RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 TMEM131LA2VDJ0 1609 aa25.34■■□□□ 1.65
LIG1-205ENST00000593425 ZFYVE9O95405 1425 aa25.34■■□□□ 1.65
LIG1-205ENST00000593425 NKTRP30414 1462 aaKnown RBP25.33■■□□□ 1.65
LIG1-205ENST00000593425 E9PCH4 1651 aa25.32■■□□□ 1.64
LIG1-205ENST00000593425 FAM135BQ49AJ0 1406 aa25.31■■□□□ 1.64
LIG1-205ENST00000593425 RBM33Q96EV2 1170 aaKnown RBP25.31■■□□□ 1.64
LIG1-205ENST00000593425 ROBO1Q9Y6N7 1651 aa25.31■■□□□ 1.64
LIG1-205ENST00000593425 PROSER2Q86WR7 435 aaPredicted RBP25.29■■□□□ 1.64
LIG1-205ENST00000593425 RIMS2Q9UQ26 1411 aa25.29■■□□□ 1.64
LIG1-205ENST00000593425 CHD2O14647 1828 aaKnown RBP25.28■■□□□ 1.64
LIG1-205ENST00000593425 IQGAP3Q86VI3 1631 aa25.28■■□□□ 1.64
LIG1-205ENST00000593425 PLEKHG1Q9ULL1 1385 aa25.27■■□□□ 1.64
LIG1-205ENST00000593425 BCANQ96GW7 911 aa25.26■■□□□ 1.63
LIG1-205ENST00000593425 ROCK1Q13464 1354 aa25.25■■□□□ 1.63
LIG1-205ENST00000593425 PPP1R15AO75807 674 aaPredicted RBP25.21■■□□□ 1.63
LIG1-205ENST00000593425 RGS17Q9UGC6 210 aaPredicted RBP25.2■■□□□ 1.62
LIG1-205ENST00000593425 MSH6P52701 1360 aa25.19■■□□□ 1.62
LIG1-205ENST00000593425 CHGAP10645 457 aaKnown RBP25.19■■□□□ 1.62
LIG1-205ENST00000593425 ADAMTS13Q76LX8 1427 aa25.17■■□□□ 1.62
LIG1-205ENST00000593425 PHLPP1O60346 1717 aa25.16■■□□□ 1.62
LIG1-205ENST00000593425 HDGFP51858 240 aaKnown RBP25.16■■□□□ 1.62
LIG1-205ENST00000593425 DIP2AQ14689 1571 aa25.15■■□□□ 1.62
LIG1-205ENST00000593425 NUTM2DQ5VT03 806 aaPredicted RBP25.15■■□□□ 1.62
LIG1-205ENST00000593425 NUP155O75694 1391 aa25.15■■□□□ 1.62
LIG1-205ENST00000593425 ITGAEP38570 1179 aa25.14■■□□□ 1.62
LIG1-205ENST00000593425 TBX22Q9Y458 520 aa25.14■■□□□ 1.62
LIG1-205ENST00000593425 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.13■■□□□ 1.61
LIG1-205ENST00000593425 PPARGC1BQ86YN6 1023 aaKnown RBP25.11■■□□□ 1.61
LIG1-205ENST00000593425 SLAIN2Q9P270 581 aa25.11■■□□□ 1.61
LIG1-205ENST00000593425 SPHKAPQ2M3C7 1700 aa25.11■■□□□ 1.61
LIG1-205ENST00000593425 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.09■■□□□ 1.61
LIG1-205ENST00000593425 COL16A1Q07092 1604 aaPredicted RBP25.08■■□□□ 1.61
LIG1-205ENST00000593425 NCOA3Q9Y6Q9 1424 aa25.08■■□□□ 1.61
LIG1-205ENST00000593425 TRPM2O94759 1503 aa25.07■■□□□ 1.6
LIG1-205ENST00000593425 NRXN3Q9Y4C0 1643 aa25.07■■□□□ 1.6
LIG1-205ENST00000593425 PIK3R4Q99570 1358 aa25.06■■□□□ 1.6
LIG1-205ENST00000593425 PTPRUQ92729 1446 aa25.04■■□□□ 1.6
LIG1-205ENST00000593425 POTEAQ6S8J7 498 aa25.04■■□□□ 1.6
LIG1-205ENST00000593425 C14orf37Q86TY3 774 aa25.02■■□□□ 1.6
LIG1-205ENST00000593425 XRN1Q8IZH2 1706 aaKnown RBP25.02■■□□□ 1.6
LIG1-205ENST00000593425 JCADQ9P266 1359 aa25.02■■□□□ 1.6
LIG1-205ENST00000593425 SETBP1Q9Y6X0 1596 aa25.01■■□□□ 1.59
LIG1-205ENST00000593425 CLTCL1P53675 1640 aa24.99■■□□□ 1.59
LIG1-205ENST00000593425 AHDC1Q5TGY3 1603 aaPredicted RBP24.99■■□□□ 1.59
LIG1-205ENST00000593425 AMOTL2Q9Y2J4 779 aa24.98■■□□□ 1.59
LIG1-205ENST00000593425 C19orf44Q9H6X5 657 aa24.97■■□□□ 1.59
LIG1-205ENST00000593425 CADPS2Q86UW7 1296 aa24.96■■□□□ 1.59
LIG1-205ENST00000593425 LRP6O75581 1613 aa24.96■■□□□ 1.59
LIG1-205ENST00000593425 SETD1AO15047 1707 aaKnown RBP24.95■■□□□ 1.59
LIG1-205ENST00000593425 RRBP1Q9P2E9 1410 aaKnown RBP24.95■■□□□ 1.58
LIG1-205ENST00000593425 SHPRHQ149N8 1683 aa24.94■■□□□ 1.58
LIG1-205ENST00000593425 ATF3P18847 181 aa24.94■■□□□ 1.58
LIG1-205ENST00000593425 NEXMIFQ5QGS0 1516 aa24.94■■□□□ 1.58
LIG1-205ENST00000593425 ZNF326Q5BKZ1 582 aaKnown RBP24.92■■□□□ 1.58
LIG1-205ENST00000593425 NAIPQ13075 1403 aa24.91■■□□□ 1.58
LIG1-205ENST00000593425 METP08581 1390 aa24.91■■□□□ 1.58
LIG1-205ENST00000593425 KIF1BO60333 1816 aa24.91■■□□□ 1.58
LIG1-205ENST00000593425 DCCP43146 1447 aa24.9■■□□□ 1.58
LIG1-205ENST00000593425 SPATA31A6Q5VVP1 1343 aa24.88■■□□□ 1.57
LIG1-205ENST00000593425 BRINP3Q76B58 766 aa24.88■■□□□ 1.57
LIG1-205ENST00000593425 ASXL1Q8IXJ9 1541 aa24.87■■□□□ 1.57
LIG1-205ENST00000593425 NALCNQ8IZF0 1738 aa24.87■■□□□ 1.57
LIG1-205ENST00000593425 MST1RQ04912 1400 aa24.86■■□□□ 1.57
LIG1-205ENST00000593425 NHSL1Q5SYE7 1610 aa24.86■■□□□ 1.57
LIG1-205ENST00000593425 ADGRL3Q9HAR2 1447 aa24.82■■□□□ 1.56
LIG1-205ENST00000593425 MEX3CQ5U5Q3 659 aaKnown RBP24.81■■□□□ 1.56
LIG1-205ENST00000593425 HFM1A2PYH4 1435 aa24.78■■□□□ 1.56
LIG1-205ENST00000593425 SETD5Q9C0A6 1442 aa24.78■■□□□ 1.56
LIG1-205ENST00000593425 PPLO60437 1756 aa24.75■■□□□ 1.55
LIG1-205ENST00000593425 NUTM2BA6NNL0 878 aaPredicted RBP24.74■■□□□ 1.55
LIG1-205ENST00000593425 NUTM2EB1AL46 878 aaPredicted RBP24.74■■□□□ 1.55
LIG1-205ENST00000593425 ZNF772Q68DY9 489 aaPredicted RBP24.74■■□□□ 1.55
LIG1-205ENST00000593425 NUTM2AQ8IVF1 878 aaPredicted RBP24.74■■□□□ 1.55
LIG1-205ENST00000593425 TRIM52Q96A61 297 aa24.74■■□□□ 1.55
LIG1-205ENST00000593425 PTCH1Q13635 1447 aa24.73■■□□□ 1.55
LIG1-205ENST00000593425 DDX17Q92841 729 aaKnown RBP24.73■■□□□ 1.55
LIG1-205ENST00000593425 ROBO2Q9HCK4 1378 aa24.7■■□□□ 1.55
LIG1-205ENST00000593425 C1orf167Q5SNV9 1468 aa24.7■■□□□ 1.54
LIG1-205ENST00000593425 LAMC1P11047 1609 aa24.69■■□□□ 1.54
LIG1-205ENST00000593425 VGFO15240 615 aaPredicted RBP24.69■■□□□ 1.54
LIG1-205ENST00000593425 SLC4A1APQ9BWU0 796 aaKnown RBP24.69■■□□□ 1.54
LIG1-205ENST00000593425 PRAG1Q86YV5 1406 aa24.69■■□□□ 1.54
LIG1-205ENST00000593425 PNPLA6Q8IY17 1366 aa24.67■■□□□ 1.54
LIG1-205ENST00000593425 LRRC59Q96AG4 307 aaKnown RBP24.67■■□□□ 1.54
LIG1-205ENST00000593425 AFF2P51816 1311 aa24.65■■□□□ 1.54
LIG1-205ENST00000593425 RPGRIP1LQ68CZ1 1315 aa24.65■■□□□ 1.54
LIG1-205ENST00000593425 FOXD1Q16676 465 aa24.63■■□□□ 1.53
LIG1-205ENST00000593425 RXRBP28702 533 aa24.62■■□□□ 1.53
LIG1-205ENST00000593425 CDK12Q9NYV4 1490 aaPredicted RBP24.62■■□□□ 1.53
LIG1-205ENST00000593425 IFT172Q9UG01 1749 aa24.61■■□□□ 1.53
LIG1-205ENST00000593425 ORAI2Q96SN7 254 aa24.61■■□□□ 1.53
LIG1-205ENST00000593425 UPF1Q92900 1129 aaKnown RBP eCLIP24.6■■□□□ 1.53
LIG1-205ENST00000593425 C8orf37Q96NL8 207 aa24.59■■□□□ 1.53
LIG1-205ENST00000593425 CDC42BPGQ6DT37 1551 aa24.58■■□□□ 1.52
LIG1-205ENST00000593425 SOS2Q07890 1332 aaPredicted RBP24.58■■□□□ 1.52
LIG1-205ENST00000593425 ADGRF5Q8IZF2 1346 aa24.56■■□□□ 1.52
LIG1-205ENST00000593425 CCDC144AA2RUR9 1427 aa24.55■■□□□ 1.52
LIG1-205ENST00000593425 SPATA31E1Q6ZUB1 1445 aa24.55■■□□□ 1.52
LIG1-205ENST00000593425 RGS12O14924 1447 aa24.54■■□□□ 1.52
LIG1-205ENST00000593425 COL22A1Q8NFW1 1626 aaPredicted RBP24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms