RBP35.65■■■■□ 3.3
LSM4-202ENST00000593564 TECPR2O15040 1411 aa35.65■■■■□ 3.3
LSM4-202ENST00000593564 CDC42BPGQ6DT37 1551 aa35.64■■■■□ 3.3
LSM4-202ENST00000593564 ACIN1Q9UKV3 1341 aaKnown RBP35.64■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms