RNA–Protein interactions for RNA: ENST00000590035.5

RETREG3-209, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 518 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-209ENST00000590035 FAM50AQ14320 339 aaKnown RBP16.16■□□□□ 0.18
RETREG3-209ENST00000590035 MYO5BQ9ULV0 1848 aa16.16■□□□□ 0.18
RETREG3-209ENST00000590035 IQGAP3Q86VI3 1631 aa16.16■□□□□ 0.18
RETREG3-209ENST00000590035 E9PCH4 1651 aa16.15■□□□□ 0.18
RETREG3-209ENST00000590035 NKTRP30414 1462 aaKnown RBP16.15■□□□□ 0.18
RETREG3-209ENST00000590035 SCAF1Q9H7N4 1312 aaKnown RBP16.15■□□□□ 0.18
RETREG3-209ENST00000590035 KCNA6P17658 529 aa16.14■□□□□ 0.17
RETREG3-209ENST00000590035 TMEM94Q12767 1356 aa16.13■□□□□ 0.17
RETREG3-209ENST00000590035 FAM135BQ49AJ0 1406 aa16.12■□□□□ 0.17
RETREG3-209ENST00000590035 PLEKHG1Q9ULL1 1385 aa16.12■□□□□ 0.17
RETREG3-209ENST00000590035 STAG3Q9UJ98 1225 aa16.11■□□□□ 0.17
RETREG3-209ENST00000590035 CHD2O14647 1828 aaKnown RBP16.1■□□□□ 0.17
RETREG3-209ENST00000590035 RIMS2Q9UQ26 1411 aa16.1■□□□□ 0.17
RETREG3-209ENST00000590035 SLC26A8Q96RN1 970 aa16.09■□□□□ 0.17
RETREG3-209ENST00000590035 ADAMTS13Q76LX8 1427 aa16.08■□□□□ 0.16
RETREG3-209ENST00000590035 ROBO1Q9Y6N7 1651 aa16.05■□□□□ 0.16
RETREG3-209ENST00000590035 DIP2AQ14689 1571 aa16.05■□□□□ 0.16
RETREG3-209ENST00000590035 TBX22Q9Y458 520 aa16.04■□□□□ 0.16
RETREG3-209ENST00000590035 NCOA3Q9Y6Q9 1424 aa16.03■□□□□ 0.16
RETREG3-209ENST00000590035 PROSER2Q86WR7 435 aaPredicted RBP16.03■□□□□ 0.16
RETREG3-209ENST00000590035 RRBP1Q9P2E9 1410 aaKnown RBP16.02■□□□□ 0.16
RETREG3-209ENST00000590035 NUP155O75694 1391 aa16.02■□□□□ 0.16
RETREG3-209ENST00000590035 PIK3R4Q99570 1358 aa16.01■□□□□ 0.15
RETREG3-209ENST00000590035 NRXN3Q9Y4C0 1643 aa16.01■□□□□ 0.15
RETREG3-209ENST00000590035 SPHKAPQ2M3C7 1700 aa16■□□□□ 0.15
RETREG3-209ENST00000590035 ABCF1Q8NE71 845 aaKnown RBP eCLIP16■□□□□ 0.15
RETREG3-209ENST00000590035 RBM33Q96EV2 1170 aaKnown RBP16■□□□□ 0.15
RETREG3-209ENST00000590035 RGS17Q9UGC6 210 aaPredicted RBP16■□□□□ 0.15
RETREG3-209ENST00000590035 HDGFP51858 240 aaKnown RBP15.99■□□□□ 0.15
RETREG3-209ENST00000590035 SETBP1Q9Y6X0 1596 aa15.98■□□□□ 0.15
RETREG3-209ENST00000590035 MSH6P52701 1360 aa15.98■□□□□ 0.15
RETREG3-209ENST00000590035 PTPRUQ92729 1446 aa15.97■□□□□ 0.15
RETREG3-209ENST00000590035 XRN1Q8IZH2 1706 aaKnown RBP15.97■□□□□ 0.15
RETREG3-209ENST00000590035 NAIPQ13075 1403 aa15.96■□□□□ 0.15
RETREG3-209ENST00000590035 TRPM2O94759 1503 aa15.96■□□□□ 0.15
RETREG3-209ENST00000590035 COL16A1Q07092 1604 aaPredicted RBP15.95■□□□□ 0.14
RETREG3-209ENST00000590035 PPP1R15AO75807 674 aaPredicted RBP15.95■□□□□ 0.14
RETREG3-209ENST00000590035 SLAIN2Q9P270 581 aa15.95■□□□□ 0.14
RETREG3-209ENST00000590035 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.94■□□□□ 0.14
RETREG3-209ENST00000590035 CLTCL1P53675 1640 aa15.94■□□□□ 0.14
RETREG3-209ENST00000590035 PHLPP1O60346 1717 aa15.93■□□□□ 0.14
RETREG3-209ENST00000590035 NEXMIFQ5QGS0 1516 aa15.93■□□□□ 0.14
RETREG3-209ENST00000590035 CHGAP10645 457 aaKnown RBP15.92■□□□□ 0.14
RETREG3-209ENST00000590035 ITGAEP38570 1179 aa15.92■□□□□ 0.14
RETREG3-209ENST00000590035 NUTM2DQ5VT03 806 aaPredicted RBP15.92■□□□□ 0.14
RETREG3-209ENST00000590035 PPARGC1BQ86YN6 1023 aaKnown RBP15.92■□□□□ 0.14
RETREG3-209ENST00000590035 BCANQ96GW7 911 aa15.92■□□□□ 0.14
RETREG3-209ENST00000590035 AHDC1Q5TGY3 1603 aaPredicted RBP15.92■□□□□ 0.14
RETREG3-209ENST00000590035 HFM1A2PYH4 1435 aa15.9■□□□□ 0.14
RETREG3-209ENST00000590035 DCCP43146 1447 aa15.9■□□□□ 0.14
RETREG3-209ENST00000590035 C19orf44Q9H6X5 657 aa15.89■□□□□ 0.13
RETREG3-209ENST00000590035 JCADQ9P266 1359 aa15.88■□□□□ 0.13
RETREG3-209ENST00000590035 AMOTL2Q9Y2J4 779 aa15.88■□□□□ 0.13
RETREG3-209ENST00000590035 SETD1AO15047 1707 aaKnown RBP15.88■□□□□ 0.13
RETREG3-209ENST00000590035 METP08581 1390 aa15.87■□□□□ 0.13
RETREG3-209ENST00000590035 CADPS2Q86UW7 1296 aa15.87■□□□□ 0.13
RETREG3-209ENST00000590035 PRAG1Q86YV5 1406 aa15.86■□□□□ 0.13
RETREG3-209ENST00000590035 POTEAQ6S8J7 498 aa15.86■□□□□ 0.13
RETREG3-209ENST00000590035 LRP6O75581 1613 aa15.86■□□□□ 0.13
RETREG3-209ENST00000590035 SHPRHQ149N8 1683 aa15.86■□□□□ 0.13
RETREG3-209ENST00000590035 MST1RQ04912 1400 aa15.85■□□□□ 0.13
RETREG3-209ENST00000590035 KIF1BO60333 1816 aa15.84■□□□□ 0.13
RETREG3-209ENST00000590035 NHSL1Q5SYE7 1610 aa15.83■□□□□ 0.12
RETREG3-209ENST00000590035 BRINP3Q76B58 766 aa15.82■□□□□ 0.12
RETREG3-209ENST00000590035 ADGRL3Q9HAR2 1447 aa15.82■□□□□ 0.12
RETREG3-209ENST00000590035 ASXL1Q8IXJ9 1541 aa15.82■□□□□ 0.12
RETREG3-209ENST00000590035 NALCNQ8IZF0 1738 aa15.82■□□□□ 0.12
RETREG3-209ENST00000590035 PTCH1Q13635 1447 aa15.81■□□□□ 0.12
RETREG3-209ENST00000590035 SPATA31A6Q5VVP1 1343 aa15.81■□□□□ 0.12
RETREG3-209ENST00000590035 ATF3P18847 181 aa15.8■□□□□ 0.12
RETREG3-209ENST00000590035 LAMC1P11047 1609 aa15.79■□□□□ 0.12
RETREG3-209ENST00000590035 SETD5Q9C0A6 1442 aa15.79■□□□□ 0.12
RETREG3-209ENST00000590035 PPLO60437 1756 aa15.79■□□□□ 0.12
RETREG3-209ENST00000590035 ZNF326Q5BKZ1 582 aaKnown RBP15.78■□□□□ 0.12
RETREG3-209ENST00000590035 C14orf37Q86TY3 774 aa15.78■□□□□ 0.12
RETREG3-209ENST00000590035 RPGRIP1LQ68CZ1 1315 aa15.76■□□□□ 0.11
RETREG3-209ENST00000590035 PPP4R3CPQ6ZMV5 832 aa15.76■□□□□ 0.11
RETREG3-209ENST00000590035 ROBO2Q9HCK4 1378 aa15.75■□□□□ 0.11
RETREG3-209ENST00000590035 SPATA31E1Q6ZUB1 1445 aa15.74■□□□□ 0.11
RETREG3-209ENST00000590035 C1orf167Q5SNV9 1468 aa15.73■□□□□ 0.11
RETREG3-209ENST00000590035 VGFO15240 615 aaPredicted RBP15.73■□□□□ 0.11
RETREG3-209ENST00000590035 IFT172Q9UG01 1749 aa15.73■□□□□ 0.11
RETREG3-209ENST00000590035 SLC4A1APQ9BWU0 796 aaKnown RBP15.72■□□□□ 0.11
RETREG3-209ENST00000590035 TRIM52Q96A61 297 aa15.7■□□□□ 0.1
RETREG3-209ENST00000590035 PNPLA6Q8IY17 1366 aa15.7■□□□□ 0.1
RETREG3-209ENST00000590035 TECPR2O15040 1411 aa15.69■□□□□ 0.1
RETREG3-209ENST00000590035 CDC42BPGQ6DT37 1551 aa15.68■□□□□ 0.1
RETREG3-209ENST00000590035 CDK12Q9NYV4 1490 aaPredicted RBP15.68■□□□□ 0.1
RETREG3-209ENST00000590035 ZNF772Q68DY9 489 aaPredicted RBP15.67■□□□□ 0.1
RETREG3-209ENST00000590035 LRRC59Q96AG4 307 aaKnown RBP15.67■□□□□ 0.1
RETREG3-209ENST00000590035 SOS2Q07890 1332 aaPredicted RBP15.67■□□□□ 0.1
RETREG3-209ENST00000590035 ADGRF5Q8IZF2 1346 aa15.67■□□□□ 0.1
RETREG3-209ENST00000590035 DDX17Q92841 729 aaKnown RBP15.66■□□□□ 0.1
RETREG3-209ENST00000590035 CCDC144AA2RUR9 1427 aa15.66■□□□□ 0.1
RETREG3-209ENST00000590035 KNDC1Q76NI1 1749 aa15.65■□□□□ 0.1
RETREG3-209ENST00000590035 PIK3C2GO75747 1445 aa15.65■□□□□ 0.1
RETREG3-209ENST00000590035 COL22A1Q8NFW1 1626 aaPredicted RBP15.65■□□□□ 0.1
RETREG3-209ENST00000590035 ANKRD30BQ9BXX2 1392 aa15.64■□□□□ 0.09
RETREG3-209ENST00000590035 MPHOSPH9Q99550 1183 aa15.64■□□□□ 0.09
RETREG3-209ENST00000590035 NRXN1Q9ULB1 1477 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms