RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 SLC52A1Q9NWF4 448 aa27.23■■□□□ 1.95
RETREG3-210ENST00000590541 SETD1AO15047 1707 aaKnown RBP27.23■■□□□ 1.95
RETREG3-210ENST00000590541 FGD6Q6ZV73 1430 aa27.22■■□□□ 1.95
RETREG3-210ENST00000590541 JCADQ9P266 1359 aa27.22■■□□□ 1.95
RETREG3-210ENST00000590541 BCANQ96GW7 911 aa27.21■■□□□ 1.95
RETREG3-210ENST00000590541 ZFYVE9O95405 1425 aa27.19■■□□□ 1.94
RETREG3-210ENST00000590541 CHD2O14647 1828 aaKnown RBP27.17■■□□□ 1.94
RETREG3-210ENST00000590541 PLEKHG1Q9ULL1 1385 aa27.17■■□□□ 1.94
RETREG3-210ENST00000590541 COL16A1Q07092 1604 aaPredicted RBP27.16■■□□□ 1.94
RETREG3-210ENST00000590541 RPRD2Q5VT52 1461 aaKnown RBP27.13■■□□□ 1.93
RETREG3-210ENST00000590541 RIMS2Q9UQ26 1411 aa27.13■■□□□ 1.93
RETREG3-210ENST00000590541 MYO5BQ9ULV0 1848 aa27.13■■□□□ 1.93
RETREG3-210ENST00000590541 ADGRL2O95490 1459 aa27.13■■□□□ 1.93
RETREG3-210ENST00000590541 LRP6O75581 1613 aa27.12■■□□□ 1.93
RETREG3-210ENST00000590541 NCOA3Q9Y6Q9 1424 aa27.1■■□□□ 1.93
RETREG3-210ENST00000590541 APLP2Q06481 763 aa27.1■■□□□ 1.93
RETREG3-210ENST00000590541 GCC2Q8IWJ2 1684 aa27.1■■□□□ 1.93
RETREG3-210ENST00000590541 TMEM131LA2VDJ0 1609 aa27.09■■□□□ 1.93
RETREG3-210ENST00000590541 TBX22Q9Y458 520 aa27.09■■□□□ 1.93
RETREG3-210ENST00000590541 PPP1R15AO75807 674 aaPredicted RBP27.08■■□□□ 1.93
RETREG3-210ENST00000590541 SPATA31A6Q5VVP1 1343 aa27.08■■□□□ 1.93
RETREG3-210ENST00000590541 HDGFP51858 240 aaKnown RBP27.07■■□□□ 1.92
RETREG3-210ENST00000590541 ANKRD50Q9ULJ7 1429 aa27.06■■□□□ 1.92
RETREG3-210ENST00000590541 ADAMTS13Q76LX8 1427 aa27.04■■□□□ 1.92
RETREG3-210ENST00000590541 AHDC1Q5TGY3 1603 aaPredicted RBP27.04■■□□□ 1.92
RETREG3-210ENST00000590541 UPF1Q92900 1129 aaKnown RBP eCLIP27.03■■□□□ 1.92
RETREG3-210ENST00000590541 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.02■■□□□ 1.92
RETREG3-210ENST00000590541 ZNF772Q68DY9 489 aaPredicted RBP27.02■■□□□ 1.92
RETREG3-210ENST00000590541 MEX3CQ5U5Q3 659 aaKnown RBP27.01■■□□□ 1.91
RETREG3-210ENST00000590541 C14orf37Q86TY3 774 aa27.01■■□□□ 1.91
RETREG3-210ENST00000590541 SHPRHQ149N8 1683 aa27.01■■□□□ 1.91
RETREG3-210ENST00000590541 CADPS2Q86UW7 1296 aa27■■□□□ 1.91
RETREG3-210ENST00000590541 ABCF1Q8NE71 845 aaKnown RBP eCLIP27■■□□□ 1.91
RETREG3-210ENST00000590541 C19orf44Q9H6X5 657 aa27■■□□□ 1.91
RETREG3-210ENST00000590541 NUTM2DQ5VT03 806 aaPredicted RBP26.99■■□□□ 1.91
RETREG3-210ENST00000590541 TRIM52Q96A61 297 aa26.99■■□□□ 1.91
RETREG3-210ENST00000590541 PIK3R4Q99570 1358 aa26.97■■□□□ 1.91
RETREG3-210ENST00000590541 DIP2AQ14689 1571 aa26.97■■□□□ 1.91
RETREG3-210ENST00000590541 CHGAP10645 457 aaKnown RBP26.97■■□□□ 1.91
RETREG3-210ENST00000590541 ATF3P18847 181 aa26.97■■□□□ 1.91
RETREG3-210ENST00000590541 FAM50AQ14320 339 aaKnown RBP26.95■■□□□ 1.9
RETREG3-210ENST00000590541 UNC13BO14795 1591 aa26.93■■□□□ 1.9
RETREG3-210ENST00000590541 BRINP3Q76B58 766 aa26.93■■□□□ 1.9
RETREG3-210ENST00000590541 E9PCH4 1651 aa26.92■■□□□ 1.9
RETREG3-210ENST00000590541 PTPRUQ92729 1446 aa26.92■■□□□ 1.9
RETREG3-210ENST00000590541 RXRBP28702 533 aa26.91■■□□□ 1.9
RETREG3-210ENST00000590541 AMOTL2Q9Y2J4 779 aa26.9■■□□□ 1.9
RETREG3-210ENST00000590541 TRPM2O94759 1503 aa26.9■■□□□ 1.9
RETREG3-210ENST00000590541 NUTM2BA6NNL0 878 aaPredicted RBP26.87■■□□□ 1.89
RETREG3-210ENST00000590541 NUTM2EB1AL46 878 aaPredicted RBP26.87■■□□□ 1.89
RETREG3-210ENST00000590541 NUTM2AQ8IVF1 878 aaPredicted RBP26.87■■□□□ 1.89
RETREG3-210ENST00000590541 CDK12Q9NYV4 1490 aaPredicted RBP26.87■■□□□ 1.89
RETREG3-210ENST00000590541 DCCP43146 1447 aa26.85■■□□□ 1.89
RETREG3-210ENST00000590541 ASXL1Q8IXJ9 1541 aa26.85■■□□□ 1.89
RETREG3-210ENST00000590541 SETD5Q9C0A6 1442 aa26.83■■□□□ 1.89
RETREG3-210ENST00000590541 AFF2P51816 1311 aa26.83■■□□□ 1.89
RETREG3-210ENST00000590541 IQGAP3Q86VI3 1631 aa26.83■■□□□ 1.88
RETREG3-210ENST00000590541 MST1RQ04912 1400 aa26.82■■□□□ 1.88
RETREG3-210ENST00000590541 NRXN3Q9Y4C0 1643 aa26.81■■□□□ 1.88
RETREG3-210ENST00000590541 XRN1Q8IZH2 1706 aaKnown RBP26.81■■□□□ 1.88
RETREG3-210ENST00000590541 NHSL1Q5SYE7 1610 aa26.79■■□□□ 1.88
RETREG3-210ENST00000590541 SETBP1Q9Y6X0 1596 aa26.76■■□□□ 1.87
RETREG3-210ENST00000590541 ROCK1Q13464 1354 aa26.76■■□□□ 1.87
RETREG3-210ENST00000590541 LRRC59Q96AG4 307 aaKnown RBP26.75■■□□□ 1.87
RETREG3-210ENST00000590541 RGS12O14924 1447 aa26.74■■□□□ 1.87
RETREG3-210ENST00000590541 NUP155O75694 1391 aa26.74■■□□□ 1.87
RETREG3-210ENST00000590541 METP08581 1390 aa26.73■■□□□ 1.87
RETREG3-210ENST00000590541 DDX17Q92841 729 aaKnown RBP26.73■■□□□ 1.87
RETREG3-210ENST00000590541 PNPLA6Q8IY17 1366 aa26.72■■□□□ 1.87
RETREG3-210ENST00000590541 C8orf37Q96NL8 207 aa26.72■■□□□ 1.87
RETREG3-210ENST00000590541 QTRT2Q9H974 415 aaKnown RBP26.71■■□□□ 1.87
RETREG3-210ENST00000590541 RBM6P78332 1123 aaKnown RBP26.7■■□□□ 1.86
RETREG3-210ENST00000590541 ADGRL3Q9HAR2 1447 aa26.69■■□□□ 1.86
RETREG3-210ENST00000590541 NALCNQ8IZF0 1738 aa26.65■■□□□ 1.86
RETREG3-210ENST00000590541 ZNF326Q5BKZ1 582 aaKnown RBP26.65■■□□□ 1.86
RETREG3-210ENST00000590541 SPHKAPQ2M3C7 1700 aa26.65■■□□□ 1.86
RETREG3-210ENST00000590541 C1orf167Q5SNV9 1468 aa26.61■■□□□ 1.85
RETREG3-210ENST00000590541 ADAMTS2O95450 1211 aa26.6■■□□□ 1.85
RETREG3-210ENST00000590541 NGLY1Q96IV0 654 aa26.6■■□□□ 1.85
RETREG3-210ENST00000590541 NEXMIFQ5QGS0 1516 aa26.6■■□□□ 1.85
RETREG3-210ENST00000590541 LAMC1P11047 1609 aa26.59■■□□□ 1.85
RETREG3-210ENST00000590541 ITGAEP38570 1179 aa26.56■■□□□ 1.84
RETREG3-210ENST00000590541 SOS2Q07890 1332 aaPredicted RBP26.55■■□□□ 1.84
RETREG3-210ENST00000590541 CLTCL1P53675 1640 aa26.54■■□□□ 1.84
RETREG3-210ENST00000590541 ORAI2Q96SN7 254 aa26.53■■□□□ 1.84
RETREG3-210ENST00000590541 ATAD2Q6PL18 1390 aa26.53■■□□□ 1.84
RETREG3-210ENST00000590541 PTCH1Q13635 1447 aa26.52■■□□□ 1.84
RETREG3-210ENST00000590541 USP21Q9UK80 565 aa26.52■■□□□ 1.84
RETREG3-210ENST00000590541 ROBO2Q9HCK4 1378 aa26.5■■□□□ 1.83
RETREG3-210ENST00000590541 SRCAPQ6ZRS2 3230 aa26.5■■□□□ 1.83
RETREG3-210ENST00000590541 FNBP4Q8N3X1 1017 aaPredicted RBP26.5■■□□□ 1.83
RETREG3-210ENST00000590541 TRPC5Q9UL62 973 aaPredicted RBP26.5■■□□□ 1.83
RETREG3-210ENST00000590541 ATRNO75882 1429 aa26.47■■□□□ 1.83
RETREG3-210ENST00000590541 COL22A1Q8NFW1 1626 aaPredicted RBP26.46■■□□□ 1.83
RETREG3-210ENST00000590541 PRAG1Q86YV5 1406 aa26.45■■□□□ 1.82
RETREG3-210ENST00000590541 KIF1BO60333 1816 aa26.44■■□□□ 1.82
RETREG3-210ENST00000590541 MYOM2P54296 1465 aa26.42■■□□□ 1.82
RETREG3-210ENST00000590541 VGFO15240 615 aaPredicted RBP26.41■■□□□ 1.82
RETREG3-210ENST00000590541 ZRANB1Q9UGI0 708 aa26.4■■□□□ 1.82
RETREG3-210ENST00000590541 BCL9LQ86UU0 1499 aa26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms