RNA–Protein interactions for RNA: ENST00000592412.5

CIRBP-238, Transcript of cold inducible RNA binding protein, human

TSL 4

Gene CIRBP, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-238	ENST00000592412	ZFYVE9	O95405	1425 aa		28.52	■■■□□ 2.16
CIRBP-238	ENST00000592412	ANKRD50	Q9ULJ7	1429 aa		28.52	■■■□□ 2.16
CIRBP-238	ENST00000592412	PROSER2	Q86WR7	435 aa	Predicted RBP	28.51	■■■□□ 2.15
CIRBP-238	ENST00000592412	MYO5B	Q9ULV0	1848 aa		28.5	■■■□□ 2.15
CIRBP-238	ENST00000592412	FAM50A	Q14320	339 aa	Known RBP	28.48	■■■□□ 2.15
CIRBP-238	ENST00000592412	GCC2	Q8IWJ2	1684 aa		28.48	■■■□□ 2.15
CIRBP-238	ENST00000592412	TMEM131L	A2VDJ0	1609 aa		28.47	■■■□□ 2.15
CIRBP-238	ENST00000592412	PLEKHG1	Q9ULL1	1385 aa		28.45	■■■□□ 2.14
CIRBP-238	ENST00000592412	UNC13B	O14795	1591 aa		28.44	■■■□□ 2.14
CIRBP-238	ENST00000592412	RIMS2	Q9UQ26	1411 aa		28.43	■■■□□ 2.14
CIRBP-238	ENST00000592412	CHD2	O14647	1828 aa	Known RBP	28.43	■■■□□ 2.14
CIRBP-238	ENST00000592412	MSH6	P52701	1360 aa		28.39	■■■□□ 2.14
CIRBP-238	ENST00000592412	POTEA	Q6S8J7	498 aa		28.39	■■■□□ 2.14
CIRBP-238	ENST00000592412	BCAN	Q96GW7	911 aa		28.39	■■■□□ 2.14
CIRBP-238	ENST00000592412		E9PCH4	1651 aa		28.38	■■■□□ 2.13
CIRBP-238	ENST00000592412	SLAIN2	Q9P270	581 aa		28.35	■■■□□ 2.13
CIRBP-238	ENST00000592412	ADAMTS13	Q76LX8	1427 aa		28.35	■■■□□ 2.13
CIRBP-238	ENST00000592412	PHLPP1	O60346	1717 aa		28.34	■■■□□ 2.13
CIRBP-238	ENST00000592412	PPP1R15A	O75807	674 aa	Predicted RBP	28.33	■■■□□ 2.13
CIRBP-238	ENST00000592412	TBX22	Q9Y458	520 aa		28.33	■■■□□ 2.13
CIRBP-238	ENST00000592412	IQGAP3	Q86VI3	1631 aa		28.32	■■■□□ 2.12
CIRBP-238	ENST00000592412	COL16A1	Q07092	1604 aa	Predicted RBP	28.3	■■■□□ 2.12
CIRBP-238	ENST00000592412	ROCK1	Q13464	1354 aa		28.3	■■■□□ 2.12
CIRBP-238	ENST00000592412	NCOA3	Q9Y6Q9	1424 aa		28.28	■■■□□ 2.12
CIRBP-238	ENST00000592412	HDGF	P51858	240 aa	Known RBP	28.28	■■■□□ 2.12
CIRBP-238	ENST00000592412	NUTM2D	Q5VT03	806 aa	Predicted RBP	28.28	■■■□□ 2.12
CIRBP-238	ENST00000592412	CHGA	P10645	457 aa	Known RBP	28.27	■■■□□ 2.12
CIRBP-238	ENST00000592412	DIP2A	Q14689	1571 aa		28.27	■■■□□ 2.12
CIRBP-238	ENST00000592412	JCAD	Q9P266	1359 aa		28.26	■■■□□ 2.12
CIRBP-238	ENST00000592412	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.26	■■■□□ 2.11
CIRBP-238	ENST00000592412	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	28.24	■■■□□ 2.11
CIRBP-238	ENST00000592412	PTPRU	Q92729	1446 aa		28.22	■■■□□ 2.11
CIRBP-238	ENST00000592412	PIK3R4	Q99570	1358 aa		28.22	■■■□□ 2.11
CIRBP-238	ENST00000592412	LRP6	O75581	1613 aa		28.21	■■■□□ 2.11
CIRBP-238	ENST00000592412	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.19	■■■□□ 2.1
CIRBP-238	ENST00000592412	SETD1A	O15047	1707 aa	Known RBP	28.19	■■■□□ 2.1
CIRBP-238	ENST00000592412	NUP155	O75694	1391 aa		28.19	■■■□□ 2.1
CIRBP-238	ENST00000592412	NRXN3	Q9Y4C0	1643 aa		28.18	■■■□□ 2.1
CIRBP-238	ENST00000592412	TRPM2	O94759	1503 aa		28.18	■■■□□ 2.1
CIRBP-238	ENST00000592412	C19orf44	Q9H6X5	657 aa		28.16	■■■□□ 2.1
CIRBP-238	ENST00000592412	C14orf37	Q86TY3	774 aa		28.15	■■■□□ 2.1
CIRBP-238	ENST00000592412	CADPS2	Q86UW7	1296 aa		28.14	■■■□□ 2.1
CIRBP-238	ENST00000592412	AMOTL2	Q9Y2J4	779 aa		28.14	■■■□□ 2.1
CIRBP-238	ENST00000592412	XRN1	Q8IZH2	1706 aa	Known RBP	28.13	■■■□□ 2.09
CIRBP-238	ENST00000592412	SHPRH	Q149N8	1683 aa		28.12	■■■□□ 2.09
CIRBP-238	ENST00000592412	SPATA31A6	Q5VVP1	1343 aa		28.11	■■■□□ 2.09
CIRBP-238	ENST00000592412	SETBP1	Q9Y6X0	1596 aa		28.11	■■■□□ 2.09
CIRBP-238	ENST00000592412	SPHKAP	Q2M3C7	1700 aa		28.1	■■■□□ 2.09
CIRBP-238	ENST00000592412	ATF3	P18847	181 aa		28.1	■■■□□ 2.09
CIRBP-238	ENST00000592412	ITGAE	P38570	1179 aa		28.1	■■■□□ 2.09
CIRBP-238	ENST00000592412	BRINP3	Q76B58	766 aa		28.08	■■■□□ 2.09
CIRBP-238	ENST00000592412	DCC	P43146	1447 aa		28.07	■■■□□ 2.08
CIRBP-238	ENST00000592412	MET	P08581	1390 aa		28.04	■■■□□ 2.08
CIRBP-238	ENST00000592412	ASXL1	Q8IXJ9	1541 aa		28.03	■■■□□ 2.08
CIRBP-238	ENST00000592412	MST1R	Q04912	1400 aa		28.02	■■■□□ 2.08
CIRBP-238	ENST00000592412	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.02	■■■□□ 2.08
CIRBP-238	ENST00000592412	CLTCL1	P53675	1640 aa		28.01	■■■□□ 2.07
CIRBP-238	ENST00000592412	NEXMIF	Q5QGS0	1516 aa		28	■■■□□ 2.07
CIRBP-238	ENST00000592412	NHSL1	Q5SYE7	1610 aa		28	■■■□□ 2.07
CIRBP-238	ENST00000592412	MEX3C	Q5U5Q3	659 aa	Known RBP	27.99	■■■□□ 2.07
CIRBP-238	ENST00000592412	ZNF326	Q5BKZ1	582 aa	Known RBP	27.97	■■■□□ 2.07
CIRBP-238	ENST00000592412	ZNF772	Q68DY9	489 aa	Predicted RBP	27.97	■■■□□ 2.07
CIRBP-238	ENST00000592412	SETD5	Q9C0A6	1442 aa		27.97	■■■□□ 2.07
CIRBP-238	ENST00000592412	NALCN	Q8IZF0	1738 aa		27.95	■■■□□ 2.06
CIRBP-238	ENST00000592412	ADGRL3	Q9HAR2	1447 aa		27.94	■■■□□ 2.06
CIRBP-238	ENST00000592412	TRIM52	Q96A61	297 aa		27.92	■■■□□ 2.06
CIRBP-238	ENST00000592412	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.91	■■■□□ 2.06
CIRBP-238	ENST00000592412	NUTM2E	B1AL46	878 aa	Predicted RBP	27.91	■■■□□ 2.06
CIRBP-238	ENST00000592412	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.91	■■■□□ 2.06
CIRBP-238	ENST00000592412	DDX17	Q92841	729 aa	Known RBP	27.9	■■■□□ 2.06
CIRBP-238	ENST00000592412	UPF1	Q92900	1129 aa	Known RBP eCLIP	27.9	■■■□□ 2.06
CIRBP-238	ENST00000592412	NAIP	Q13075	1403 aa		27.9	■■■□□ 2.06
CIRBP-238	ENST00000592412	RRBP1	Q9P2E9	1410 aa	Known RBP	27.87	■■■□□ 2.05
CIRBP-238	ENST00000592412	KIF1B	O60333	1816 aa		27.86	■■■□□ 2.05
CIRBP-238	ENST00000592412	AFF2	P51816	1311 aa		27.86	■■■□□ 2.05
CIRBP-238	ENST00000592412	PNPLA6	Q8IY17	1366 aa		27.86	■■■□□ 2.05
CIRBP-238	ENST00000592412	CDK12	Q9NYV4	1490 aa	Predicted RBP	27.85	■■■□□ 2.05
CIRBP-238	ENST00000592412	RXRB	P28702	533 aa		27.85	■■■□□ 2.05
CIRBP-238	ENST00000592412	LRRC59	Q96AG4	307 aa	Known RBP	27.84	■■■□□ 2.05
CIRBP-238	ENST00000592412	PTCH1	Q13635	1447 aa		27.83	■■■□□ 2.05
CIRBP-238	ENST00000592412	C1orf167	Q5SNV9	1468 aa		27.83	■■■□□ 2.04
CIRBP-238	ENST00000592412	LAMC1	P11047	1609 aa		27.81	■■■□□ 2.04
CIRBP-238	ENST00000592412	ROBO2	Q9HCK4	1378 aa		27.8	■■■□□ 2.04
CIRBP-238	ENST00000592412	PRAG1	Q86YV5	1406 aa		27.79	■■■□□ 2.04
CIRBP-238	ENST00000592412	C8orf37	Q96NL8	207 aa		27.76	■■■□□ 2.03
CIRBP-238	ENST00000592412	RGS12	O14924	1447 aa		27.75	■■■□□ 2.03
CIRBP-238	ENST00000592412	HFM1	A2PYH4	1435 aa		27.74	■■■□□ 2.03
CIRBP-238	ENST00000592412	VGF	O15240	615 aa	Predicted RBP	27.73	■■■□□ 2.03
CIRBP-238	ENST00000592412	ORAI2	Q96SN7	254 aa		27.73	■■■□□ 2.03
CIRBP-238	ENST00000592412	PPL	O60437	1756 aa		27.72	■■■□□ 2.03
CIRBP-238	ENST00000592412	SOS2	Q07890	1332 aa	Predicted RBP	27.71	■■■□□ 2.03
CIRBP-238	ENST00000592412	QTRT2	Q9H974	415 aa	Known RBP	27.71	■■■□□ 2.03
CIRBP-238	ENST00000592412	SRCAP	Q6ZRS2	3230 aa		27.69	■■■□□ 2.02
CIRBP-238	ENST00000592412	RPGRIP1L	Q68CZ1	1315 aa		27.68	■■■□□ 2.02
CIRBP-238	ENST00000592412	RBM6	P78332	1123 aa	Known RBP	27.68	■■■□□ 2.02
CIRBP-238	ENST00000592412	ADAMTS2	O95450	1211 aa		27.67	■■■□□ 2.02
CIRBP-238	ENST00000592412	SLC4A1AP	Q9BWU0	796 aa	Known RBP	27.65	■■■□□ 2.02
CIRBP-238	ENST00000592412	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.63	■■■□□ 2.01
CIRBP-238	ENST00000592412	NGLY1	Q96IV0	654 aa		27.63	■■■□□ 2.01
CIRBP-238	ENST00000592412	CDC42BPG	Q6DT37	1551 aa		27.62	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms