RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 E9PCH4 1651 aa14.89□□□□□ -0.03
BRCA1-227ENST00000591849 ILDR2Q71H61 639 aa14.88□□□□□ -0.03
BRCA1-227ENST00000591849 SLC26A8Q96RN1 970 aa14.88□□□□□ -0.03
BRCA1-227ENST00000591849 ARHGAP23Q9P227 1491 aa14.88□□□□□ -0.03
BRCA1-227ENST00000591849 ADGRB3O60242 1522 aa14.87□□□□□ -0.03
BRCA1-227ENST00000591849 SLIT1O75093 1534 aa14.87□□□□□ -0.03
BRCA1-227ENST00000591849 RAB3GAP2Q9H2M9 1393 aa14.87□□□□□ -0.03
BRCA1-227ENST00000591849 RIMS2Q9UQ26 1411 aa14.87□□□□□ -0.03
BRCA1-227ENST00000591849 STRCP1A6NGW2 1772 aa14.87□□□□□ -0.03
BRCA1-227ENST00000591849 SOCS7O14512 581 aa14.86□□□□□ -0.03
BRCA1-227ENST00000591849 KDM5AP29375 1690 aaKnown RBP14.85□□□□□ -0.03
BRCA1-227ENST00000591849 MED1Q15648 1581 aaPredicted RBP14.82□□□□□ -0.04
BRCA1-227ENST00000591849 ALKQ9UM73 1620 aa14.82□□□□□ -0.04
BRCA1-227ENST00000591849 TOM1O60784 492 aa14.82□□□□□ -0.04
BRCA1-227ENST00000591849 HRCP23327 699 aa14.82□□□□□ -0.04
BRCA1-227ENST00000591849 PLEKHG1Q9ULL1 1385 aa14.81□□□□□ -0.04
BRCA1-227ENST00000591849 KCNA6P17658 529 aa14.8□□□□□ -0.04
BRCA1-227ENST00000591849 RGL3Q3MIN7 710 aa14.8□□□□□ -0.04
BRCA1-227ENST00000591849 CCDC144AA2RUR9 1427 aa14.79□□□□□ -0.04
BRCA1-227ENST00000591849 TMEM131LA2VDJ0 1609 aa14.79□□□□□ -0.04
BRCA1-227ENST00000591849 VGFO15240 615 aaPredicted RBP14.79□□□□□ -0.04
BRCA1-227ENST00000591849 TRPM2O94759 1503 aa14.79□□□□□ -0.04
BRCA1-227ENST00000591849 ZFYVE9O95405 1425 aa14.79□□□□□ -0.04
BRCA1-227ENST00000591849 XIRP1Q702N8 1843 aaKnown RBP14.79□□□□□ -0.04
BRCA1-227ENST00000591849 PROSER2Q86WR7 435 aaPredicted RBP14.79□□□□□ -0.04
BRCA1-227ENST00000591849 SCAF1Q9H7N4 1312 aaKnown RBP14.79□□□□□ -0.04
BRCA1-227ENST00000591849 TBX22Q9Y458 520 aa14.79□□□□□ -0.04
BRCA1-227ENST00000591849 SPHKAPQ2M3C7 1700 aa14.78□□□□□ -0.04
BRCA1-227ENST00000591849 LRRC7Q96NW7 1537 aa14.78□□□□□ -0.04
BRCA1-227ENST00000591849 RPGRIP1LQ68CZ1 1315 aa14.78□□□□□ -0.04
BRCA1-227ENST00000591849 PIP4K2BP78356 416 aa14.76□□□□□ -0.05
BRCA1-227ENST00000591849 CLTCL1P53675 1640 aa14.74□□□□□ -0.05
BRCA1-227ENST00000591849 HSPA1LP34931 641 aa14.74□□□□□ -0.05
BRCA1-227ENST00000591849 TRIM26Q12899 539 aaPredicted RBP14.74□□□□□ -0.05
BRCA1-227ENST00000591849 C14orf37Q86TY3 774 aa14.74□□□□□ -0.05
BRCA1-227ENST00000591849 MYO5BQ9ULV0 1848 aa14.72□□□□□ -0.05
BRCA1-227ENST00000591849 RBM33Q96EV2 1170 aaKnown RBP14.72□□□□□ -0.05
BRCA1-227ENST00000591849 AMOTL2Q9Y2J4 779 aa14.72□□□□□ -0.05
BRCA1-227ENST00000591849 TMEM94Q12767 1356 aa14.7□□□□□ -0.06
BRCA1-227ENST00000591849 KIF1BO60333 1816 aa14.69□□□□□ -0.06
BRCA1-227ENST00000591849 ADAMTS13Q76LX8 1427 aa14.69□□□□□ -0.06
BRCA1-227ENST00000591849 PIK3R4Q99570 1358 aa14.69□□□□□ -0.06
BRCA1-227ENST00000591849 ANKRD30BQ9BXX2 1392 aa14.68□□□□□ -0.06
BRCA1-227ENST00000591849 NWD1Q149M9 1564 aa14.68□□□□□ -0.06
BRCA1-227ENST00000591849 NEXMIFQ5QGS0 1516 aa14.66□□□□□ -0.06
BRCA1-227ENST00000591849 ADGRF5Q8IZF2 1346 aa14.66□□□□□ -0.06
BRCA1-227ENST00000591849 NKTRP30414 1462 aaKnown RBP14.65□□□□□ -0.06
BRCA1-227ENST00000591849 MSH6P52701 1360 aa14.65□□□□□ -0.06
BRCA1-227ENST00000591849 KDM2AQ9Y2K7 1162 aa14.65□□□□□ -0.06
BRCA1-227ENST00000591849 SPATA31E1Q6ZUB1 1445 aa14.65□□□□□ -0.06
BRCA1-227ENST00000591849 DIP2AQ14689 1571 aa14.64□□□□□ -0.07
BRCA1-227ENST00000591849 METP08581 1390 aa14.64□□□□□ -0.07
BRCA1-227ENST00000591849 ATF3P18847 181 aa14.63□□□□□ -0.07
BRCA1-227ENST00000591849 DCAF11Q8TEB1 546 aa14.63□□□□□ -0.07
BRCA1-227ENST00000591849 CHD2O14647 1828 aaKnown RBP14.62□□□□□ -0.07
BRCA1-227ENST00000591849 PHF23Q9BUL5 403 aaPredicted RBP14.62□□□□□ -0.07
BRCA1-227ENST00000591849 C19orf44Q9H6X5 657 aa14.62□□□□□ -0.07
BRCA1-227ENST00000591849 STK26Q9P289 416 aa14.62□□□□□ -0.07
BRCA1-227ENST00000591849 SETBP1Q9Y6X0 1596 aa14.62□□□□□ -0.07
BRCA1-227ENST00000591849 ROBO1Q9Y6N7 1651 aa14.61□□□□□ -0.07
BRCA1-227ENST00000591849 PTPRUQ92729 1446 aa14.61□□□□□ -0.07
BRCA1-227ENST00000591849 CADPS2Q86UW7 1296 aa14.6□□□□□ -0.07
BRCA1-227ENST00000591849 FAM135BQ49AJ0 1406 aa14.59□□□□□ -0.07
BRCA1-227ENST00000591849 TMEM132EQ6IEE7 984 aa14.59□□□□□ -0.07
BRCA1-227ENST00000591849 STAC3Q96MF2 364 aa14.59□□□□□ -0.07
BRCA1-227ENST00000591849 SLAIN2Q9P270 581 aa14.59□□□□□ -0.07
BRCA1-227ENST00000591849 NCOA3Q9Y6Q9 1424 aa14.58□□□□□ -0.07
BRCA1-227ENST00000591849 NEUROD1Q13562 356 aa14.58□□□□□ -0.08
BRCA1-227ENST00000591849 CFAP70Q5T0N1 1121 aa14.57□□□□□ -0.08
BRCA1-227ENST00000591849 C14orf93Q9H972 538 aaKnown RBP14.57□□□□□ -0.08
BRCA1-227ENST00000591849 NRXN3Q9Y4C0 1643 aa14.55□□□□□ -0.08
BRCA1-227ENST00000591849 DHX57Q6P158 1386 aaKnown RBP14.55□□□□□ -0.08
BRCA1-227ENST00000591849 PHLPP1O60346 1717 aa14.55□□□□□ -0.08
BRCA1-227ENST00000591849 PPLO60437 1756 aa14.55□□□□□ -0.08
BRCA1-227ENST00000591849 SIN3AQ96ST3 1273 aa14.54□□□□□ -0.08
BRCA1-227ENST00000591849 PIK3C2GO75747 1445 aa14.52□□□□□ -0.08
BRCA1-227ENST00000591849 LRPPRCP42704 1394 aaKnown RBP14.52□□□□□ -0.08
BRCA1-227ENST00000591849 ROBO2Q9HCK4 1378 aa14.52□□□□□ -0.08
BRCA1-227ENST00000591849 PCGF6Q9BYE7 350 aa14.52□□□□□ -0.09
BRCA1-227ENST00000591849 POGKQ9P215 609 aa14.52□□□□□ -0.09
BRCA1-227ENST00000591849 MYOM2P54296 1465 aa14.51□□□□□ -0.09
BRCA1-227ENST00000591849 WAPLQ7Z5K2 1190 aa14.51□□□□□ -0.09
BRCA1-227ENST00000591849 ABCC11Q96J66 1382 aa14.5□□□□□ -0.09
BRCA1-227ENST00000591849 PTCH1Q13635 1447 aa14.49□□□□□ -0.09
BRCA1-227ENST00000591849 COL16A1Q07092 1604 aaPredicted RBP14.49□□□□□ -0.09
BRCA1-227ENST00000591849 SAFB2Q14151 953 aaKnown RBP eCLIP14.49□□□□□ -0.091e-6■□□□□ 10.7
BRCA1-227ENST00000591849 TRAK1Q9UPV9 953 aa14.49□□□□□ -0.09
BRCA1-227ENST00000591849 YTHDC2Q9H6S0 1430 aaKnown RBP14.49□□□□□ -0.09
BRCA1-227ENST00000591849 ADGRL3Q9HAR2 1447 aa14.49□□□□□ -0.09
BRCA1-227ENST00000591849 L3MBTL2Q969R5 705 aa14.48□□□□□ -0.09
BRCA1-227ENST00000591849 XRN1Q8IZH2 1706 aaKnown RBP14.48□□□□□ -0.09
BRCA1-227ENST00000591849 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.48□□□□□ -0.09
BRCA1-227ENST00000591849 NRXN1Q9ULB1 1477 aa14.47□□□□□ -0.09
BRCA1-227ENST00000591849 SIRT1Q96EB6 747 aa14.47□□□□□ -0.09
BRCA1-227ENST00000591849 PRAM1Q96QH2 718 aa14.47□□□□□ -0.09
BRCA1-227ENST00000591849 DCCP43146 1447 aa14.47□□□□□ -0.09
BRCA1-227ENST00000591849 BRINP3Q76B58 766 aa14.46□□□□□ -0.09
BRCA1-227ENST00000591849 SHPRHQ149N8 1683 aa14.46□□□□□ -0.1
BRCA1-227ENST00000591849 NUTM2FA1L443 756 aa14.45□□□□□ -0.1
BRCA1-227ENST00000591849 IFT172Q9UG01 1749 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms