RNA–Protein interactions for RNA: ENST00000592776.1

PTPN2-215, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 5

Gene PTPN2, Length 772 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-215	ENST00000592776	BCAN	Q96GW7	911 aa		33.45	■■■□□ 2.95
PTPN2-215	ENST00000592776	TMEM131L	A2VDJ0	1609 aa		33.44	■■■□□ 2.94
PTPN2-215	ENST00000592776	ZFYVE9	O95405	1425 aa		33.42	■■■□□ 2.94
PTPN2-215	ENST00000592776	RIMS2	Q9UQ26	1411 aa		33.42	■■■□□ 2.94
PTPN2-215	ENST00000592776	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.4	■■■□□ 2.94
PTPN2-215	ENST00000592776	KCNA6	P17658	529 aa		33.38	■■■□□ 2.93
PTPN2-215	ENST00000592776	RBM33	Q96EV2	1170 aa	Known RBP	33.38	■■■□□ 2.93
PTPN2-215	ENST00000592776	NAIP	Q13075	1403 aa		33.37	■■■□□ 2.93
PTPN2-215	ENST00000592776	XIRP1	Q702N8	1843 aa	Known RBP	33.37	■■■□□ 2.93
PTPN2-215	ENST00000592776	PPP1R15A	O75807	674 aa	Predicted RBP	33.37	■■■□□ 2.93
PTPN2-215	ENST00000592776	ILDR2	Q71H61	639 aa		33.37	■■■□□ 2.93
PTPN2-215	ENST00000592776	PLEKHG1	Q9ULL1	1385 aa		33.33	■■■□□ 2.93
PTPN2-215	ENST00000592776	TMEM94	Q12767	1356 aa		33.32	■■■□□ 2.92
PTPN2-215	ENST00000592776	HDGF	P51858	240 aa	Known RBP	33.31	■■■□□ 2.92
PTPN2-215	ENST00000592776	PROSER2	Q86WR7	435 aa	Predicted RBP	33.31	■■■□□ 2.92
PTPN2-215	ENST00000592776	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.27	■■■□□ 2.92
PTPN2-215	ENST00000592776	SPHKAP	Q2M3C7	1700 aa		33.25	■■■□□ 2.91
PTPN2-215	ENST00000592776	NWD1	Q149M9	1564 aa		33.23	■■■□□ 2.91
PTPN2-215	ENST00000592776	TRIM52	Q96A61	297 aa		33.23	■■■□□ 2.91
PTPN2-215	ENST00000592776	TBX22	Q9Y458	520 aa		33.22	■■■□□ 2.91
PTPN2-215	ENST00000592776	HFM1	A2PYH4	1435 aa		33.21	■■■□□ 2.91
PTPN2-215	ENST00000592776	ADAMTS13	Q76LX8	1427 aa		33.2	■■■□□ 2.91
PTPN2-215	ENST00000592776	NKTR	P30414	1462 aa	Known RBP	33.18	■■■□□ 2.9
PTPN2-215	ENST00000592776	CHD2	O14647	1828 aa	Known RBP	33.18	■■■□□ 2.9
PTPN2-215	ENST00000592776	ZNF326	Q5BKZ1	582 aa	Known RBP	33.16	■■■□□ 2.9
PTPN2-215	ENST00000592776	CLTCL1	P53675	1640 aa		33.14	■■■□□ 2.9
PTPN2-215	ENST00000592776	MED1	Q15648	1581 aa	Predicted RBP	33.11	■■■□□ 2.89
PTPN2-215	ENST00000592776	TRPM2	O94759	1503 aa		33.09	■■■□□ 2.89
PTPN2-215	ENST00000592776	SLC4A1AP	Q9BWU0	796 aa	Known RBP	33.09	■■■□□ 2.89
PTPN2-215	ENST00000592776	FAM135B	Q49AJ0	1406 aa		33.07	■■■□□ 2.88
PTPN2-215	ENST00000592776	MSH6	P52701	1360 aa		33.07	■■■□□ 2.88
PTPN2-215	ENST00000592776	DIP2A	Q14689	1571 aa		33.06	■■■□□ 2.88
PTPN2-215	ENST00000592776	PTPRU	Q92729	1446 aa		33.06	■■■□□ 2.88
PTPN2-215	ENST00000592776	NRXN3	Q9Y4C0	1643 aa		33.04	■■■□□ 2.88
PTPN2-215	ENST00000592776	FOXD1	Q16676	465 aa		33.04	■■■□□ 2.88
PTPN2-215	ENST00000592776	AMOTL2	Q9Y2J4	779 aa		33.04	■■■□□ 2.88
PTPN2-215	ENST00000592776	PIK3R4	Q99570	1358 aa		33.02	■■■□□ 2.88
PTPN2-215	ENST00000592776	C14orf37	Q86TY3	774 aa		33.01	■■■□□ 2.87
PTPN2-215	ENST00000592776	NEXMIF	Q5QGS0	1516 aa		33.01	■■■□□ 2.87
PTPN2-215	ENST00000592776	ROBO1	Q9Y6N7	1651 aa		33.01	■■■□□ 2.87
PTPN2-215	ENST00000592776	SLAIN2	Q9P270	581 aa		33	■■■□□ 2.87
PTPN2-215	ENST00000592776	KIF1B	O60333	1816 aa		32.98	■■■□□ 2.87
PTPN2-215	ENST00000592776	SETBP1	Q9Y6X0	1596 aa		32.98	■■■□□ 2.87
PTPN2-215	ENST00000592776	MET	P08581	1390 aa		32.96	■■■□□ 2.87
PTPN2-215	ENST00000592776	SOCS7	O14512	581 aa		32.96	■■■□□ 2.87
PTPN2-215	ENST00000592776	NCOA3	Q9Y6Q9	1424 aa		32.93	■■■□□ 2.86
PTPN2-215	ENST00000592776	MPHOSPH9	Q99550	1183 aa		32.9	■■■□□ 2.86
PTPN2-215	ENST00000592776	PHF23	Q9BUL5	403 aa	Predicted RBP	32.9	■■■□□ 2.86
PTPN2-215	ENST00000592776	C19orf44	Q9H6X5	657 aa		32.9	■■■□□ 2.86
PTPN2-215	ENST00000592776	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.9	■■■□□ 2.86
PTPN2-215	ENST00000592776	XRN1	Q8IZH2	1706 aa	Known RBP	32.88	■■■□□ 2.85
PTPN2-215	ENST00000592776	ATF3	P18847	181 aa		32.86	■■■□□ 2.85
PTPN2-215	ENST00000592776	VGF	O15240	615 aa	Predicted RBP	32.84	■■■□□ 2.85
PTPN2-215	ENST00000592776	CADPS2	Q86UW7	1296 aa		32.84	■■■□□ 2.85
PTPN2-215	ENST00000592776	RPGRIP1L	Q68CZ1	1315 aa		32.81	■■■□□ 2.84
PTPN2-215	ENST00000592776	PHLPP1	O60346	1717 aa		32.8	■■■□□ 2.84
PTPN2-215	ENST00000592776	SETD5	Q9C0A6	1442 aa		32.79	■■■□□ 2.84
PTPN2-215	ENST00000592776	RGL3	Q3MIN7	710 aa		32.79	■■■□□ 2.84
PTPN2-215	ENST00000592776	RGS17	Q9UGC6	210 aa	Predicted RBP	32.77	■■■□□ 2.84
PTPN2-215	ENST00000592776	CCDC144A	A2RUR9	1427 aa		32.77	■■■□□ 2.84
PTPN2-215	ENST00000592776	PPL	O60437	1756 aa		32.76	■■■□□ 2.84
PTPN2-215	ENST00000592776	SETD1A	O15047	1707 aa	Known RBP	32.75	■■■□□ 2.83
PTPN2-215	ENST00000592776	BRINP3	Q76B58	766 aa		32.72	■■■□□ 2.83
PTPN2-215	ENST00000592776	ADGRF5	Q8IZF2	1346 aa		32.72	■■■□□ 2.83
PTPN2-215	ENST00000592776	SPATA31E1	Q6ZUB1	1445 aa		32.71	■■■□□ 2.83
PTPN2-215	ENST00000592776	COL16A1	Q07092	1604 aa	Predicted RBP	32.71	■■■□□ 2.83
PTPN2-215	ENST00000592776	RAB3GAP2	Q9H2M9	1393 aa		32.7	■■■□□ 2.82
PTPN2-215	ENST00000592776	ROBO2	Q9HCK4	1378 aa		32.69	■■■□□ 2.82
PTPN2-215	ENST00000592776	JCAD	Q9P266	1359 aa		32.69	■■■□□ 2.82
PTPN2-215	ENST00000592776	DCC	P43146	1447 aa		32.68	■■■□□ 2.82
PTPN2-215	ENST00000592776	MST1R	Q04912	1400 aa		32.68	■■■□□ 2.82
PTPN2-215	ENST00000592776	ADGRL3	Q9HAR2	1447 aa		32.68	■■■□□ 2.82
PTPN2-215	ENST00000592776	NALCN	Q8IZF0	1738 aa		32.66	■■■□□ 2.82
PTPN2-215	ENST00000592776	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.64	■■■□□ 2.82
PTPN2-215	ENST00000592776	PTCH1	Q13635	1447 aa		32.61	■■■□□ 2.81
PTPN2-215	ENST00000592776	DDX17	Q92841	729 aa	Known RBP	32.61	■■■□□ 2.81
PTPN2-215	ENST00000592776	ASXL1	Q8IXJ9	1541 aa		32.61	■■■□□ 2.81
PTPN2-215	ENST00000592776	POTEA	Q6S8J7	498 aa		32.59	■■■□□ 2.81
PTPN2-215	ENST00000592776	IFT172	Q9UG01	1749 aa		32.59	■■■□□ 2.81
PTPN2-215	ENST00000592776	ANKRD30B	Q9BXX2	1392 aa		32.58	■■■□□ 2.81
PTPN2-215	ENST00000592776	ACIN1	Q9UKV3	1341 aa	Known RBP	32.57	■■■□□ 2.8
PTPN2-215	ENST00000592776	STK26	Q9P289	416 aa		32.57	■■■□□ 2.8
PTPN2-215	ENST00000592776	TMEM132E	Q6IEE7	984 aa		32.56	■■■□□ 2.8
PTPN2-215	ENST00000592776	LRP6	O75581	1613 aa		32.55	■■■□□ 2.8
PTPN2-215	ENST00000592776	PRAG1	Q86YV5	1406 aa		32.54	■■■□□ 2.8
PTPN2-215	ENST00000592776	C1orf167	Q5SNV9	1468 aa		32.53	■■■□□ 2.8
PTPN2-215	ENST00000592776	SPATA31A6	Q5VVP1	1343 aa		32.51	■■■□□ 2.79
PTPN2-215	ENST00000592776	WAPL	Q7Z5K2	1190 aa		32.5	■■■□□ 2.79
PTPN2-215	ENST00000592776	ORAI2	Q96SN7	254 aa		32.5	■■■□□ 2.79
PTPN2-215	ENST00000592776	NHSL1	Q5SYE7	1610 aa		32.5	■■■□□ 2.79
PTPN2-215	ENST00000592776	PIK3C2G	O75747	1445 aa		32.5	■■■□□ 2.79
PTPN2-215	ENST00000592776	SHPRH	Q149N8	1683 aa		32.48	■■■□□ 2.79
PTPN2-215	ENST00000592776	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.48	■■■□□ 2.79
PTPN2-215	ENST00000592776	NUTM2E	B1AL46	878 aa	Predicted RBP	32.48	■■■□□ 2.79
PTPN2-215	ENST00000592776	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.48	■■■□□ 2.79
PTPN2-215	ENST00000592776	LRPPRC	P42704	1394 aa	Known RBP	32.46	■■■□□ 2.79
PTPN2-215	ENST00000592776	MEX3C	Q5U5Q3	659 aa	Known RBP	32.45	■■■□□ 2.79
PTPN2-215	ENST00000592776	PLEKHH1	Q9ULM0	1364 aa		32.45	■■■□□ 2.78
PTPN2-215	ENST00000592776	CFAP70	Q5T0N1	1121 aa		32.43	■■■□□ 2.78
PTPN2-215	ENST00000592776	LRRC59	Q96AG4	307 aa	Known RBP	32.42	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms